Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

14147117 .. 14149401

Gene Structure 2285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0087400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGACTGCTCAGACTCAGGAAGAACTCCTCGCCGCCCATCTCGAACAGCAAACCATCGATCCTGATCAGCCTACGGTTGAAGAGGAAGATGACGATGATGAAGATGAAGACGATGATGATGACAAGGATGACGATGAAGTCGAGGGACAAGATGGGGAAGCGAGTGGCAGGTCAAAGCAAAGTAGAAGTGAAAAGAAAAGCCGAAAAGCAATGCTGAAGCTCGGAATGAAATCTATTCCAGGAGTTAGCCGGGTCACAGTCAAAAAAAGCAAGAATATCTTATTTGTGATATCCAAACCGGATGTTTTCAAGAGCCCAACTTCAGACACCTATGTTATCTTTGGTGAGGCAAAGATTGAGGATTTGAGCTCGCAACTGCAGACTCAGGCTGCAGAGCAGTTTAAAGCTCCTGATCTCAGTCATGTGATTTCCAAACCAGAGACCTCGGCCATAGCCCAAGACGATGAAGATGTAGATGAGACTGGAGTAGAGCCCAAGGATATTGAGTTGGTGATGACACAAGCAGGAGTATCTAGATCAAAGGCTGTAAAGGCACTGAAGGCTGCTGATGGAGACATTGTTTCTGCTATCATGGAACTTACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

202

Amino Acids

22.08

Weight (kDa)

