Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Reverse (-)

31238939 .. 31241955

Gene Structure 3017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0311700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGGGAGTGCGTGATCGGGGTTCAGATTTTGATTTGGGAGCTGCTGCAGATGCGGCTGAATATGGGGCGGTTGTCGATGACCTGTGCGACAGTGCAGGTAGGATTCATTATTGTCTTCTGGAGGAGATTGTGAGGGAACGTGATCAGGTTGACGCCACTTTCCGGATTGCCTTCGCCTTGCTTGCACTGGGTCTAGTGTTGTGCCCCGGGACAGTGGACGCGATTGACACCTCCATGCTACTGCCACTGCTGGAAACCGGTCAGATTGTGAAGAAAAATTGGGCCTCGTTCTGTGTGAAAAGGTTGGAAGAAGAGGTTAAGAATCAGAGGGAATTTGGGGACGGTGTGGTTGGAGGGTGCGTATTGTTTCTGCAGGTTCTTTACTTCGACAAGGTCGGGGAGGCAACCTTTCACATCGATAGGTCAATTCTACCACTCAGGGCATGGGGAGAATTTGAGGTTAGGGAGTTGATTGGCATGATCAGAACATATGGTGGTTTCAAGAGCCCAATTGTTTTGATGGAAAGGAGTAAGCGTTCGAAGATGGCAAGTAAGTGCTGTGTGGATGACGGTGCGTTTGGACTAGGACTAAGGAGGGGTGTTCATGAGGACATTTTCGATGTAAAGTTGGAAATGATGGGGTTTAAGAATGACTTGTGCAGGCTCCGGGATGTTGTTGGAAAGCTCCAGCCGGACATGGTGGAGGTTACAAGGAAAGTAGAGATTATAGTACAGCTAATTGCTAGCCTGAAGGAGGACTGTGCTGAGAAGGTGAAGATGGAAATGAGGCGATACCTACCTCAAAGGGGGGATGCGACTGACGGTCATACAGTCCCGGTGTGGACTCCACCGAAGAATGGCGCAAAGGGAGCTGCAAAGTCAGTACTGGATGCAACATTTGAACTAGAGGAAAACATAACTAACACACCAAATCGAGGTGCTAACCAGGCCATTGAGGTAACCGGATATGCCATTGGGAAGGCGGTGAAAGCCGTGTCTGCCAGCTCAAGCAGCCCTGGTGCACCACCAGCAAAAACTGACAGGAAAACTAAGGGTGAAGTTGCACATTCATATAAGGCCGTCGCATCTCCACATGCACGTGCCCTTTTCACTTACGCAATAGCGCACAATCTCCAACCGGACTACCCGAAGGGTGTGAACTATAAGGGAGACGGATTCAATGTCAACAAAATGACTAATGTGCCAGGTCCTTACATTCTGCTGAATCCTTTAGAGGTTGATGACAATCTTCTGATCAATTACATCTTCTTGGGGGGGAAGCAATACACGATGGAGGAAGGAAGAATTATAGTTGCATCAAGTGGGAACAGTAGGTCTATACTTTACCGTGATGAAATATCATGCTTGGGCCCAAAGAAACTTCTGACAAGCTTCGTTATCAATTTCATTGCAGACAGCTTGAATAGTGATGGAAGTAGGGACTGGTTTCTCCCTACTTACTTCTCGGAAAAGGCAAATGCCTATAAACCTTCCGAGGCATTTCGCGATTGGGTGGAGCACACAAGGACACTGTGCAACCTTCACAGGTTTAATGGTTGTTTGGAAGATTGTAAGAGGATGTTTCTGCCTATGCACGATGCCTCTGATGGGGGGCATTGGTTTCTGCTGGTGGTTAATATGGAGAACAAGGTGGCTGAAGTTTGGGACAGTCTTCCTAATGAGTTCTCAAGTGCCAATAGATGGGACATTGCAGTGACAACGCTGCGCCATCTTAACCATTGCTTTTACTTTGACAAGATAAGGAACAAAGGGAGCACCACTGAGTTTGGGTTGTTCGACTATGTTGTTCAGGAAAATGTACCGAAGCAGATCAATGGTTATGATTGTGGCATATATGTCATACAGAATATGATGCACTATCGGACCAATTGGGCTAAAGGGGCCAGCTCGAATGATCTTCGATCAAGTGTGCTTCTGTATTGTCTCAAATCCCCTGCTAATGAGAGAGCCAAATTAACCCTTAGAGAAGCACGGGCATTTGCTGCGGAGGAGGGAAGTTTCATAGAGGACATCGTCCTCGCTGCTACTGGATGGGAAGGAGTTGAAATGTTTGAGTTTGATGACATAGGTGATGAGTTGGAAGCTAATGAGGTCGGGGGGGGGGGCGACTACAGCGACAAAGGGTTATTCGGGCACTGTAGGAGGGAACAAGGACCTGAGGGGAGGCTTTCCCAAGGGAATGTTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

