Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

2074057 .. 2077301

Gene Structure 3245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0012700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGAACCAGCAAAAATAGATTGGAAAAACTTGGAATGGAGATTTGTAGAGGACAAAGCCTACGAGCAGATCAACGCCCCCAAGTGGTTCGATTTCTTGAACCCCAATGACAACCTCGTCGACGACCACGCCTGGTTTTGCACACCTGAATGCAATCACCCAAAGACGGCTGAAGATTTTCTTAGATCCTCACCTTTCAAGGTTCCGAGCCAATCTGATGCTTCTGGGGTCTCTCCGCTTGGTGATAAATTCCAAAGAGATGTGAAATTGAAAAGAAGAGGGCTCACCAGCTCTTCAGTTCATCCGACGAATAATAATTCAAGATTCAAGGAGGATAGCGAAAATCAGAACCCCAACCTATCAACCCCTCCAAATTATCAAGCTAAGGCCATGAAGGAAGCAATCAAATCAAGTACAGAGAAGAAGCAACCAACTGACACTGCTCCACAGAACAATGAGGTGCTCCCCAGGCTGAAAAGCACGCTGTCGGCGAGGAACTTATTTGCAGGAAAGGAGATTCTGAATCAGATCACTGACTTCTGCAGCGAATTGAAGAGAATGGCGATGGCGAGAGCAAAGGAGAGAGAGGAAGTGGAGAAAGGTGTGGTGAATAACAAGGAAGAGGAGGTGAAGCAGGTGGAGTCTAATGGTGAGTTGAATGGGAGGGAAAGAGAGAGAATGCCATTGCTTAAATTGGGAAAAGGGAAAACAGAAACAATGGTGAAGGAGGAGGAGTGTAATGGCGAAGCTGGGAGTGAGGTGAATGGGAAGCAAAGAGAAAGAATGCCATTGATGGATGCGAATAAAGGGAAAACTGAAGGATTTGAGGGGAGAATTTTAAAGGAGGGAAAGAGGATTAAGAAAAGAGTTGACAATGCAGAGAACATTCCAGTCTCTTTAAATTTGGAGAGTGTAAAGCGTAAAGGGGGAGAGGACTTGTTGCAAATCCGGACCAACCCTCCCTCTCCTCAATGCTTTTCTGCTACAAGGCCCCCCAGCAAAATCACACCTTCAAAAGCTTCGAAGTCCAAACTGATGGAAAAGGGGGGGATCCTTCAAGGGCAGACCAACAAACAAGTGATCGCCACGGGTGATTCTAAACAAGTAATCACCAAGGATGATTCTAAACAAGTGATAACCAAGGATGATTCTAAACAACTGATAACCAAGGATGATTCCACAGAAAAAGCCAAAAGCGTTTATATTGCTGATGGAAAAGAAGCAAGAACCTTGGACGTTTTCTGGTTTTTAAAACCTTGCACACTATCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

424

Amino Acids

47.73

Weight (kDa)