4.3

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	64 - 119	1.1e-22	NAC domain
UBA_HYPK	PF19026	162 - 201	7.4e-13	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	159
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	447
AcuI	CTGAAG	3 cut(s)	236, 306, 578
AgsI	TTSAA	2 cut(s)	80, 310
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	3 cut(s)	220, 369, 407
AluI	AGCT	3 cut(s)	220, 369, 407
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	3 cut(s)	434, 473, 567
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	447
ApeKI	GCWGC	2 cut(s)	389, 563
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	356, 523
BanII	GRGCYC	3 cut(s)	317, 371, 495
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	376, 550
BccI	CCATC	4 cut(s)	45, 62, 146, 563
BciT130I	CCWGG	1 cut(s)	240
BclI	TGATCA	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	3 cut(s)	434, 473, 567
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	2 cut(s)	377, 390
BfuAI	ACCTGC	1 cut(s)	159
BisI	GCNGC	3 cut(s)	33, 390, 564
BlsI	GCNGC	3 cut(s)	34, 391, 565
Bme1390I	CCNGG	2 cut(s)	240, 251
BmrFI	CCNGG	2 cut(s)	240, 251
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	444, 495
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	444, 495
BseGI	GGATG	2 cut(s)	133, 307
BseJI	GATNNNNATC	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	4 cut(s)	23, 29, 398, 430
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	376, 550
BshFI	GGCC	1 cut(s)	449
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	250, 299
BslFI	GGGAC	1 cut(s)	159
BsmAI	GTCTC	3 cut(s)	434, 473, 567
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	449
Bso31I	GGTCTC	1 cut(s)	434
Bsp1286I	GDGCHC	3 cut(s)	317, 371, 495
Bsp143I	GATC	4 cut(s)	58, 64, 412, 536
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	4 cut(s)	22, 28, 397, 429
BspDI	ATCGAT	1 cut(s)	57
BspMAI	CTGCAG	2 cut(s)	381, 394
BspMI	ACCTGC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	444, 495
BssMI	GATC	4 cut(s)	58, 64, 412, 536
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	76, 259
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	4 cut(s)	9, 15, 384, 416
BstF5I	GGATG	2 cut(s)	133, 307
BstKTI	GATC	4 cut(s)	61, 67, 415, 539
BstMAI	GTCTC	3 cut(s)	434, 473, 567
BstMBI	GATC	4 cut(s)	58, 64, 412, 536
BstMWI	GCNNNNNNNGC	2 cut(s)	551, 560
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	238, 249
BstSFI	CTRYAG	2 cut(s)	377, 390
BstV1I	GCAGC	2 cut(s)	376, 550
BstV2I	GAAGAC	1 cut(s)	114
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	449
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	133, 307
BtsIMutI	CAGTG	1 cut(s)	554
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	371
ClaI	ATCGAT	1 cut(s)	57
CviAII	CATG	2 cut(s)	422, 592
DdeI	CTNAG	4 cut(s)	9, 15, 384, 416
DpnI	GATC	4 cut(s)	60, 66, 414, 538
DpnII	GATC	4 cut(s)	58, 64, 412, 536
DraI	TTTAAA	1 cut(s)	403
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	3 cut(s)	317, 371, 495
Eco31I	GGTCTC	1 cut(s)	434
Eco32I	GATATC	1 cut(s)	291
Eco53kI	GAGCTC	1 cut(s)	369
Eco57I	CTGAAG	3 cut(s)	236, 306, 578
EcoICRI	GAGCTC	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	3 cut(s)	317, 371, 495
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	2 cut(s)	425, 595
FaiI	YATR	4 cut(s)	333, 423, 452, 593
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	2 cut(s)	421, 591
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	3 cut(s)	33, 390, 564
FokI	GGATG	2 cut(s)	140, 314
FriOI	GRGCYC	3 cut(s)	317, 371, 495
Fsp4HI	GCNGC	3 cut(s)	33, 390, 564
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	3 cut(s)	33, 390, 564
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	449
HapII	CCGG	2 cut(s)	250, 299
Hin1II	CATG	2 cut(s)	425, 595
HinfI	GANTC	2 cut(s)	13, 382
HpaII	CCGG	2 cut(s)	250, 299
HphI	GGTGA	2 cut(s)	356, 523
Hpy188I	TCNGA	3 cut(s)	12, 224, 325
Hpy188III	TCNNGA	6 cut(s)	17, 41, 62, 310, 410, 534
HpyAV	CCTTC	1 cut(s)	553
HpyCH4III	ACNGT	2 cut(s)	76, 259
HpyCH4V	TGCA	2 cut(s)	379, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	551, 560
HpyF3I	CTNAG	4 cut(s)	9, 15, 384, 416
Hsp92II	CATG	2 cut(s)	425, 595
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	58, 64, 412, 536
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	2 cut(s)	376, 550
MaeI	CTAG	1 cut(s)	534
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	4 cut(s)	60, 66, 414, 538
MboI	GATC	4 cut(s)	58, 64, 412, 536
MboII	GAAGA	6 cut(s)	32, 92, 98, 113, 119, 479
MhlI	GDGCHC	3 cut(s)	317, 371, 495
MlyI	GAGTC	2 cut(s)	7, 376
MnlI	CCTC	6 cut(s)	38, 76, 136, 340, 352, 454
MseI	TTAA	1 cut(s)	402
MspI	CCGG	2 cut(s)	250, 299
MspR9I	CCNGG	2 cut(s)	240, 251
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	551, 560
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	4 cut(s)	58, 64, 412, 536
NlaIII	CATG	2 cut(s)	425, 595
NmeAIII	GCCGAG	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	3 cut(s)	34, 391, 565
PleI	GAGTC	2 cut(s)	7, 376
PpsI	GAGTC	2 cut(s)	7, 376
Psp124BI	GAGCTC	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PstI	CTGCAG	2 cut(s)	381, 394
SacI	GAGCTC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	3 cut(s)	33, 390, 564
Sau3AI	GATC	4 cut(s)	58, 64, 412, 536
SchI	GAGTC	2 cut(s)	7, 376
ScrFI	CCNGG	2 cut(s)	240, 251
SduI	GDGCHC	3 cut(s)	317, 371, 495
SetI	ASST	6 cut(s)	173, 222, 332, 371, 409, 446
SfcI	CTRYAG	2 cut(s)	377, 390
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	534
SstI	GAGCTC	1 cut(s)	371
StyD4I	CCNGG	2 cut(s)	238, 249
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	76, 259
TaqI	TCGA	3 cut(s)	42, 57, 141
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	561
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	2 cut(s)	389, 563
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	5 cut(s)	114, 120, 150, 242, 480
TspRI	CASTG	1 cut(s)	561
XbaI	TCTAGA	1 cut(s)	533
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.