736

Amino Acids

81.89

Weight (kDa)

5.56

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	491 - 627	9.6e-15	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	86, 364
AccB7I	CCANNNNNTGG	1 cut(s)	1701
AccII	CGCG	2 cut(s)	221, 1506
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	4 cut(s)	53, 68, 983, 2006
AcsI	RAATTY	2 cut(s)	332, 452
AcuI	CTGAAG	2 cut(s)	770, 1677
AcvI	CACGTG	1 cut(s)	1100
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	3 cut(s)	732, 885, 1821
AfiI	CCNNNNNNNGG	7 cut(s)	162, 754, 806, 857, 935, 1608, 1701
AgeI	ACCGGT	1 cut(s)	257
AgsI	TTSAA	5 cut(s)	502, 902, 1180, 1423, 2066
AhdI	GACNNNNNGTC	1 cut(s)	822
AjnI	CCWGG	3 cut(s)	945, 1015, 1204
AjuI	GAANNNNNNNTTGG	1 cut(s)	2187
AloI	GAACNNNNNNTCC	2 cut(s)	520, 552
AluBI	AGCT	9 cut(s)	41, 685, 736, 872, 1005, 1392, 1419, 1908, 2105
AluI	AGCT	9 cut(s)	41, 685, 736, 872, 1005, 1392, 1419, 1908, 2105
Alw21I	GWGCWC	3 cut(s)	1024, 1521, 1778
Alw26I	GTCTC	2 cut(s)	1164, 1949
Alw44I	GTGCAC	1 cut(s)	1020
Ama87I	CYCGRG	1 cut(s)	206
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	5 cut(s)	282, 948, 1077, 1369, 1902
ApaI	GGGCCC	1 cut(s)	1373
ApaLI	GTGCAC	1 cut(s)	1020
ApeKI	GCWGC	7 cut(s)	41, 44, 872, 1011, 1723, 2003, 2042
ApoI	RAATTY	2 cut(s)	332, 452
ArsI	GACNNNNNNTTYG	2 cut(s)	560, 592
AsiGI	ACCGGT	1 cut(s)	257
AspLEI	GCGC	3 cut(s)	863, 1126, 1728
AspS9I	GGNCC	7 cut(s)	282, 1208, 1369, 1370, 1884, 1902, 2174
AsuC2I	CCSGG	4 cut(s)	207, 208, 668, 836
AsuHPI	GGTGA	4 cut(s)	784, 997, 1067, 2102
AsuII	TTCGAA	1 cut(s)	539
AsuNHI	GCTAGC	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	3 cut(s)	1208, 1884, 2174
AxyI	CCTNAGG	1 cut(s)	2178
BaeGI	GKGCMC	5 cut(s)	206, 1024, 1105, 1373, 2157
BanII	GRGCYC	2 cut(s)	509, 1373
BbrPI	CACGTG	1 cut(s)	1100
BbsI	GAAGAC	2 cut(s)	107, 1664
Bbv12I	GWGCWC	3 cut(s)	1024, 1521, 1778
BbvI	GCAGC	7 cut(s)	28, 31, 859, 1023, 1710, 1990, 2029
BceAI	ACGGC	2 cut(s)	977, 1064
BciT130I	CCWGG	3 cut(s)	947, 1017, 1206
BclI	TGATCA	3 cut(s)	142, 480, 1254
BcnI	CCSGG	4 cut(s)	207, 208, 668, 836
BcoDI	GTCTC	2 cut(s)	1164, 1949
BfaI	CTAG	4 cut(s)	194, 584, 744, 905
BfmI	CTRYAG	4 cut(s)	45, 371, 2131, 2158
BfuAI	ACCTGC	2 cut(s)	86, 364
BisI	GCNGC	8 cut(s)	42, 45, 54, 873, 1012, 1724, 2004, 2043
BlsI	GCNGC	8 cut(s)	43, 46, 55, 874, 1013, 1725, 2005, 2044
BmcAI	AGTACT	1 cut(s)	885
