Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

72961760 .. 72962734

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0541100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCGCAGCCGCAAACCGCCACTGCGACCTACACGAGCATCCCCGTCACCATTCCCGCCGCTGACGTCATCTCCCGATCCATCCAGAACCTTCTTGGCGCCATCTCCCGCCACCGCCCCTGGCCCGAGTTCGGATCATCTCTAAGTCGACCCGACTCCTACTCCTCCGCCCTGACCCGACTCCGCTTCAACTCCCGCCACTTCCGGACCAACTACATTCTCCTCATCGGGGTCTGCGGCTTCCTCTCCCTCATTGGAAGCCCCGGCTGGGTTCTCGCGACAGCCGCCGTCGTCGGGCTGTGGCTGGTGATCTACTTCTTCAGGGAGGACCCACTCGTGGTGTTGGGCCACCACTTTAGTGATTGGGCCGTTTTTGTGGGCCTGGTGCTGGTTTCTCTTGCGGTTGTGTGGTTGAGCAGTGGGCTTGGGAATGTGGTTTTGGGCCTTGGAATTGGGCTGCTCGTTTGTGGGCTTCATGGGCTGGTTCGGGATACCGAAGGCTTGTTTCTCAACGAGAACGAAGCCGCCTCGGCCGGGTTGATCGGGCCCACACCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

186

Amino Acids

19.91

Weight (kDa)

