Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

1751128 .. 1755633

Gene Structure 4506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0009700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTCAGGGAGGAAAGAAACAGTGTTGGACTTGGCCAAGTTTGTGGACAAAGGTGTCCAAGTCAAGCTCACTGGTGGTAGACAAGTGACAGGGACTCTAAAAGGATATGATCAGTTGTTAAACCTTGTTCTGGATGAAGCAGTTGAATTTCTAAGAGATTCTGATGATCCACTGAAGACTACTGACCAAACCAGGCGCCTTGGCCTAATTGTTTGTAGGGGAACTGCTGTGATGCTCGTGTCACCAACAGATGGTACAGATGAGATTGCTAACCCCTTTAGCCAGCCAGATGGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005975 GO:0005976 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010393 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0017144 GO:0019953 GO:0022411 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044277 GO:0044703 GO:0045229 GO:0045488 GO:0045490 GO:0048229 GO:0048232 GO:0048235 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

99

Amino Acids

10.71

Weight (kDa)

4.79

Isoelectric Point (pI)

23.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	10 - 82	8.4e-21	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	195
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	194
AcyI	GRCGYC	1 cut(s)	196
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	2 cut(s)	130, 251
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	3 cut(s)	33, 202, 294
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	195
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	182
BccI	CCATC	2 cut(s)	245, 284
BciT130I	CCWGG	1 cut(s)	193
BclI	TGATCA	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	2 cut(s)	197, 295
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 251
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	130, 251
BseNI	ACTGG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	35, 204, 296
BshNI	GGYRCC	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	130, 251
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	35, 204, 296
Bsp143I	GATC	2 cut(s)	109, 166
BspANI	GGCC	3 cut(s)	35, 204, 296
BspLI	GGNNCC	2 cut(s)	197, 295
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	2 cut(s)	109, 166
BssNI	GRCGYC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	199
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	2 cut(s)	112, 169
BstMBI	GATC	2 cut(s)	109, 166
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	182
BstXI	CCANNNNNNTGG	2 cut(s)	43, 290
BsuRI	GGCC	3 cut(s)	35, 204, 296
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	27, 69, 170
Cac8I	GCNNGC	1 cut(s)	284
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	255
CviJI	RGCY	6 cut(s)	35, 67, 204, 282, 286, 296
CviKI_1	RGCY	6 cut(s)	35, 67, 204, 282, 286, 296
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	1 cut(s)	152
DinI	GGCGCC	1 cut(s)	197
DpnI	GATC	2 cut(s)	111, 168
DpnII	GATC	2 cut(s)	109, 166
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	199
EgeI	GGCGCC	1 cut(s)	197
EheI	GGCGCC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	199
FaiI	YATR	1 cut(s)	108
FaqI	GGGAC	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	79
FokI	GGATG	1 cut(s)	146
GlaI	GCGC	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	3 cut(s)	35, 204, 296
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	94, 158
HphI	GGTGA	1 cut(s)	234
Hpy166II	GTNNAC	2 cut(s)	46, 80
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	2 cut(s)	46, 80
HpyCH4III	ACNGT	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	152
Hsp92I	GRCGYC	1 cut(s)	196
HspAI	GCGC	1 cut(s)	196
KasI	GGCGCC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	109, 166
LpnPI	CCDG	6 cut(s)	57, 75, 116, 178, 205, 296
LweI	GCATC	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	85, 240
MalI	GATC	2 cut(s)	111, 168
MboI	GATC	2 cut(s)	109, 166
MboII	GAAGA	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	2 cut(s)	146, 207
MluNI	TGGCCA	1 cut(s)	35
Mly113I	GGCGCC	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	1 cut(s)	3
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	119
Msp20I	TGGCCA	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
NarI	GGCGCC	1 cut(s)	196
NdeII	GATC	2 cut(s)	109, 166
NlaIV	GGNNCC	2 cut(s)	197, 295
NmuCI	GTSAC	2 cut(s)	85, 240
PfeI	GAWTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	251
PleI	GAGTC	1 cut(s)	88
PluTI	GGCGCC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	197, 295
PspPI	GGNCC	1 cut(s)	294
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	109, 166
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	193
SetI	ASST	3 cut(s)	55, 69, 126
SfaNI	GCATC	1 cut(s)	222
SfoI	GGCGCC	1 cut(s)	197
Sse9I	AATT	2 cut(s)	146, 207
SspDI	GGCGCC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	22
TasI	AATT	2 cut(s)	146, 207
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	3 cut(s)	27, 76, 177
TseFI	GTSAC	2 cut(s)	85, 240
Tsp45I	GTSAC	2 cut(s)	85, 240
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	3 cut(s)	27, 76, 177
Van91I	CCANNNNNTGG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.