Bme1390I	CCNGG	7 cut(s)	207, 208, 668, 836, 947, 1017, 1206
Bme18I	GGWCC	3 cut(s)	1208, 1884, 2174
BmeRI	GACNNNNNGTC	1 cut(s)	822
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	7 cut(s)	282, 1208, 1369, 1370, 1884, 1902, 2174
BmiI	GGNNCC	3 cut(s)	665, 1371, 1903
BmrFI	CCNGG	7 cut(s)	207, 208, 668, 836, 947, 1017, 1206
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	7 cut(s)	40, 802, 880, 1094, 1325, 1588, 1863
BmtI	GCTAGC	1 cut(s)	747
BmuI	ACTGGG	1 cut(s)	197
BpiI	GAAGAC	2 cut(s)	107, 1664
BpmI	CTGGAG	2 cut(s)	140, 671
Bpu14I	TTCGAA	1 cut(s)	539
BpuEI	CTTGAG	2 cut(s)	991, 1672
BpuMI	CCSGG	4 cut(s)	207, 208, 668, 836
Bsa29I	ATCGAT	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	1100
BsaBI	GATNNNNATC	1 cut(s)	1245
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	5 cut(s)	205, 206, 1015, 1494, 2194
BsaWI	WCCGGW	4 cut(s)	162, 257, 962, 1138
BsaXI	ACNNNNNCTCC	4 cut(s)	345, 375, 520, 550
Bsc4I	CCNNNNNNNGG	7 cut(s)	162, 754, 806, 857, 935, 1608, 1701
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	4 cut(s)	192, 891, 1448, 2053
Bse21I	CCTNAGG	1 cut(s)	2178
Bse3DI	GCAATG	3 cut(s)	1407, 1707, 1738
Bse8I	GATNNNNATC	1 cut(s)	1245
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	3 cut(s)	947, 1017, 1206
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	5 cut(s)	205, 206, 1015, 1494, 2194
BseGI	GGATG	6 cut(s)	571, 676, 817, 895, 1584, 2057
BseJI	GATNNNNATC	1 cut(s)	1245
BseLI	CCNNNNNNNGG	7 cut(s)	162, 754, 806, 857, 935, 1608, 1701
BseMI	GCAATG	3 cut(s)	1407, 1707, 1738
BseMII	CTCAG	4 cut(s)	451, 756, 1773, 2169
BseNI	ACTGG	4 cut(s)	192, 891, 1448, 2053
BseRI	GAGGAG	2 cut(s)	137, 2024
BseSI	GKGCMC	5 cut(s)	206, 1024, 1105, 1373, 2157
BseXI	GCAGC	7 cut(s)	28, 31, 859, 1023, 1710, 1990, 2029
BsgI	GTGCAG	2 cut(s)	114, 679
Bsh1236I	CGCG	2 cut(s)	221, 1506
BshFI	GGCC	5 cut(s)	284, 950, 1079, 1371, 1904
BshTI	ACCGGT	1 cut(s)	257
BshVI	ATCGAT	1 cut(s)	417
BsiHKAI	GWGCWC	3 cut(s)	1024, 1521, 1778
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	8 cut(s)	163, 207, 258, 667, 692, 836, 963, 1139
BslFI	GGGAC	6 cut(s)	223, 353, 818, 1454, 1679, 1718
BslI	CCNNNNNNNGG	7 cut(s)	162, 754, 806, 857, 935, 1608, 1701
BsmAI	GTCTC	2 cut(s)	1164, 1949
BsmBI	CGTCTC	1 cut(s)	1164
BsmFI	GGGAC	6 cut(s)	223, 353, 818, 1454, 1679, 1718
BsnI	GGCC	5 cut(s)	284, 950, 1079, 1371, 1904
BsoBI	CYCGRG	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	539
