Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

7795003 .. 7798315

Gene Structure 3313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0098900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1920 bp

ATGATCAGAAGACGACTCCGGCTGAGCTACTCTTCCGACGAAGAAGAGACCGTGACTCACCCACCTGTCACCCAAGCCCGTCCGAACCCTTACCCCTCGGAACCACTCCCAATCTCCTCCTCCTCCTCCGACGACGAGTTCATCGACGTCTCCGACAACCTCTCGCCGCCGTCTCCTCAGTTTCCGGAATCCGATAATCCACCGCCGCCTCCACCGAGCTCCGGCGGTTGTCCGGTTAGCGACTTTCTCCAGGGACTTGGCTTAAGGCTGAAGCGGGAGTGGTTGGATGCTTGCGTTTCGGGGCTCCAGCAATCCGTGCCGGGCTTTCGAAACCTGGACGCGGCGGCGAAGGCCAAGCTCTGCTTCGAGCAGTTCTTGGTTTCGGATATGAATCTCTCCGGCGGTGGCGTGCTTCCTCAGAACGTGGCCTCTCTTCATCTAGTTGATCTTCCAGGACCTTATGTGTTGCAGGTTGATGAGATTGTTAACATTAGCAATCCTTTGAAGATTAGGTATCAGAAAGCCTCTTCTGGACACAAGAGGTGCCTCAAGCTGTCGATGACCGACGGTGTTCAACGTGTTTTCGGTATGGAATACAGGCCCATTCAGGCCCTTGAAGCTTTGGCTCCTGCTGGATTGAAGGTTGTTGTGTGCAATGTACATATACGCCATGGACTTCTTATGCTGGTCCCTCAATCAATTGAAGTTCTAGGAGGATTAGTCGAAGAGCTGGATGCGGCACGGAAAAGGCTTGTTGATGAGGTGAATAAGCCACCAAGGGGAAACAGAACTAGGAATGGAGTAGTTCCTCCTCTAGCGAATAGGGCAGCCCTTGCTGCCTGGCCTCGTGATGGTGTTCATGTTGCTGGACAGGCTAATAGTTCCACATTCGGAGCCCCCACTCCCCTTCATGCGTCTTACCGAGATGCTGGTAGAAATAGCATTCCAATGACTACCCAAGAGACTGTTCCTCTACGTAGAGAACATGCTGTTTATCATCCATCATCTAATATCGGTGAAGAGATGCCTATGGATTCTATTCCCAATAGCAGAGAAAATGCTGGGCCTAACCCATCTTCTTATGGTTTTGGTGTTGAGAGACTCCATATAAACACTGTTCCTTATAGGAGGGAGAATTCGGTGCCTAATACTGCCATTCCTAACCCACCCAACCCACCCTTTGAGGATGCTTTGGATATTGAAGAGGACATTGATATGGATGCTGTTTCTATTAGCAGTGAAACTCATGGGGCTCGCCCGTCAATTTTGAATGATGATGATAGCCATCTGGTTAATGAGGATGAAACTCGTGTGCCTTACCCATACTCAGATGCTATTTTCAGTGACGAGGATACCAATGTCGTGAATGAGGTGGAGCACCCACTCCTAATGTTTGGAGAGCGAGAGCCCCCTTTCATTTACCTATCCAGTTTGTGGATCAGGTTCGAGACCAGTAACGTTCAATCTGTACGGGGAAAGGTTAAGTGTTTTTTGACTGGTGTCAAGGCTTTCCAATATAAGCAGAAATATGATCTCCGGGCATACATTGATGACGGCGGTATGATATCCGAGATTCTCATTGATCACAACGTTGTACAGAAGAGGATTGGCCATTCTCCCGAGGATGTCCAAGCCGGTCTTTCTTCCCCAGATAAGGCCGTAGTTTCCAAAATGAAGGAGAATATGAAGCAGTTCCAAGTTTTCTTAGCAAATTTCGAGGGGATAATGCTCATAGAGATAAGTAAAGGCTCTCCTCCAGTTGCCCTGGAGATGGATCAGGGCTGTCCTTCGTCTGATGCATGGCTGCTTTTGAGGAGACTAAAGGGCTCCCCTCCGGCTCAGACATCACAAAGTCGCTCCTCGCGCCTGGCTCAAAGGTCACAGAGTCTCTCCTCCCGCCCCATTGATATATCGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

