Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Reverse (-)

66897772 .. 66898547

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0485400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCAACCACCGTCCCACCCATCCTCCCGATCTCCACCACCTGTGTCGCCGCCGCCGGATCCATCGAGTCCCAGGCCTCCCAGCCTCGGATCGCCACCCTGGCCTTCCGCGCCTTCATCAACCACATCACCGACACCGTCCGCAACGGCCTCTCCCAGCGCCGCCCCTGGGCCGAGCTTGCCAACCGCTCCGCCTTCGCCAAGCCCGAGTCCTTCTCCGACGCCACCCTCCGTGTCTGCAAGAACTACTCCTACTTCCGCGTCAACTACCTCGCCGTCGTCGCCCTCATCGTCGCCATCTCCCTCTTCACCCACCCCTTCTCCCTCGGCCTCTTCGCCGCCTGGTTCTTCCTCTACCTCTTCCGCCCCTCCGATCAGCCCCTCGTTATCTTCGGCCGGACTTTCTCCGACACCCAAACCCTAATGGGCCTCGTCGGCCTCAGCGTCTTCGTCGTCTTCCTCACCTCCGTCGGGCAAGGGATTGAAGAGATTTCATACTGTGTTTGTAGAGAGCGAGGTTGCGAATCACCTCGGATGAAAGAAGCCATCGACCATCAAAACTCTTTTCTCGTGCTTCAACCCGAGACCATGGAGAAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

200

Amino Acids

22.27

Weight (kDa)

