Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Reverse (-)

17390208 .. 17391760

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0186800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGATCGCAGCACCGCCTTAACGTTCGCGTTCATCTGCATTATCGTCGCCGGCGTCGGAGGTCAAGCTCCGGCTTCCGCACCCACTAAATCTACGGCCACTCCGGCTTCGGCACCCACTAAATCTCCCGCCACTCCCGCCCCCACCACTTCACCATCCGCCGCTCCTTCAAAGCCCAAGTCCCCAGCTCCCGTCGCCACACCGGCCTCAACTCCGACCGCCGCTCCACCTACCCCCGTCGCCGCCGCTCCAACTCCGGTAGCCACTCCTCCCGCTAAATCTCCGCCGACTGCTGCACCTACACCGGTCGTAACTCCGGTCAGCGCACCCCCCGCCACTTCTCCCACACCGGCCGTCGTTCCCGTAGCACCGGTTTCTCCTCCCTCCATCGCACCTGCTGCTCCGGCTCCAAAATCCGTGACTCCTTCAGCTGCTCCCGGTCCAGCGACTGAGAGTCCACCCGCACCGCCAGCTGAGGCCCCCGGAATGAGCCCTGATGCCTCATCTCCGGGTCCTTCCGGCGCCGCAGCCGATGAGAGTGGAGCAGAGAAGGTGCATTACATCATGGTTGGATCGATTGCATTGGGATGGGGTGTGATCATGGCATTGTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

205

Amino Acids

19.32

Weight (kDa)

7.88

Isoelectric Point (pI)

