Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Reverse (-)

37131147 .. 37131753

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0337900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAATAAGGCCATGCTTGCAAAAGCCAGCTGGAGAATTGTGCAGGATGATCAAGGTCTGAGTTGGAGAATTGGTGATGGGACTGAGGCAAAATTCTGGACAGACAAGTGGTCCCCATGTGGCATGCTTAAAAACCATGCTTTAAATCTTGATAGCATTAACTTAAACTCTATTGTCCAAACTTTTTGGATTGATAGGAATTGGAACTTGCCTATGTTACAGGCTAACCTTCCTGATGAGATTATTGACAAAATTATTGCTATCCCTATAGCTGGCTCCGAGTCTCCTGACCAAATTATCTGGGGTGGTACCTCATCAGGGATCTTCTCTGTTAAATCTGCTTACAGGATTCTTTGTGATGAACAGGGATGCCAAAGTTATGGTTGGTTGAGGAACTGGTCCCTTCCTATTCCTCATAAGCTCAAAATATTTCTCTGGTCTTTTGTCTCAAGCAAGCTGCTAACAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

156

Amino Acids

17.74

Weight (kDa)

7.71

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	92
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	2 cut(s)	272, 318
AhdI	GACNNNNNGTC	1 cut(s)	109
AluBI	AGCT	4 cut(s)	30, 272, 421, 457
AluI	AGCT	4 cut(s)	30, 272, 421, 457
Alw26I	GTCTC	2 cut(s)	288, 451
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	457
ApoI	RAATTY	1 cut(s)	92
Asp718I	GGTACC	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	111, 399
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	2 cut(s)	111, 399
BanI	GGYRCC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	444
BccI	CCATC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	288, 451
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	1 cut(s)	458
BlsI	GCNGC	1 cut(s)	459
Bme18I	GGWCC	2 cut(s)	111, 399
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	111, 399
BmiI	GGNNCC	4 cut(s)	113, 277, 310, 401
BmsI	GCATC	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 318
Bse1I	ACTGG	1 cut(s)	401
BseGI	GGATG	2 cut(s)	52, 374
BseLI	CCNNNNNNNGG	2 cut(s)	272, 318
BseMII	CTCAG	2 cut(s)	50, 75
BseNI	ACTGG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	444
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	11
BshNI	GGYRCC	1 cut(s)	308
BslFI	GGGAC	3 cut(s)	94, 97, 385
BslI	CCNNNNNNNGG	2 cut(s)	272, 318
BsmAI	GTCTC	2 cut(s)	288, 451
BsmFI	GGGAC	3 cut(s)	94, 97, 385
BsnI	GGCC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	49, 321
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	51, 76
BspLI	GGNNCC	4 cut(s)	113, 277, 310, 401
BspPI	GGATC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	401
BssMI	GATC	2 cut(s)	49, 321
BstC8I	GCNNGC	5 cut(s)	18, 28, 125, 274, 455
BstDEI	CTNAG	2 cut(s)	59, 84
BstF5I	GGATG	2 cut(s)	52, 374
BstKTI	GATC	2 cut(s)	52, 324
BstMAI	GTCTC	2 cut(s)	288, 451
BstMBI	GATC	2 cut(s)	49, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	321
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	52, 374
Cac8I	GCNNGC	5 cut(s)	18, 28, 125, 274, 455
Cfr13I	GGNCC	2 cut(s)	111, 399
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	4 cut(s)	13, 117, 124, 137
CviJI	RGCY	8 cut(s)	11, 26, 30, 224, 272, 276, 421, 457
CviKI_1	RGCY	8 cut(s)	11, 26, 30, 224, 272, 276, 421, 457
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	2 cut(s)	59, 84
DpnI	GATC	2 cut(s)	51, 323
DpnII	GATC	2 cut(s)	49, 321
DraI	TTTAAA	1 cut(s)	144
DriI	GACNNNNNGTC	1 cut(s)	109
Eam1105I	GACNNNNNGTC	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	111, 399
FaeI	CATG	4 cut(s)	16, 120, 127, 140
FaiI	YATR	8 cut(s)	14, 118, 125, 138, 215, 269, 381, 417
FaqI	GGGAC	3 cut(s)	94, 97, 385
FatI	CATG	4 cut(s)	12, 116, 123, 136
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	458
FokI	GGATG	2 cut(s)	59, 381
Fsp4HI	GCNGC	1 cut(s)	458
GluI	GCNGC	1 cut(s)	458
GsuI	CTGGAG	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	11
Hin1II	CATG	4 cut(s)	16, 120, 127, 140
HinfI	GANTC	2 cut(s)	281, 349
HphI	GGTGA	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	60, 280
Hpy188III	TCNNGA	4 cut(s)	97, 149, 233, 287
HpyAV	CCTTC	2 cut(s)	239, 413
HpyCH4V	TGCA	2 cut(s)	20, 43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	2 cut(s)	59, 84
Hsp92II	CATG	4 cut(s)	16, 120, 127, 140
KpnI	GGTACC	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	49, 321
LmnI	GCTCC	1 cut(s)	281
Lsp1109I	GCAGC	1 cut(s)	444
LweI	GCATC	1 cut(s)	359
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	2 cut(s)	51, 323
MboI	GATC	2 cut(s)	49, 321
MboII	GAAGA	1 cut(s)	316
MflI	RGATCY	1 cut(s)	321
MluCI	AATT	7 cut(s)	36, 69, 92, 199, 252, 294, 466
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	4 cut(s)	79, 322, 384, 423
MseI	TTAA	6 cut(s)	129, 143, 159, 164, 333, 469
MspA1I	CMGCKG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	2 cut(s)	49, 321
NlaIII	CATG	4 cut(s)	16, 120, 127, 140
NlaIV	GGNNCC	4 cut(s)	113, 277, 310, 401
NspI	RCATGY	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	459
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PspN4I	GGNNCC	4 cut(s)	113, 277, 310, 401
PspPI	GGNCC	2 cut(s)	111, 399
PsuI	RGATCY	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	30
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SaqAI	TTAA	6 cut(s)	129, 143, 159, 164, 333, 469
SatI	GCNGC	1 cut(s)	458
Sau3AI	GATC	2 cut(s)	49, 321
Sau96I	GGNCC	2 cut(s)	111, 399
SchI	GAGTC	1 cut(s)	290
SetI	ASST	7 cut(s)	32, 58, 231, 274, 314, 423, 459
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	2 cut(s)	111, 399
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
SphI	GCATGC	1 cut(s)	127
Sse9I	AATT	7 cut(s)	36, 69, 92, 199, 252, 294, 466
SspI	AATATT	1 cut(s)	429
TasI	AATT	7 cut(s)	36, 69, 92, 199, 252, 294, 466
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	6 cut(s)	129, 143, 159, 164, 333, 469
Tru9I	TTAA	6 cut(s)	129, 143, 159, 164, 333, 469
TseI	GCWGC	1 cut(s)	457
TspDTI	ATGAA	2 cut(s)	17, 375
VpaK11BI	GGWCC	2 cut(s)	111, 399
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.