Bsp120I	GGGCCC	1 cut(s)	1369
Bsp1286I	GDGCHC	8 cut(s)	206, 509, 1024, 1105, 1373, 1521, 1778, 2157
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	7 cut(s)	13, 142, 480, 1254, 1830, 1915, 1922
Bsp68I	TCGCGA	1 cut(s)	1506
BspACI	CCGC	4 cut(s)	53, 68, 983, 2006
BspANI	GGCC	5 cut(s)	284, 950, 1079, 1371, 1904
BspCNI	CTCAG	4 cut(s)	450, 757, 1774, 2170
BspDI	ATCGAT	1 cut(s)	417
BspEI	TCCGGA	1 cut(s)	162
BspFNI	CGCG	2 cut(s)	221, 1506
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	3 cut(s)	665, 1371, 1903
BspMAI	CTGCAG	2 cut(s)	49, 375
BspMI	ACCTGC	2 cut(s)	86, 364
BspOI	GCTAGC	1 cut(s)	747
BspT104I	TTCGAA	1 cut(s)	539
BsrDI	GCAATG	3 cut(s)	1407, 1707, 1738
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	4 cut(s)	192, 891, 1448, 2053
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	5 cut(s)	205, 206, 1015, 1494, 2194
BssMI	GATC	7 cut(s)	13, 142, 480, 1254, 1830, 1915, 1922
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	2194
Bst2UI	CCWGG	3 cut(s)	947, 1017, 1206
Bst6I	CTCTTC	1 cut(s)	306
BstACI	GRCGYC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	2003
BstBAI	YACGTR	1 cut(s)	1100
BstBI	TTCGAA	1 cut(s)	539
BstC8I	GCNNGC	5 cut(s)	183, 662, 745, 1003, 1906
BstDEI	CTNAG	7 cut(s)	437, 590, 765, 1050, 1782, 1982, 2178
BstEII	GGTNACC	1 cut(s)	958
BstENI	CCTNNNNNAGG	1 cut(s)	752
BstF5I	GGATG	6 cut(s)	571, 676, 817, 895, 1584, 2057
BstFNI	CGCG	2 cut(s)	221, 1506
BstHHI	GCGC	3 cut(s)	863, 1126, 1728
BstKTI	GATC	7 cut(s)	16, 145, 483, 1257, 1833, 1918, 1925
BstMAI	GTCTC	2 cut(s)	1164, 1949
BstMBI	GATC	7 cut(s)	13, 142, 480, 1254, 1830, 1915, 1922
BstNI	CCWGG	3 cut(s)	947, 1017, 1206
BstNSI	RCATGY	1 cut(s)	1097
BstPI	GGTNACC	1 cut(s)	958
BstSCI	CCNGG	7 cut(s)	205, 206, 666, 834, 945, 1015, 1204
BstSFI	CTRYAG	4 cut(s)	45, 371, 2131, 2158
BstSLI	GKGCMC	5 cut(s)	206, 1024, 1105, 1373, 2157
BstUI	CGCG	2 cut(s)	221, 1506
BstV1I	GCAGC	7 cut(s)	28, 31, 859, 1023, 1710, 1990, 2029
BstV2I	GAAGAC	2 cut(s)	107, 1664
Bsu15I	ATCGAT	1 cut(s)	417
Bsu36I	CCTNAGG	1 cut(s)	2178
BsuRI	GGCC	5 cut(s)	284, 950, 1079, 1371, 1904
BsuTUI	ATCGAT	1 cut(s)	417
BtsCI	GGATG	6 cut(s)	571, 676, 817, 895, 1584, 2057
BtsI	GCAGTG	2 cut(s)	245, 1719
BtsIMutI	CAGTG	8 cut(s)	97, 185, 219, 245, 1529, 1719, 1779, 2155
BtuMI	TCGCGA	1 cut(s)	1506
BveI	ACCTGC	2 cut(s)	86, 364
Cac8I	GCNNGC	5 cut(s)	183, 662, 745, 1003, 1906