639

Amino Acids

70.27

Weight (kDa)

5.49

Isoelectric Point (pI)

62.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RMI1_N_N	PF21000	87 - 132	1.7e-08	RMI1, N-terminal helical domain
RMI1_N_C	PF08585	138 - 249	8e-25	RMI1, N-terminal OB-fold domain
RMI1_C	PF16099	469 - 607	3.5e-32	Recq-mediated genome instability protein 1, C-terminal OB-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	460
AccB1I	GGYRCC	2 cut(s)	543, 1141
AccB7I	CCANNNNNTGG	1 cut(s)	1434
AccII	CGCG	2 cut(s)	341, 1864
AccIII	TCCGGA	1 cut(s)	184
AclI	AACGTT	2 cut(s)	1458, 1590
AclWI	GGATC	2 cut(s)	1445, 1782
AcoI	YGGCCR	1 cut(s)	1609
AcsI	RAATTY	2 cut(s)	1135, 1711
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	3 cut(s)	660, 1470, 1596
AfiI	CCNNNNNNNGG	7 cut(s)	221, 340, 779, 851, 1434, 1654, 1771
AflII	CTTAAG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	8 cut(s)	505, 575, 617, 640, 704, 1202, 1270, 1463
AjnI	CCWGG	6 cut(s)	249, 333, 451, 839, 1764, 1866
AjuI	GAANNNNNNNTTGG	4 cut(s)	347, 379, 951, 983
AluBI	AGCT	6 cut(s)	27, 219, 358, 553, 620, 730
AluI	AGCT	6 cut(s)	27, 219, 358, 553, 620, 730
Alw21I	GWGCWC	2 cut(s)	221, 1380
Alw26I	GTCTC	8 cut(s)	41, 154, 177, 956, 1093, 1442, 1810, 1892
AlwI	GGATC	2 cut(s)	1445, 1782
Ama87I	CYCGRG	1 cut(s)	1619
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	8 cut(s)	351, 426, 599, 609, 842, 1064, 1609, 1656
ApeKI	GCWGC	3 cut(s)	827, 836, 1804
ApoI	RAATTY	2 cut(s)	1135, 1711
Asp700I	GAANNNNTTC	1 cut(s)	1691
AspLEI	GCGC	1 cut(s)	1866
AspS9I	GGNCC	5 cut(s)	455, 600, 610, 688, 1064
AsuC2I	CCSGG	2 cut(s)	321, 1538
AsuHPI	GGTGA	4 cut(s)	50, 61, 775, 1028
AsuII	TTCGAA	1 cut(s)	328
AvaI	CYCGRG	1 cut(s)	1619
AvaII	GGWCC	2 cut(s)	455, 688
BaeI	ACNNNNGTAYC	2 cut(s)	1344, 1377
BalI	TGGCCA	1 cut(s)	1611
BanI	GGYRCC	2 cut(s)	543, 1141
BanII	GRGCYC	6 cut(s)	221, 306, 898, 1255, 1410, 1829
BauI	CACGAG	2 cut(s)	846, 1308
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	2 cut(s)	221, 1380
BbvI	GCAGC	3 cut(s)	823, 839, 1791
BccI	CCATC	5 cut(s)	845, 1009, 1081, 1293, 1765
BceAI	ACGGC	3 cut(s)	154, 1570, 1643
BciT130I	CCWGG	6 cut(s)	251, 335, 453, 841, 1766, 1868
BciVI	GTATCC	1 cut(s)	1345
BclI	TGATCA	2 cut(s)	3, 1582
BcnI	CCSGG	2 cut(s)	321, 1538
BcoDI	GTCTC	8 cut(s)	41, 154, 177, 956, 1093, 1442, 1810, 1892
BfaI	CTAG	4 cut(s)	440, 710, 792, 815
BfrI	CTTAAG	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	460