9.01

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	625
AasI	GACNNNNNNGTC	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	625
AccI	GTMKAC	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	948
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	3 cut(s)	180, 1045, 1058
AcsI	RAATTY	3 cut(s)	248, 834, 901
AcuI	CTGAAG	3 cut(s)	192, 279, 837
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	2 cut(s)	84, 166
AgsI	TTSAA	9 cut(s)	100, 199, 271, 321, 328, 553, 658, 1014, 1058
AjnI	CCWGG	2 cut(s)	131, 467
AluBI	AGCT	4 cut(s)	291, 383, 749, 1019
AluI	AGCT	4 cut(s)	291, 383, 749, 1019
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	2 cut(s)	235, 898
AlwI	GGATC	3 cut(s)	180, 1045, 1058
Aor13HI	TCCGGA	1 cut(s)	948
AoxI	GGCC	2 cut(s)	387, 989
ApeKI	GCWGC	1 cut(s)	543
ApoI	RAATTY	3 cut(s)	248, 834, 901
Asp700I	GAANNNNTTC	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	951, 990
AsuII	TTCGAA	1 cut(s)	1022
AvaII	GGWCC	1 cut(s)	951
BamHI	GGATCC	1 cut(s)	1050
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	555
BccI	CCATC	4 cut(s)	559, 787, 1030, 1205
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	2 cut(s)	133, 469
BcoDI	GTCTC	2 cut(s)	235, 898
BfmI	CTRYAG	1 cut(s)	541
BfuAI	ACCTGC	1 cut(s)	625
BisI	GCNGC	1 cut(s)	544
BlsI	GCNGC	1 cut(s)	545
Bme1390I	CCNGG	2 cut(s)	133, 469
Bme18I	GGWCC	1 cut(s)	951
BmgT120I	GGNCC	2 cut(s)	951, 990
BmiI	GGNNCC	4 cut(s)	6, 204, 992, 1052
BmrFI	CCNGG	2 cut(s)	133, 469
BmsI	GCATC	2 cut(s)	208, 787
Bpu10I	CCTNAGC	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	1022
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	6 cut(s)	467, 1086, 1113, 1140, 1167, 1230
BsaWI	WCCGGW	1 cut(s)	948
BsaXI	ACNNNNNCTCC	4 cut(s)	719, 749, 943, 973
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 166
Bse1I	ACTGG	1 cut(s)	890
Bse3DI	GCAATG	1 cut(s)	683
BseAI	TCCGGA	1 cut(s)	948
BseBI	CCWGG	2 cut(s)	133, 469
BseDI	CCNNGG	6 cut(s)	467, 1086, 1113, 1140, 1167, 1230
BseGI	GGATG	5 cut(s)	301, 802, 1123, 1150, 1177
BseLI	CCNNNNNNNGG	2 cut(s)	84, 166
BseMI	GCAATG	1 cut(s)	683
BseNI	ACTGG	1 cut(s)	890
BseRI	GAGGAG	4 cut(s)	638, 743, 746, 957
BseXI	GCAGC	1 cut(s)	555
BseYI	CCCAGC	2 cut(s)	749, 995
BshFI	GGCC	2 cut(s)	389, 991
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	949
BslI	CCNNNNNNNGG	2 cut(s)	84, 166
BsmAI	GTCTC	2 cut(s)	235, 898
BsmI	GAATGC	3 cut(s)	155, 684, 789
BsnI	GGCC	2 cut(s)	389, 991
Bso31I	GGTCTC	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	1022
Bsp1286I	GDGCHC	2 cut(s)	285, 465
Bsp13I	TCCGGA	1 cut(s)	948
Bsp143I	GATC	5 cut(s)	69, 185, 528, 1050, 1080
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	2 cut(s)	389, 991
BspEI	TCCGGA	1 cut(s)	948
BspLI	GGNNCC	4 cut(s)	6, 204, 992, 1052
BspMAI	CTGCAG	1 cut(s)	545
BspMI	ACCTGC	1 cut(s)	625
BspPI	GGATC	3 cut(s)	180, 1045, 1058
BspQI	GCTCTTC	1 cut(s)	298