6.96

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	35 - 173	2.4e-36	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	148
AccII	CGCG	1 cut(s)	278
AccIII	TCCGGA	1 cut(s)	204
AclWI	GGATC	2 cut(s)	72, 142
AcoI	YGGCCR	1 cut(s)	531
AcuI	CTGAAG	1 cut(s)	304
AcyI	GRCGYC	2 cut(s)	66, 99
AfiI	CCNNNNNNNGG	7 cut(s)	131, 229, 268, 294, 337, 388, 534
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	119, 381
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AleI	CACNNNNGTG	1 cut(s)	357
AlwI	GGATC	2 cut(s)	72, 142
Ama87I	CYCGRG	1 cut(s)	125
Aor13HI	TCCGGA	1 cut(s)	204
AoxI	GGCC	7 cut(s)	122, 346, 366, 379, 442, 531, 545
ApaI	GGGCCC	1 cut(s)	549
ApeKI	GCWGC	2 cut(s)	7, 457
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	9 cut(s)	123, 207, 328, 346, 366, 379, 442, 545, 546
AsuC2I	CCSGG	2 cut(s)	264, 535
AsuHPI	GGTGA	2 cut(s)	40, 319
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	207, 328
BaeGI	GKGCMC	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	549
BauI	CACGAG	2 cut(s)	34, 335
BbvI	GCAGC	2 cut(s)	19, 444
BccI	CCATC	2 cut(s)	89, 110
BceAI	ACGGC	2 cut(s)	272, 353
BciT130I	CCWGG	2 cut(s)	121, 383
BciVI	GTATCC	1 cut(s)	484
BcnI	CCSGG	2 cut(s)	264, 535
BfoI	RGCGCY	1 cut(s)	102
BfuI	GTATCC	1 cut(s)	484
BglI	GCCNNNNNGGC	1 cut(s)	530
BisI	GCNGC	7 cut(s)	8, 11, 60, 238, 285, 458, 525
BlsI	GCNGC	7 cut(s)	9, 12, 61, 239, 286, 459, 526
Bme1390I	CCNGG	4 cut(s)	121, 264, 383, 535
Bme18I	GGWCC	2 cut(s)	207, 328
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	9 cut(s)	123, 207, 328, 346, 366, 379, 442, 545, 546
BmiI	GGNNCC	3 cut(s)	100, 330, 547
BmrFI	CCNGG	4 cut(s)	121, 264, 383, 535
BmsI	GCATC	1 cut(s)	48
BpuMI	CCSGG	2 cut(s)	264, 535
BsaHI	GRCGYC	2 cut(s)	66, 99
BsaJI	CCNNGG	4 cut(s)	119, 262, 445, 528
BsaWI	WCCGGW	1 cut(s)	204
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 146, 176
Bsc4I	CCNNNNNNNGG	7 cut(s)	131, 229, 268, 294, 337, 388, 534
BseAI	TCCGGA	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	121, 383
BseDI	CCNNGG	4 cut(s)	119, 262, 445, 528
BseGI	GGATG	2 cut(s)	39, 81
BseLI	CCNNNNNNNGG	7 cut(s)	131, 229, 268, 294, 337, 388, 534
BseRI	GAGGAG	2 cut(s)	154, 212
BseSI	GKGCMC	1 cut(s)	549
BseX3I	CGGCCG	1 cut(s)	531
BseXI	GCAGC	2 cut(s)	19, 444
BseYI	CCCAGC	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	534
BshFI	GGCC	7 cut(s)	124, 348, 368, 381, 444, 533, 547
BshNI	GGYRCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	3 cut(s)	205, 264, 534
BslI	CCNNNNNNNGG	7 cut(s)	131, 229, 268, 294, 337, 388, 534
BsnI	GGCC	7 cut(s)	124, 348, 368, 381, 444, 533, 547
BsoBI	CYCGRG	1 cut(s)	125
Bsp120I	GGGCCC	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp13I	TCCGGA	1 cut(s)	204
Bsp143I	GATC	4 cut(s)	77, 134, 309, 540
Bsp68I	TCGCGA	1 cut(s)	278
BspANI	GGCC	7 cut(s)	124, 348, 368, 381, 444, 533, 547
BspEI	TCCGGA	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	3 cut(s)	100, 330, 547
BspPI	GGATC	2 cut(s)	72, 142
BspT107I	GGYRCC	1 cut(s)	98
BssECI	CCNNGG	4 cut(s)	119, 262, 445, 528
BssMI	GATC	4 cut(s)	77, 134, 309, 540
BssNI	GRCGYC	2 cut(s)	66, 99
BssSI	CACGAG	2 cut(s)	34, 335
BssT1I	CCWWGG	1 cut(s)	445
Bst2BI	CACGAG	2 cut(s)	34, 335
Bst2UI	CCWGG	2 cut(s)	121, 383
BstACI	GRCGYC	2 cut(s)	66, 99
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	39, 81
BstFNI	CGCG	1 cut(s)	278
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	4 cut(s)	80, 137, 312, 543
BstMBI	GATC	4 cut(s)	77, 134, 309, 540
BstMCI	CGRYCG	1 cut(s)	534
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 478, 530
BstNI	CCWGG	2 cut(s)	121, 383
BstSCI	CCNGG	4 cut(s)	119, 262, 381, 533
BstSLI	GKGCMC	1 cut(s)	549
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	19, 444
BstZI	CGGCCG	1 cut(s)	531
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	7 cut(s)	124, 348, 368, 381, 444, 533, 547
BtsCI	GGATG	2 cut(s)	39, 81
BtsI	GCAGTG	2 cut(s)	21, 424
BtsIMutI	CAGTG	2 cut(s)	21, 424
BtuMI	TCGCGA	1 cut(s)	278
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	9 cut(s)	123, 207, 328, 346, 366, 379, 442, 545, 546
CviAII	CATG	1 cut(s)	476
DdeI	CTNAG	1 cut(s)	143
DinI	GGCGCC	1 cut(s)	100
DpnI	GATC	4 cut(s)	79, 136, 311, 542