BfuI	GTATCC	1 cut(s)	1345
BisI	GCNGC	8 cut(s)	167, 206, 342, 345, 738, 828, 837, 1805
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	8 cut(s)	168, 207, 343, 346, 739, 829, 838, 1806
Bme1390I	CCNGG	8 cut(s)	251, 321, 335, 453, 841, 1538, 1766, 1868
Bme18I	GGWCC	2 cut(s)	455, 688
BmeT110I	CYCGRG	1 cut(s)	1619
BmgT120I	GGNCC	5 cut(s)	455, 600, 610, 688, 1064
BmiI	GGNNCC	8 cut(s)	102, 305, 545, 627, 690, 895, 1143, 1828
BmrFI	CCNGG	8 cut(s)	251, 321, 335, 453, 841, 1538, 1766, 1868
BmsI	GCATC	8 cut(s)	277, 724, 916, 1014, 1177, 1210, 1321, 1786
BoxI	GACNNNNGTC	1 cut(s)	1499
BpiI	GAAGAC	1 cut(s)	16
BpmI	CTGGAG	4 cut(s)	233, 290, 1740, 1787
Bpu1102I	GCTNAGC	1 cut(s)	23
Bpu14I	TTCGAA	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	2 cut(s)	321, 1538
BsaAI	YACGTR	1 cut(s)	977
BsaBI	GATNNNNATC	2 cut(s)	390, 1284
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	2 cut(s)	41, 1442
BsaJI	CCNNGG	6 cut(s)	96, 250, 670, 776, 1620, 1764
BsaWI	WCCGGW	2 cut(s)	184, 232
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	7 cut(s)	221, 340, 779, 851, 1434, 1654, 1771
Bse118I	RCCGGY	1 cut(s)	1634
Bse1I	ACTGG	4 cut(s)	1428, 1452, 1501, 1757
Bse3DI	GCAATG	1 cut(s)	661
Bse8I	GATNNNNATC	2 cut(s)	390, 1284
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	6 cut(s)	251, 335, 453, 841, 1766, 1868
BseDI	CCNNGG	6 cut(s)	96, 250, 670, 776, 1620, 1764
BseGI	GGATG	7 cut(s)	292, 739, 997, 1192, 1225, 1306, 1630
BseJI	GATNNNNATC	2 cut(s)	390, 1284
BseLI	CCNNNNNNNGG	7 cut(s)	221, 340, 779, 851, 1434, 1654, 1771
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	5 cut(s)	14, 191, 431, 1341, 1853
BseNI	ACTGG	4 cut(s)	1428, 1452, 1501, 1757
BseXI	GCAGC	3 cut(s)	823, 839, 1791
BseYI	CCCAGC	1 cut(s)	1061
Bsh1236I	CGCG	2 cut(s)	341, 1864
BshFI	GGCC	8 cut(s)	353, 428, 601, 611, 844, 1066, 1611, 1658
BshNI	GGYRCC	2 cut(s)	543, 1141
BsiHKAI	GWGCWC	2 cut(s)	221, 1380
BsiHKCI	CYCGRG	1 cut(s)	1619
BsiSI	CCGG	9 cut(s)	19, 185, 222, 233, 320, 399, 1537, 1635, 1835
BslFI	GGGAC	2 cut(s)	267, 674
BslI	CCNNNNNNNGG	7 cut(s)	221, 340, 779, 851, 1434, 1654, 1771
BsmAI	GTCTC	8 cut(s)	41, 154, 177, 956, 1093, 1442, 1810, 1892
BsmBI	CGTCTC	2 cut(s)	154, 177
BsmFI	GGGAC	2 cut(s)	267, 674
BsmI	GAATGC	1 cut(s)	942
BsnI	GGCC	8 cut(s)	353, 428, 601, 611, 844, 1066, 1611, 1658
Bso31I	GGTCTC	2 cut(s)	41, 1442
