Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

6313498 .. 6313929

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22500

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCTGGGAGTAGTGCTAACATGCTTTGTAGGCAGAGCAGGTGGACTCCCACTACAGATCATATAAGAATCCTCAATGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTATTGGTTCGTGAACCAAAGGTCTCAGGAGAAGCAGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGATGATGACAAAGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCCGCTGGTGTGCTGATTGCTTTTAACGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

143

Amino Acids

16.3

Weight (kDa)

9.14

Isoelectric Point (pI)

65.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	6.5e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	78, 394
Acc36I	ACCTGC	3 cut(s)	78, 160, 394
AciI	CCGC	1 cut(s)	402
AclWI	GGATC	3 cut(s)	188, 363, 382
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	220
AluBI	AGCT	3 cut(s)	53, 130, 193
AluI	AGCT	3 cut(s)	53, 130, 193
Alw26I	GTCTC	2 cut(s)	191, 258
AlwI	GGATC	3 cut(s)	188, 363, 382
ApeKI	GCWGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	153, 276
AvaII	GGWCC	2 cut(s)	153, 276
BaeGI	GKGCMC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	191, 258
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	3 cut(s)	78, 160, 394
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme18I	GGWCC	2 cut(s)	153, 276
BmgT120I	GGNCC	2 cut(s)	153, 276
BmiI	GGNNCC	2 cut(s)	6, 155
BpmI	CTGGAG	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseMII	CTCAG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	2 cut(s)	15, 53
BsgI	GTGCAG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	139
BsmAI	GTCTC	2 cut(s)	191, 258
BsmFI	GGGAC	1 cut(s)	139
Bso31I	GGTCTC	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
BspACI	CCGC	1 cut(s)	402
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	6, 155
BspMI	ACCTGC	3 cut(s)	78, 160, 394
BspPI	GGATC	3 cut(s)	188, 363, 382
BspTNI	GGTCTC	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
Bst6I	CTCTTC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	6 cut(s)	109, 183, 213, 311, 358, 377
BstMAI	GTCTC	2 cut(s)	191, 258
BstMBI	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 401
BstNSI	RCATGY	1 cut(s)	73
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	180, 374
BstYI	RGATCY	2 cut(s)	180, 374
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	3 cut(s)	78, 160, 394
Cfr13I	GGNCC	2 cut(s)	153, 276
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	70, 293, 301, 350
CviJI	RGCY	4 cut(s)	53, 130, 193, 316
CviKI_1	RGCY	4 cut(s)	53, 130, 193, 316
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	6 cut(s)	108, 182, 212, 310, 357, 376
DpnII	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	153, 276
EcoO109I	RGGNCCY	1 cut(s)	153
FaeI	CATG	4 cut(s)	73, 296, 304, 353
FaiI	YATR	8 cut(s)	71, 111, 113, 164, 294, 302, 351, 363
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	4 cut(s)	69, 292, 300, 349
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	44, 299
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	2 cut(s)	19, 57
GsuI	CTGGAG	1 cut(s)	173
Hin1II	CATG	4 cut(s)	73, 296, 304, 353
HinfI	GANTC	2 cut(s)	94, 117
Hpy166II	GTNNAC	3 cut(s)	93, 244, 279
Hpy188I	TCNGA	2 cut(s)	177, 286
Hpy188III	TCNNGA	3 cut(s)	220, 241, 257
Hpy8I	GTNNAC	3 cut(s)	93, 244, 279
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	304, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 401
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	73, 296, 304, 353
Kzo9I	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
LpnPI	CCDG	9 cut(s)	29, 39, 73, 155, 203, 242, 297, 390, 399
Lsp1109I	GCAGC	1 cut(s)	62
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	6 cut(s)	108, 182, 212, 310, 357, 376
MboI	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
MboII	GAAGA	4 cut(s)	280, 283, 369, 390
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	2 cut(s)	180, 374
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	6 cut(s)	22, 29, 131, 171, 267, 346
MseI	TTAA	2 cut(s)	366, 423
MspA1I	CMGCKG	3 cut(s)	53, 193, 404
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	79, 401
NdeII	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
NlaIII	CATG	4 cut(s)	73, 296, 304, 353
NlaIV	GGNNCC	2 cut(s)	6, 155
NspI	RCATGY	1 cut(s)	73
PaqCI	CACCTGC	2 cut(s)	78, 394
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	2 cut(s)	15, 53
PspN4I	GGNNCC	2 cut(s)	6, 155
PspPI	GGNCC	2 cut(s)	153, 276
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	180, 374
PvuII	CAGCTG	2 cut(s)	53, 193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	366, 423
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	6 cut(s)	106, 180, 210, 308, 355, 374
Sau96I	GGNCC	2 cut(s)	153, 276
SchI	GAGTC	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	300
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	2 cut(s)	153, 276
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	1 cut(s)	402
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	366, 423
Tru9I	TTAA	2 cut(s)	366, 423
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	153, 276
XceI	RCATGY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.