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	3 cut(s)	863, 1126, 1728
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	7 cut(s)	282, 1208, 1369, 1370, 1884, 1902, 2174
Cfr9I	CCCGGG	1 cut(s)	206
ClaI	ATCGAT	1 cut(s)	417
CseI	GACGC	2 cut(s)	161, 227
Csp6I	GTAC	3 cut(s)	731, 884, 1820
CspAI	ACCGGT	1 cut(s)	257
CspCI	CAANNNNNGTGG	2 cut(s)	1768, 1803
CviAII	CATG	7 cut(s)	235, 444, 478, 605, 697, 1094, 1362
CviQI	GTAC	3 cut(s)	731, 884, 1820
DdeI	CTNAG	7 cut(s)	437, 590, 765, 1050, 1782, 1982, 2178
DpnI	GATC	7 cut(s)	15, 144, 482, 1256, 1832, 1917, 1924
DpnII	GATC	7 cut(s)	13, 142, 480, 1254, 1830, 1915, 1922
DriI	GACNNNNNGTC	1 cut(s)	822
Eam1104I	CTCTTC	1 cut(s)	306
Eam1105I	GACNNNNNGTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	2194
Eco24I	GRGCYC	2 cut(s)	509, 1373
Eco47I	GGWCC	3 cut(s)	1208, 1884, 2174
Eco57I	CTGAAG	2 cut(s)	770, 1677
Eco72I	CACGTG	1 cut(s)	1100
Eco81I	CCTNAGG	1 cut(s)	2178
Eco88I	CYCGRG	1 cut(s)	206
Eco91I	GGTNACC	1 cut(s)	958
EcoNI	CCTNNNNNAGG	1 cut(s)	752
EcoO109I	RGGNCCY	2 cut(s)	1208, 2174
EcoO65I	GGTNACC	1 cut(s)	958
EcoRII	CCWGG	3 cut(s)	945, 1015, 1204
EcoT14I	CCWWGG	1 cut(s)	2194
EcoT38I	GRGCYC	2 cut(s)	509, 1373
ErhI	CCWWGG	1 cut(s)	2194
Esp3I	CGTCTC	1 cut(s)	1164
FaeI	CATG	7 cut(s)	238, 447, 481, 608, 700, 1097, 1365
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FaqI	GGGAC	6 cut(s)	223, 353, 818, 1454, 1679, 1718
FatI	CATG	7 cut(s)	234, 443, 477, 604, 696, 1093, 1361
FauNDI	CATATG	1 cut(s)	490
FbaI	TGATCA	3 cut(s)	142, 480, 1254
Fnu4HI	GCNGC	8 cut(s)	42, 45, 54, 873, 1012, 1724, 2004, 2043
FokI	GGATG	6 cut(s)	578, 683, 824, 902, 1591, 2064
FriOI	GRGCYC	2 cut(s)	509, 1373
Fsp4HI	GCNGC	8 cut(s)	42, 45, 54, 873, 1012, 1724, 2004, 2043
FspBI	CTAG	4 cut(s)	194, 584, 744, 905
GlaI	GCGC	3 cut(s)	862, 1125, 1727
GluI	GCNGC	8 cut(s)	42, 45, 54, 873, 1012, 1724, 2004, 2043
GsuI	CTGGAG	2 cut(s)	140, 671
HaeIII	GGCC	5 cut(s)	284, 950, 1079, 1371, 1904
HapII	CCGG	8 cut(s)	163, 207, 258, 667, 692, 836, 963, 1139
HgaI	GACGC	2 cut(s)	161, 227
HhaI	GCGC	3 cut(s)	863, 1126, 1728
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	7 cut(s)	238, 447, 481, 608, 700, 1097, 1365
Hin6I	GCGC	3 cut(s)	861, 1124, 1726
HinP1I	GCGC	3 cut(s)	861, 1124, 1726
HincII	GTYRAC	2 cut(s)	151, 1186
HindII	GTYRAC	2 cut(s)	151, 1186
HindIII	AAGCTT	1 cut(s)	1390
HinfI	GANTC	5 cut(s)	103, 322, 844, 1176, 1225
HpaII	CCGG	8 cut(s)	163, 207, 258, 667, 692, 836, 963, 1139