84.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	403
Acc36I	ACCTGC	1 cut(s)	403
AccB1I	GGYRCC	2 cut(s)	112, 521
AccBSI	CCGCTC	3 cut(s)	164, 224, 248
AccII	CGCG	1 cut(s)	29
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	2 cut(s)	12, 580
AcoI	YGGCCR	2 cut(s)	96, 351
AcuI	CTGAAG	1 cut(s)	411
AcyI	GRCGYC	2 cut(s)	54, 522
AgeI	ACCGGT	2 cut(s)	304, 370
AgsI	TTSAA	1 cut(s)	171
AhdI	GACNNNNNGTC	1 cut(s)	453
AluBI	AGCT	4 cut(s)	68, 188, 431, 473
AluI	AGCT	4 cut(s)	68, 188, 431, 473
AlwI	GGATC	2 cut(s)	12, 580
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	4 cut(s)	96, 204, 351, 477
ApeKI	GCWGC	5 cut(s)	9, 293, 398, 431, 527
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AsiGI	ACCGGT	2 cut(s)	304, 370
AspLEI	GCGC	2 cut(s)	326, 524
AspS9I	GGNCC	3 cut(s)	440, 478, 512
AsuC2I	CCSGG	3 cut(s)	438, 483, 510
AsuHPI	GGTGA	1 cut(s)	144
AvaII	GGWCC	2 cut(s)	440, 512
BanI	GGYRCC	2 cut(s)	112, 521
BanII	GRGCYC	1 cut(s)	494
BarI	GAAGNNNNNNTAC	2 cut(s)	542, 574
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	5 cut(s)	21, 280, 385, 418, 539
BccI	CCATC	3 cut(s)	163, 395, 582
BceAI	ACGGC	2 cut(s)	111, 338
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BclI	TGATCA	1 cut(s)	597
BcnI	CCSGG	3 cut(s)	438, 483, 510
BfaI	CTAG	1 cut(s)	616
BfoI	RGCGCY	1 cut(s)	525
BfuAI	ACCTGC	1 cut(s)	403
BglI	GCCNNNNNGGC	2 cut(s)	104, 203
Bme1390I	CCNGG	3 cut(s)	438, 483, 510
Bme18I	GGWCC	2 cut(s)	440, 512
BmeRI	GACNNNNNGTC	1 cut(s)	453
BmgT120I	GGNCC	3 cut(s)	440, 478, 512
BmiI	GGNNCC	5 cut(s)	114, 408, 480, 513, 523
BmrFI	CCNGG	3 cut(s)	438, 483, 510
BmsI	GCATC	1 cut(s)	487
Bpu10I	CCTNAGC	1 cut(s)	474
BpuMI	CCSGG	3 cut(s)	438, 483, 510
Bsa29I	ATCGAT	1 cut(s)	575
BsaHI	GRCGYC	2 cut(s)	54, 522
BsaJI	CCNNGG	1 cut(s)	481
BsaWI	WCCGGW	4 cut(s)	256, 304, 316, 370
BsaXI	ACNNNNNCTCC	6 cut(s)	85, 109, 115, 139, 208, 238
Bse118I	RCCGGY	5 cut(s)	50, 202, 304, 349, 370
BseCI	ATCGAT	1 cut(s)	575
BseDI	CCNNGG	1 cut(s)	481
BseGI	GGATG	2 cut(s)	155, 593
BseMII	CTCAG	2 cut(s)	441, 465
BseRI	GAGGAG	2 cut(s)	258, 369
BseX3I	CGGCCG	1 cut(s)	351
BseXI	GCAGC	5 cut(s)	21, 280, 385, 418, 539
BseYI	CCCAGC	1 cut(s)	184
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	3 cut(s)	219, 309, 354
BshFI	GGCC	4 cut(s)	98, 206, 353, 479
BshNI	GGYRCC	2 cut(s)	112, 521
BshTI	ACCGGT	2 cut(s)	304, 370
BshVI	ATCGAT	1 cut(s)	575
BsiEI	CGRYCG	3 cut(s)	219, 309, 354
BslFI	GGGAC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	4 cut(s)	98, 206, 353, 479
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	3 cut(s)	4, 572, 597
BspANI	GGCC	4 cut(s)	98, 206, 353, 479
BspCNI	CTCAG	2 cut(s)	442, 466
BspDI	ATCGAT	1 cut(s)	575
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	5 cut(s)	114, 408, 480, 513, 523
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	2 cut(s)	12, 580
BspT107I	GGYRCC	2 cut(s)	112, 521
BsrBI	CCGCTC	3 cut(s)	164, 224, 248
BsrFI	RCCGGY	5 cut(s)	50, 202, 304, 349, 370
BssAI	RCCGGY	5 cut(s)	50, 202, 304, 349, 370
BssECI	CCNNGG	1 cut(s)	481
BssMI	GATC	3 cut(s)	4, 572, 597
BssNI	GRCGYC	2 cut(s)	54, 522
BstACI	GRCGYC	2 cut(s)	54, 522
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	52, 471
BstDEI	CTNAG	2 cut(s)	450, 474
BstF5I	GGATG	2 cut(s)	155, 593
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	525
BstHHI	GCGC	2 cut(s)	326, 524
BstKTI	GATC	3 cut(s)	7, 575, 600
BstMBI	GATC	3 cut(s)	4, 572, 597
BstMCI	CGRYCG	3 cut(s)	219, 309, 354
BstMWI	GCNNNNNNNGC	8 cut(s)	104, 137, 194, 203, 332, 398, 404, 470
BstSCI	CCNGG	3 cut(s)	436, 481, 508
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	5 cut(s)	21, 280, 385, 418, 539
BstZI	CGGCCG	1 cut(s)	351
Bsu15I	ATCGAT	1 cut(s)	575
BsuRI	GGCC	4 cut(s)	98, 206, 353, 479
BsuTUI	ATCGAT	1 cut(s)	575
BtgZI	GCGATG	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	155, 593
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	52, 471
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	2 cut(s)	326, 524
Cfr10I	RCCGGY	5 cut(s)	50, 202, 304, 349, 370
Cfr13I	GGNCC	3 cut(s)	440, 478, 512
ClaI	ATCGAT	1 cut(s)	575
CseI	GACGC	1 cut(s)	43
CspAI	ACCGGT	2 cut(s)	304, 370
CviAII	CATG	2 cut(s)	565, 601
DdeI	CTNAG	2 cut(s)	450, 474