BspT104I	TTCGAA	1 cut(s)	1022
BspTNI	GGTCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	890
BssECI	CCNNGG	6 cut(s)	467, 1086, 1113, 1140, 1167, 1230
BssMI	GATC	5 cut(s)	69, 185, 528, 1050, 1080
BssT1I	CCWWGG	4 cut(s)	1113, 1140, 1167, 1230
Bst2UI	CCWGG	2 cut(s)	133, 469
Bst6I	CTCTTC	4 cut(s)	271, 298, 548, 615
BstBI	TTCGAA	1 cut(s)	1022
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	2 cut(s)	182, 384
BstDSI	CCRYGG	1 cut(s)	1086
BstF5I	GGATG	5 cut(s)	301, 802, 1123, 1150, 1177
BstKTI	GATC	5 cut(s)	72, 188, 531, 1053, 1083
BstMAI	GTCTC	2 cut(s)	235, 898
BstMBI	GATC	5 cut(s)	69, 185, 528, 1050, 1080
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstNI	CCWGG	2 cut(s)	133, 469
BstSCI	CCNGG	2 cut(s)	131, 467
BstSFI	CTRYAG	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	555
BstX2I	RGATCY	2 cut(s)	185, 1050
BstXI	CCANNNNNNTGG	1 cut(s)	1036
BstYI	RGATCY	2 cut(s)	185, 1050
BsuRI	GGCC	2 cut(s)	389, 991
BtgI	CCRYGG	1 cut(s)	1086
BtgZI	GCGATG	1 cut(s)	578
BtsCI	GGATG	5 cut(s)	301, 802, 1123, 1150, 1177
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	2 cut(s)	438, 531
BveI	ACCTGC	1 cut(s)	625
Cac8I	GCNNGC	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	951, 990
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	2 cut(s)	182, 384
DpnI	GATC	5 cut(s)	71, 187, 530, 1052, 1082
DpnII	GATC	5 cut(s)	69, 185, 528, 1050, 1080
DraI	TTTAAA	3 cut(s)	840, 900, 1251
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	4 cut(s)	271, 298, 548, 615
EarI	CTCTTC	4 cut(s)	271, 298, 548, 615
Eco130I	CCWWGG	4 cut(s)	1113, 1140, 1167, 1230
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	951
Eco57I	CTGAAG	3 cut(s)	192, 279, 837
EcoO109I	RGGNCCY	1 cut(s)	990
EcoRII	CCWGG	2 cut(s)	131, 467
EcoT14I	CCWWGG	4 cut(s)	1113, 1140, 1167, 1230
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	4 cut(s)	1113, 1140, 1167, 1230
FaeI	CATG	1 cut(s)	394
FaiI	YATR	2 cut(s)	392, 1203
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FatI	CATG	1 cut(s)	390
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	544
FokI	GGATG	5 cut(s)	288, 809, 1130, 1157, 1184
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	544
GluI	GCNGC	1 cut(s)	544
GsaI	CCCAGC	2 cut(s)	753, 999
HaeIII	GGCC	2 cut(s)	389, 991
HapII	CCGG	1 cut(s)	949
Hin1II	CATG	1 cut(s)	394
HincII	GTYRAC	2 cut(s)	121, 871
HindII	GTYRAC	2 cut(s)	121, 871
HindIII	AAGCTT	1 cut(s)	1017
HinfI	GANTC	8 cut(s)	324, 517, 523, 641, 1094, 1121, 1148, 1175
HpaII	CCGG	1 cut(s)	949
Hpy166II	GTNNAC	2 cut(s)	121, 871
Hpy188I	TCNGA	6 cut(s)	207, 217, 306, 348, 522, 528
Hpy188III	TCNNGA	3 cut(s)	97, 321, 949
Hpy8I	GTNNAC	2 cut(s)	121, 871
Hpy99I	CGWCG	3 cut(s)	122, 125, 310
HpyAV	CCTTC	5 cut(s)	388, 718, 812, 1020, 1064
HpyCH4IV	ACGT	1 cut(s)	1236
HpyCH4V	TGCA	7 cut(s)	141, 153, 506, 543, 878, 943, 1260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	2 cut(s)	182, 384