HphI	GGTGA	4 cut(s)	784, 997, 1067, 2102
Hpy166II	GTNNAC	6 cut(s)	151, 217, 843, 1022, 1159, 1186
Hpy188III	TCNNGA	6 cut(s)	119, 163, 502, 605, 1505, 1811
Hpy8I	GTNNAC	6 cut(s)	151, 217, 843, 1022, 1159, 1186
Hpy99I	CGWCG	1 cut(s)	1085
HpyAV	CCTTC	9 cut(s)	181, 745, 763, 973, 1144, 1292, 1500, 1550, 2051
HpyCH4IV	ACGT	2 cut(s)	139, 1099
HpyF3I	CTNAG	7 cut(s)	437, 590, 765, 1050, 1782, 1982, 2178
HpySE526I	ACGT	2 cut(s)	139, 1099
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	7 cut(s)	238, 447, 481, 608, 700, 1097, 1365
HspAI	GCGC	3 cut(s)	861, 1124, 1726
Kpn2I	TCCGGA	1 cut(s)	162
Ksp22I	TGATCA	3 cut(s)	142, 480, 1254
Kzo9I	GATC	7 cut(s)	13, 142, 480, 1254, 1830, 1915, 1922
LmnI	GCTCC	6 cut(s)	38, 669, 690, 869, 1516, 1773
Lsp1109I	GCAGC	7 cut(s)	28, 31, 859, 1023, 1710, 1990, 2029
LweI	GCATC	7 cut(s)	40, 802, 880, 1094, 1325, 1588, 1863
MaeI	CTAG	4 cut(s)	194, 584, 744, 905
MaeII	ACGT	2 cut(s)	139, 1099
MaeIII	GTNAC	3 cut(s)	706, 958, 1714
MalI	GATC	7 cut(s)	15, 144, 482, 1256, 1832, 1917, 1924
MboI	GATC	7 cut(s)	13, 142, 480, 1254, 1830, 1915, 1922
MfeI	CAATTG	2 cut(s)	510, 1888
MhlI	GDGCHC	8 cut(s)	206, 509, 1024, 1105, 1373, 1521, 1778, 2157
MlyI	GAGTC	1 cut(s)	838
MmeI	TCCRAC	6 cut(s)	285, 331, 609, 658, 1159, 2079
MroI	TCCGGA	1 cut(s)	162
MseI	TTAA	6 cut(s)	318, 645, 1551, 1635, 1734, 1976
MslI	CAYNNNNRTG	3 cut(s)	233, 1098, 1712
MspI	CCGG	8 cut(s)	163, 207, 258, 667, 692, 836, 963, 1139
MspR9I	CCNGG	7 cut(s)	207, 208, 668, 836, 947, 1017, 1206
MunI	CAATTG	2 cut(s)	510, 1888
MvaI	CCWGG	3 cut(s)	947, 1017, 1206
MvnI	CGCG	2 cut(s)	221, 1506
NciI	CCSGG	4 cut(s)	207, 208, 668, 836
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	7 cut(s)	13, 142, 480, 1254, 1830, 1915, 1922
NheI	GCTAGC	1 cut(s)	743
NlaIII	CATG	7 cut(s)	238, 447, 481, 608, 700, 1097, 1365
NlaIV	GGNNCC	3 cut(s)	665, 1371, 1903
NmuCI	GTSAC	1 cut(s)	1714
NruI	TCGCGA	1 cut(s)	1506
NspI	RCATGY	1 cut(s)	1097
NspV	TTCGAA	1 cut(s)	539
PagI	TCATGA	1 cut(s)	604
PfeI	GAWTC	4 cut(s)	103, 322, 1176, 1225
PflFI	GACNNNGTC	2 cut(s)	392, 2033
PflMI	CCANNNNNTGG	1 cut(s)	1701
PfoI	TCCNGGA	1 cut(s)	666
PinAI	ACCGGT	1 cut(s)	257
PkrI	GCNGC	8 cut(s)	43, 46, 55, 874, 1013, 1725, 2005, 2044
PleI	GAGTC	1 cut(s)	838
PmaCI	CACGTG	1 cut(s)	1100
PmlI	CACGTG	1 cut(s)	1100
PpsI	GAGTC	1 cut(s)	838
Ppu21I	YACGTR	1 cut(s)	1100
PpuMI	RGGWCCY	2 cut(s)	1208, 2174
Psp5II	RGGWCCY	2 cut(s)	1208, 2174