8.32

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	50 - 158	1.8e-34	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	189
AccII	CGCG	2 cut(s)	111, 261
AclWI	GGATC	3 cut(s)	54, 67, 98
AcoI	YGGCCR	1 cut(s)	394
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	3 cut(s)	87, 169, 471
AgsI	TTSAA	2 cut(s)	485, 578
AjnI	CCWGG	4 cut(s)	72, 99, 167, 341
AluBI	AGCT	2 cut(s)	178, 598
AluI	AGCT	2 cut(s)	178, 598
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	3 cut(s)	54, 67, 98
Ama87I	CYCGRG	2 cut(s)	206, 581
AoxI	GGCC	8 cut(s)	75, 102, 148, 171, 328, 394, 427, 436
AspLEI	GCGC	2 cut(s)	113, 162
AspS9I	GGNCC	2 cut(s)	171, 427
AsuHPI	GGTGA	4 cut(s)	121, 301, 454, 519
AvaI	CYCGRG	2 cut(s)	206, 581
BamHI	GGATCC	1 cut(s)	59
BauI	CACGAG	1 cut(s)	569
BbsI	GAAGAC	2 cut(s)	439, 448
BbvCI	CCTCAGC	1 cut(s)	440
BccI	CCATC	5 cut(s)	29, 71, 305, 554, 561
BceAI	ACGGC	2 cut(s)	163, 260
BciT130I	CCWGG	4 cut(s)	74, 101, 169, 343
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	1 cut(s)	601
BfoI	RGCGCY	1 cut(s)	163
BglI	GCCNNNNNGGC	2 cut(s)	101, 435
BisI	GCNGC	4 cut(s)	51, 54, 163, 339
BlsI	GCNGC	4 cut(s)	52, 55, 164, 340
Bme1390I	CCNGG	4 cut(s)	74, 101, 169, 343
BmeT110I	CYCGRG	2 cut(s)	206, 581
BmgT120I	GGNCC	2 cut(s)	171, 427
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	4 cut(s)	74, 101, 169, 343
BpiI	GAAGAC	2 cut(s)	439, 448
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
Bpu10I	CCTNAGC	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	578
BsaJI	CCNNGG	8 cut(s)	72, 86, 99, 167, 168, 325, 530, 588
BsaXI	ACNNNNNCTCC	6 cut(s)	9, 39, 137, 167, 305, 335
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 169, 471
BseBI	CCWGG	4 cut(s)	74, 101, 169, 343
BseDI	CCNNGG	8 cut(s)	72, 86, 99, 167, 168, 325, 530, 588
BseGI	GGATG	2 cut(s)	21, 540
BseLI	CCNNNNNNNGG	3 cut(s)	87, 169, 471
BseMII	CTCAG	1 cut(s)	454
BseX3I	CGGCCG	1 cut(s)	394
BseYI	CCCAGC	2 cut(s)	81, 156
Bsh1236I	CGCG	2 cut(s)	111, 261
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
BsiEI	CGRYCG	1 cut(s)	397
BsiHKCI	CYCGRG	2 cut(s)	206, 581
BsiSI	CCGG	2 cut(s)	57, 397
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	87, 169, 471
BsmAI	GTCTC	1 cut(s)	578
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
Bso31I	GGTCTC	1 cut(s)	578
BsoBI	CYCGRG	2 cut(s)	206, 581
Bsp143I	GATC	4 cut(s)	30, 59, 90, 373
Bsp19I	CCATGG	1 cut(s)	588
BspANI	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
BspCNI	CTCAG	1 cut(s)	453
BspFNI	CGCG	2 cut(s)	111, 261
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	3 cut(s)	54, 67, 98
BspTNI	GGTCTC	1 cut(s)	578
BsrBI	CCGCTC	1 cut(s)	189
BssECI	CCNNGG	8 cut(s)	72, 86, 99, 167, 168, 325, 530, 588
BssMI	GATC	4 cut(s)	30, 59, 90, 373
BssNI	GRCGYC	1 cut(s)	222
BssSI	CACGAG	1 cut(s)	569
BssT1I	CCWWGG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	569
Bst2UI	CCWGG	4 cut(s)	74, 101, 169, 343
Bst4CI	ACNGT	3 cut(s)	13, 139, 500
Bst6I	CTCTTC	4 cut(s)	311, 338, 365, 480
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	440
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	2 cut(s)	21, 540
BstFNI	CGCG	2 cut(s)	111, 261
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	113, 162
BstKTI	GATC	4 cut(s)	33, 62, 93, 376
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	4 cut(s)	30, 59, 90, 373
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 435
BstNI	CCWGG	4 cut(s)	74, 101, 169, 343
BstSCI	CCNGG	4 cut(s)	72, 99, 167, 341
BstUI	CGCG	2 cut(s)	111, 261
BstV2I	GAAGAC	2 cut(s)	439, 448
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BstZI	CGGCCG	1 cut(s)	394
BsuRI	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
BtgI	CCRYGG	1 cut(s)	588
BtsCI	GGATG	2 cut(s)	21, 540
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	2 cut(s)	113, 162
Cfr13I	GGNCC	2 cut(s)	171, 427
CseI	GACGC	3 cut(s)	230, 250, 433
CviAII	CATG	1 cut(s)	589