HpySE526I	ACGT	1 cut(s)	1236
Hsp92II	CATG	1 cut(s)	394
Kpn2I	TCCGGA	1 cut(s)	948
Kzo9I	GATC	5 cut(s)	69, 185, 528, 1050, 1080
LguI	GCTCTTC	1 cut(s)	298
LmnI	GCTCC	2 cut(s)	448, 468
Lsp1109I	GCAGC	1 cut(s)	555
LweI	GCATC	2 cut(s)	208, 787
MaeII	ACGT	1 cut(s)	1236
MalI	GATC	5 cut(s)	71, 187, 530, 1052, 1082
MboI	GATC	5 cut(s)	69, 185, 528, 1050, 1080
MboII	GAAGA	6 cut(s)	185, 285, 288, 433, 565, 632
MflI	RGATCY	2 cut(s)	185, 1050
MhlI	GDGCHC	2 cut(s)	285, 465
MluCI	AATT	8 cut(s)	248, 266, 316, 373, 548, 692, 834, 901
MlyI	GAGTC	1 cut(s)	650
MmeI	TCCRAC	1 cut(s)	329
MroI	TCCGGA	1 cut(s)	948
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	5 cut(s)	690, 839, 858, 899, 1250
MslI	CAYNNNNRTG	1 cut(s)	148
MspI	CCGG	1 cut(s)	949
MspR9I	CCNGG	2 cut(s)	133, 469
Mva1269I	GAATGC	3 cut(s)	155, 684, 789
MvaI	CCWGG	2 cut(s)	133, 469
MwoI	GCNNNNNNNGC	1 cut(s)	469
NdeII	GATC	5 cut(s)	69, 185, 528, 1050, 1080
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	4 cut(s)	6, 204, 992, 1052
NspV	TTCGAA	1 cut(s)	1022
PaqCI	CACCTGC	1 cut(s)	625
PciSI	GCTCTTC	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PctI	GAATGC	3 cut(s)	155, 684, 789
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	7 cut(s)	324, 517, 523, 1094, 1121, 1148, 1175
PkrI	GCNGC	1 cut(s)	545
PleI	GAGTC	1 cut(s)	649
PpsI	GAGTC	1 cut(s)	649
Psp6I	CCWGG	2 cut(s)	131, 467
PspFI	CCCAGC	2 cut(s)	749, 995
PspGI	CCWGG	2 cut(s)	131, 467
PspN4I	GGNNCC	4 cut(s)	6, 204, 992, 1052
PspPI	GGNCC	2 cut(s)	951, 990
PstI	CTGCAG	1 cut(s)	545
PsuI	RGATCY	2 cut(s)	185, 1050
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	148
SalI	GTCGAC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	298
SaqAI	TTAA	5 cut(s)	690, 839, 858, 899, 1250
SatI	GCNGC	1 cut(s)	544
Sau3AI	GATC	5 cut(s)	69, 185, 528, 1050, 1080
Sau96I	GGNCC	2 cut(s)	951, 990
SchI	GAGTC	1 cut(s)	650
ScrFI	CCNGG	2 cut(s)	133, 469
SduI	GDGCHC	2 cut(s)	285, 465
SfaNI	GCATC	2 cut(s)	208, 787
SfcI	CTRYAG	1 cut(s)	541
SfuI	TTCGAA	1 cut(s)	1022
SgrDI	CGTCGACG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	951
SmiMI	CAYNNNNRTG	1 cut(s)	148
Sse9I	AATT	8 cut(s)	248, 266, 316, 373, 548, 692, 834, 901
SsiI	CCGC	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	131, 467
StyI	CCWWGG	4 cut(s)	1113, 1140, 1167, 1230
TaiI	ACGT	1 cut(s)	1239
TaqI	TCGA	3 cut(s)	90, 120, 1022
TasI	AATT	8 cut(s)	248, 266, 316, 373, 548, 692, 834, 901
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	7 cut(s)	324, 517, 523, 1094, 1121, 1148, 1175
Tru1I	TTAA	5 cut(s)	690, 839, 858, 899, 1250
Tru9I	TTAA	5 cut(s)	690, 839, 858, 899, 1250
TscAI	CASTG	2 cut(s)	445, 538
TseI	GCWGC	1 cut(s)	543
TspDTI	ATGAA	2 cut(s)	290, 407
TspRI	CASTG	2 cut(s)	445, 538
VpaK11BI	GGWCC	1 cut(s)	951
XapI	RAATTY	3 cut(s)	248, 834, 901
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.