DpnII	GATC	4 cut(s)	77, 134, 309, 540
EaeI	YGGCCR	1 cut(s)	531
EagI	CGGCCG	1 cut(s)	531
EciI	GGCGGA	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	207, 328
Eco52I	CGGCCG	1 cut(s)	531
Eco57I	CTGAAG	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	119, 381
EcoT14I	CCWWGG	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	549
EgeI	GGCGCC	1 cut(s)	100
EheI	GGCGCC	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	1 cut(s)	479
FaiI	YATR	1 cut(s)	477
FatI	CATG	1 cut(s)	475
FauI	CCCGC	3 cut(s)	64, 116, 203
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	7 cut(s)	8, 11, 60, 238, 285, 458, 525
FokI	GGATG	2 cut(s)	26, 68
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	7 cut(s)	8, 11, 60, 238, 285, 458, 525
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	7 cut(s)	8, 11, 60, 238, 285, 458, 525
GsaI	CCCAGC	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	7 cut(s)	124, 348, 368, 381, 444, 533, 547
HapII	CCGG	3 cut(s)	205, 264, 534
HhaI	GCGC	1 cut(s)	101
Hin1I	GRCGYC	2 cut(s)	66, 99
Hin1II	CATG	1 cut(s)	479
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	149
HindII	GTYRAC	1 cut(s)	149
HinfI	GANTC	2 cut(s)	155, 180
HpaII	CCGG	3 cut(s)	205, 264, 534
HphI	GGTGA	2 cut(s)	40, 319
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	134, 560
Hpy188III	TCNNGA	5 cut(s)	75, 85, 205, 277, 488
Hpy8I	GTNNAC	1 cut(s)	149
Hpy99I	CGWCG	2 cut(s)	293, 296
HpyAV	CCTTC	2 cut(s)	101, 491
HpyCH4IV	ACGT	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 478, 530
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	2 cut(s)	66, 99
Hsp92II	CATG	1 cut(s)	479
HspAI	GCGC	1 cut(s)	99
KasI	GGCGCC	1 cut(s)	98
Kpn2I	TCCGGA	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	77, 134, 309, 540
Lsp1109I	GCAGC	2 cut(s)	19, 444
LweI	GCATC	1 cut(s)	48
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	4 cut(s)	79, 136, 311, 542
MboI	GATC	4 cut(s)	77, 134, 309, 540
MboII	GAAGA	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	1 cut(s)	450
Mly113I	GGCGCC	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	149, 174
MnlI	CCTC	6 cut(s)	175, 233, 254, 260, 319, 538
MroI	TCCGGA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	3 cut(s)	205, 264, 534
MspR9I	CCNGG	4 cut(s)	121, 264, 383, 535
MvaI	CCWGG	2 cut(s)	121, 383
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	284, 478, 530
NarI	GGCGCC	1 cut(s)	99
NciI	CCSGG	2 cut(s)	264, 535
NdeII	GATC	4 cut(s)	77, 134, 309, 540
NlaIII	CATG	1 cut(s)	479
NlaIV	GGNNCC	3 cut(s)	100, 330, 547
NmeAIII	GCCGAG	1 cut(s)	509
NmuCI	GTSAC	1 cut(s)	46
NruI	TCGCGA	1 cut(s)	278
OliI	CACNNNNGTG	1 cut(s)	357
PkrI	GCNGC	7 cut(s)	9, 12, 61, 239, 286, 459, 526
PleI	GAGTC	2 cut(s)	149, 174
PluTI	GGCGCC	1 cut(s)	102
PpsI	GAGTC	2 cut(s)	149, 174
PpuMI	RGGWCCY	1 cut(s)	328
Psp5II	RGGWCCY	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	119, 381
PspFI	CCCAGC	1 cut(s)	267
PspGI	CCWGG	2 cut(s)	119, 381
PspN4I	GGNNCC	3 cut(s)	100, 330, 547
PspOMI	GGGCCC	1 cut(s)	545
PspPI	GGNCC	9 cut(s)	123, 207, 328, 346, 366, 379, 442, 545, 546
PspPPI	RGGWCCY	1 cut(s)	328
RruI	TCGCGA	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	357
SalI	GTCGAC	1 cut(s)	147
SatI	GCNGC	7 cut(s)	8, 11, 60, 238, 285, 458, 525
Sau3AI	GATC	4 cut(s)	77, 134, 309, 540
Sau96I	GGNCC	9 cut(s)	123, 207, 328, 346, 366, 379, 442, 545, 546
SchI	GAGTC	2 cut(s)	149, 174
ScrFI	CCNGG	4 cut(s)	121, 264, 383, 535
SduI	GDGCHC	1 cut(s)	549
SetI	ASST	3 cut(s)	32, 69, 93
SfaNI	GCATC	1 cut(s)	48
SfoI	GGCGCC	1 cut(s)	100
SinI	GGWCC	2 cut(s)	207, 328
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	1 cut(s)	450
SspDI	GGCGCC	1 cut(s)	98
StyD4I	CCNGG	4 cut(s)	119, 262, 381, 533
StyI	CCWWGG	1 cut(s)	445
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	148
TasI	AATT	1 cut(s)	450
TauI	GCSGC	5 cut(s)	13, 62, 240, 287, 527
TscAI	CASTG	2 cut(s)	28, 424
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	7, 457
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	464
TspRI	CASTG	2 cut(s)	28, 424
VpaK11BI	GGWCC	2 cut(s)	207, 328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	148
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.