DinI	GGCGCC	1 cut(s)	523
DpnI	GATC	3 cut(s)	6, 574, 599
DpnII	GATC	3 cut(s)	4, 572, 597
DriI	GACNNNNNGTC	1 cut(s)	453
EaeI	YGGCCR	2 cut(s)	96, 351
EagI	CGGCCG	1 cut(s)	351
Eam1105I	GACNNNNNGTC	1 cut(s)	453
EciI	GGCGGA	2 cut(s)	148, 273
EclXI	CGGCCG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	494
Eco47I	GGWCC	2 cut(s)	440, 512
Eco52I	CGGCCG	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	411
EcoO109I	RGGNCCY	2 cut(s)	478, 512
EcoT38I	GRGCYC	1 cut(s)	494
EgeI	GGCGCC	1 cut(s)	523
EheI	GGCGCC	1 cut(s)	523
FaeI	CATG	2 cut(s)	568, 604
FaiI	YATR	2 cut(s)	566, 602
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	2 cut(s)	564, 600
FauI	CCCGC	5 cut(s)	136, 145, 280, 340, 469
FbaI	TGATCA	1 cut(s)	597
FokI	GGATG	2 cut(s)	142, 600
FriOI	GRGCYC	1 cut(s)	494
FspBI	CTAG	1 cut(s)	616
GlaI	GCGC	2 cut(s)	325, 523
GsaI	CCCAGC	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	525
HaeIII	GGCC	4 cut(s)	98, 206, 353, 479
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	2 cut(s)	326, 524
Hin1I	GRCGYC	2 cut(s)	54, 522
Hin1II	CATG	2 cut(s)	568, 604
Hin6I	GCGC	2 cut(s)	324, 522
HinP1I	GCGC	2 cut(s)	324, 522
HinfI	GANTC	2 cut(s)	421, 454
HphI	GGTGA	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188I	TCNGA	2 cut(s)	59, 216
Hpy8I	GTNNAC	1 cut(s)	458
Hpy99I	CGWCG	5 cut(s)	50, 59, 197, 242, 359
HpyAV	CCTTC	4 cut(s)	177, 435, 525, 544
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	39, 296, 556, 581
HpyF10VI	GCNNNNNNNGC	8 cut(s)	104, 137, 194, 203, 332, 398, 404, 470
HpyF3I	CTNAG	2 cut(s)	450, 474
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	2 cut(s)	54, 522
Hsp92II	CATG	2 cut(s)	568, 604
HspAI	GCGC	2 cut(s)	324, 522
KasI	GGCGCC	1 cut(s)	521
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	597
Kzo9I	GATC	3 cut(s)	4, 572, 597
LmnI	GCTCC	9 cut(s)	73, 169, 193, 229, 253, 406, 412, 439, 542
Lsp1109I	GCAGC	5 cut(s)	21, 280, 385, 418, 539
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	1 cut(s)	616
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	310, 418
MalI	GATC	3 cut(s)	6, 574, 599
MbiI	CCGCTC	3 cut(s)	164, 224, 248
MboI	GATC	3 cut(s)	4, 572, 597
MhlI	GDGCHC	1 cut(s)	494
Mly113I	GGCGCC	1 cut(s)	522
MlyI	GAGTC	2 cut(s)	415, 463
MmeI	TCCRAC	4 cut(s)	37, 239, 275, 550
MnlI	CCTC	7 cut(s)	53, 217, 279, 390, 394, 469, 511
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	586
MspA1I	CMGCKG	2 cut(s)	431, 473
MspR9I	CCNGG	3 cut(s)	438, 483, 510
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	8 cut(s)	104, 137, 194, 203, 332, 398, 404, 470
NaeI	GCCGGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	522
NciI	CCSGG	3 cut(s)	438, 483, 510
NdeII	GATC	3 cut(s)	4, 572, 597
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	568, 604
NlaIV	GGNNCC	5 cut(s)	114, 408, 480, 513, 523
NmuCI	GTSAC	1 cut(s)	418
PaqCI	CACCTGC	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	52
PinAI	ACCGGT	2 cut(s)	304, 370
PleI	GAGTC	2 cut(s)	415, 462
PluTI	GGCGCC	1 cut(s)	525
PpsI	GAGTC	2 cut(s)	415, 462
PpuMI	RGGWCCY	1 cut(s)	512
Psp1406I	AACGTT	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	512
PspFI	CCCAGC	1 cut(s)	184
PspN4I	GGNNCC	5 cut(s)	114, 408, 480, 513, 523
PspPI	GGNCC	3 cut(s)	440, 478, 512
PspPPI	RGGWCCY	1 cut(s)	512
PstNI	CAGNNNCTG	1 cut(s)	449
PvuII	CAGCTG	2 cut(s)	431, 473
RseI	CAYNNNNRTG	1 cut(s)	586
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	4, 572, 597
Sau96I	GGNCC	3 cut(s)	440, 478, 512
SchI	GAGTC	2 cut(s)	415, 463
ScrFI	CCNGG	3 cut(s)	438, 483, 510
SduI	GDGCHC	1 cut(s)	494
SfaNI	GCATC	1 cut(s)	487
SfoI	GGCGCC	1 cut(s)	523
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	2 cut(s)	440, 512
SmiMI	CAYNNNNRTG	1 cut(s)	586
SspDI	GGCGCC	1 cut(s)	521
SspMI	CTAG	1 cut(s)	616
StyD4I	CCNGG	3 cut(s)	436, 481, 508
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	575
TauI	GCSGC	5 cut(s)	164, 224, 245, 248, 527
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	5 cut(s)	9, 293, 398, 431, 527
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	1 cut(s)	22
TspGWI	ACGGA	1 cut(s)	406
VpaK11BI	GGWCC	2 cut(s)	440, 512
XspI	CTAG	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.