DdeI	CTNAG	1 cut(s)	440
DpnI	GATC	4 cut(s)	32, 61, 92, 375
DpnII	GATC	4 cut(s)	30, 59, 90, 373
EaeI	YGGCCR	1 cut(s)	394
EagI	CGGCCG	1 cut(s)	394
Eam1104I	CTCTTC	4 cut(s)	311, 338, 365, 480
EarI	CTCTTC	4 cut(s)	311, 338, 365, 480
EciI	GGCGGA	2 cut(s)	181, 353
EclXI	CGGCCG	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	588
Eco147I	AGGCCT	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	578
Eco52I	CGGCCG	1 cut(s)	394
Eco88I	CYCGRG	2 cut(s)	206, 581
EcoRII	CCWGG	4 cut(s)	72, 99, 167, 341
EcoT14I	CCWWGG	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	1 cut(s)	592
FaiI	YATR	2 cut(s)	496, 590
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	1 cut(s)	588
Fnu4HI	GCNGC	4 cut(s)	51, 54, 163, 339
FokI	GGATG	2 cut(s)	8, 547
Fsp4HI	GCNGC	4 cut(s)	51, 54, 163, 339
FspBI	CTAG	1 cut(s)	601
GlaI	GCGC	2 cut(s)	112, 161
GluI	GCNGC	4 cut(s)	51, 54, 163, 339
GsaI	CCCAGC	2 cut(s)	85, 160
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	8 cut(s)	77, 104, 150, 173, 330, 396, 429, 438
HapII	CCGG	2 cut(s)	57, 397
HgaI	GACGC	3 cut(s)	230, 250, 433
HhaI	GCGC	2 cut(s)	113, 162
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	592
Hin6I	GCGC	2 cut(s)	111, 160
HinP1I	GCGC	2 cut(s)	111, 160
HincII	GTYRAC	2 cut(s)	6, 265
HindII	GTYRAC	2 cut(s)	6, 265
HinfI	GANTC	3 cut(s)	68, 209, 524
HpaII	CCGG	2 cut(s)	57, 397
HphI	GGTGA	4 cut(s)	121, 301, 454, 519
Hpy166II	GTNNAC	2 cut(s)	6, 265
Hpy188I	TCNGA	5 cut(s)	90, 220, 373, 409, 534
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	2 cut(s)	6, 265
Hpy99I	CGWCG	7 cut(s)	224, 281, 284, 296, 437, 455, 473
HpyAV	CCTTC	5 cut(s)	115, 124, 205, 223, 328
HpyCH4III	ACNGT	3 cut(s)	13, 139, 500
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 435
HpyF3I	CTNAG	1 cut(s)	440
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	592
HspAI	GCGC	2 cut(s)	111, 160
Kzo9I	GATC	4 cut(s)	30, 59, 90, 373
LmnI	GCTCC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	601
MalI	GATC	4 cut(s)	32, 61, 92, 375
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	4 cut(s)	30, 59, 90, 373
MboII	GAAGA	8 cut(s)	298, 325, 340, 352, 382, 439, 448, 497
MflI	RGATCY	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	77, 218
MmeI	TCCRAC	2 cut(s)	243, 432
MspI	CCGG	2 cut(s)	57, 397
MspR9I	CCNGG	4 cut(s)	74, 101, 169, 343
MvaI	CCWGG	4 cut(s)	74, 101, 169, 343
MvnI	CGCG	2 cut(s)	111, 261
MwoI	GCNNNNNNNGC	5 cut(s)	101, 110, 179, 281, 435
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	4 cut(s)	30, 59, 90, 373
NlaIII	CATG	1 cut(s)	592
NlaIV	GGNNCC	1 cut(s)	61
NmeAIII	GCCGAG	2 cut(s)	199, 306
PasI	CCCWGGG	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	3 cut(s)	204, 288, 441
PfeI	GAWTC	1 cut(s)	524
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	52, 55, 164, 340
PleI	GAGTC	2 cut(s)	76, 217
PpsI	GAGTC	2 cut(s)	76, 217
Psp6I	CCWGG	4 cut(s)	72, 99, 167, 341
PspFI	CCCAGC	2 cut(s)	81, 156
PspGI	CCWGG	4 cut(s)	72, 99, 167, 341
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	171, 427
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PsuI	RGATCY	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	137
SatI	GCNGC	4 cut(s)	51, 54, 163, 339
Sau3AI	GATC	4 cut(s)	30, 59, 90, 373
Sau96I	GGNCC	2 cut(s)	171, 427
SchI	GAGTC	2 cut(s)	77, 218
ScrFI	CCNGG	4 cut(s)	74, 101, 169, 343
SetI	ASST	8 cut(s)	44, 180, 273, 360, 467, 520, 532, 600
SfiI	GGCCNNNNNGGCC	1 cut(s)	435
SseBI	AGGCCT	1 cut(s)	77
SspMI	CTAG	1 cut(s)	601
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	4 cut(s)	72, 99, 167, 341
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	3 cut(s)	13, 139, 500
TaqI	TCGA	2 cut(s)	66, 549
TauI	GCSGC	4 cut(s)	53, 56, 165, 341
TfiI	GAWTC	1 cut(s)	524
TspDTI	ATGAA	3 cut(s)	106, 483, 551
TspGWI	ACGGA	2 cut(s)	221, 457
Tth111I	GACNNNGTC	1 cut(s)	137
XspI	CTAG	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.