Psp6I	CCWGG	3 cut(s)	945, 1015, 1204
PspCI	CACGTG	1 cut(s)	1100
PspEI	GGTNACC	1 cut(s)	958
PspGI	CCWGG	3 cut(s)	945, 1015, 1204
PspN4I	GGNNCC	3 cut(s)	665, 1371, 1903
PspOMI	GGGCCC	1 cut(s)	1369
PspPI	GGNCC	7 cut(s)	282, 1208, 1369, 1370, 1884, 1902, 2174
PspPPI	RGGWCCY	2 cut(s)	1208, 2174
PstI	CTGCAG	2 cut(s)	49, 375
PsyI	GACNNNGTC	2 cut(s)	392, 2033
RruI	TCGCGA	1 cut(s)	1506
RsaI	GTAC	3 cut(s)	732, 885, 1821
RsaNI	GTAC	3 cut(s)	731, 884, 1820
RseI	CAYNNNNRTG	3 cut(s)	233, 1098, 1712
SaqAI	TTAA	6 cut(s)	318, 645, 1551, 1635, 1734, 1976
SatI	GCNGC	8 cut(s)	42, 45, 54, 873, 1012, 1724, 2004, 2043
Sau3AI	GATC	7 cut(s)	13, 142, 480, 1254, 1830, 1915, 1922
Sau96I	GGNCC	7 cut(s)	282, 1208, 1369, 1370, 1884, 1902, 2174
ScaI	AGTACT	1 cut(s)	885
SchI	GAGTC	1 cut(s)	838
ScrFI	CCNGG	7 cut(s)	207, 208, 668, 836, 947, 1017, 1206
SduI	GDGCHC	8 cut(s)	206, 509, 1024, 1105, 1373, 1521, 1778, 2157
SfaNI	GCATC	7 cut(s)	40, 802, 880, 1094, 1325, 1588, 1863
SfcI	CTRYAG	4 cut(s)	45, 371, 2131, 2158
SfuI	TTCGAA	1 cut(s)	539
SinI	GGWCC	3 cut(s)	1208, 1884, 2174
SmaI	CCCGGG	1 cut(s)	208
SmiMI	CAYNNNNRTG	3 cut(s)	233, 1098, 1712
SmlI	CTYRAG	2 cut(s)	1006, 1687
SmoI	CTYRAG	2 cut(s)	1006, 1687
SsiI	CCGC	4 cut(s)	53, 68, 983, 2006
SspMI	CTAG	4 cut(s)	194, 584, 744, 905
StyD4I	CCNGG	7 cut(s)	205, 206, 666, 834, 945, 1015, 1204
StyI	CCWWGG	1 cut(s)	2194
TaiI	ACGT	2 cut(s)	142, 1102
TaqI	TCGA	9 cut(s)	75, 387, 417, 539, 618, 934, 1797, 1910, 1921
TatI	WGTACW	2 cut(s)	730, 883
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	4 cut(s)	103, 322, 1176, 1225
Tru1I	TTAA	6 cut(s)	318, 645, 1551, 1635, 1734, 1976
Tru9I	TTAA	6 cut(s)	318, 645, 1551, 1635, 1734, 1976
TscAI	CASTG	8 cut(s)	97, 192, 219, 252, 1536, 1719, 1786, 2162
TseFI	GTSAC	1 cut(s)	1714
TseI	GCWGC	7 cut(s)	41, 44, 872, 1011, 1723, 2003, 2042
Tsp45I	GTSAC	1 cut(s)	1714
TspDTI	ATGAA	6 cut(s)	95, 593, 1059, 1368, 1396, 2011
TspGWI	ACGGA	2 cut(s)	1188, 2196
TspMI	CCCGGG	1 cut(s)	206
TspRI	CASTG	8 cut(s)	97, 192, 219, 252, 1536, 1719, 1786, 2162
Tth111I	GACNNNGTC	2 cut(s)	392, 2033
Van91I	CCANNNNNTGG	1 cut(s)	1701
VneI	GTGCAC	1 cut(s)	1020
VpaK11BI	GGWCC	3 cut(s)	1208, 1884, 2174
XagI	CCTNNNNNAGG	1 cut(s)	752
XapI	RAATTY	2 cut(s)	332, 452
XceI	RCATGY	1 cut(s)	1097
XcmI	CCANNNNNNNNNTGG	1 cut(s)	441
XmaI	CCCGGG	1 cut(s)	206
XspI	CTAG	4 cut(s)	194, 584, 744, 905
ZrmI	AGTACT	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.