BsoBI	CYCGRG	1 cut(s)	1619
Bsp119I	TTCGAA	1 cut(s)	328
Bsp1286I	GDGCHC	7 cut(s)	221, 306, 898, 1255, 1380, 1410, 1829
Bsp13I	TCCGGA	1 cut(s)	184
Bsp1407I	TGTACA	2 cut(s)	658, 1594
Bsp143I	GATC	6 cut(s)	3, 445, 1437, 1531, 1582, 1774
Bsp1720I	GCTNAGC	1 cut(s)	23
Bsp19I	CCATGG	1 cut(s)	670
BspANI	GGCC	8 cut(s)	353, 428, 601, 611, 844, 1066, 1611, 1658
BspCNI	CTCAG	5 cut(s)	15, 190, 430, 1340, 1852
BspEI	TCCGGA	1 cut(s)	184
BspFNI	CGCG	2 cut(s)	341, 1864
BspLI	GGNNCC	8 cut(s)	102, 305, 545, 627, 690, 895, 1143, 1828
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	2 cut(s)	1445, 1782
BspQI	GCTCTTC	1 cut(s)	720
BspT104I	TTCGAA	1 cut(s)	328
BspT107I	GGYRCC	2 cut(s)	543, 1141
BspTI	CTTAAG	1 cut(s)	262
BspTNI	GGTCTC	2 cut(s)	41, 1442
BsrDI	GCAATG	1 cut(s)	661
BsrFI	RCCGGY	1 cut(s)	1634
BsrGI	TGTACA	2 cut(s)	658, 1594
BsrI	ACTGG	4 cut(s)	1428, 1452, 1501, 1757
BssAI	RCCGGY	1 cut(s)	1634
BssECI	CCNNGG	6 cut(s)	96, 250, 670, 776, 1620, 1764
BssMI	GATC	6 cut(s)	3, 445, 1437, 1531, 1582, 1774
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	2 cut(s)	846, 1308
BssT1I	CCWWGG	2 cut(s)	670, 776
Bst2BI	CACGAG	2 cut(s)	846, 1308
Bst2UI	CCWGG	6 cut(s)	251, 335, 453, 841, 1766, 1868
Bst4CI	ACNGT	4 cut(s)	52, 569, 967, 1117
Bst6I	CTCTTC	8 cut(s)	37, 39, 438, 532, 720, 1014, 1197, 1595
BstACI	GRCGYC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	262
BstAPI	GCANNNNNTGC	2 cut(s)	316, 833
BstAUI	TGTACA	2 cut(s)	658, 1594
BstBAI	YACGTR	1 cut(s)	977
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	3 cut(s)	292, 410, 1255
BstDEI	CTNAG	6 cut(s)	23, 177, 417, 1327, 1705, 1839
BstDSI	CCRYGG	1 cut(s)	670
BstF5I	GGATG	7 cut(s)	292, 739, 997, 1192, 1225, 1306, 1630
BstFNI	CGCG	2 cut(s)	341, 1864
BstHHI	GCGC	1 cut(s)	1866
BstKTI	GATC	6 cut(s)	6, 448, 1440, 1534, 1585, 1777
BstMAI	GTCTC	8 cut(s)	41, 154, 177, 956, 1093, 1442, 1810, 1892
BstMBI	GATC	6 cut(s)	3, 445, 1437, 1531, 1582, 1774
BstMWI	GCNNNNNNNGC	8 cut(s)	316, 350, 617, 824, 833, 836, 872, 1863
BstNI	CCWGG	6 cut(s)	251, 335, 453, 841, 1766, 1868
BstNSI	RCATGY	1 cut(s)	989
BstPAI	GACNNNNGTC	1 cut(s)	1499
BstSCI	CCNGG	8 cut(s)	249, 319, 333, 451, 839, 1536, 1764, 1866
BstSNI	TACGTA	1 cut(s)	977
BstUI	CGCG	2 cut(s)	341, 1864
BstV1I	GCAGC	3 cut(s)	823, 839, 1791
BstV2I	GAAGAC	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	1345
BsuRI	GGCC	8 cut(s)	353, 428, 601, 611, 844, 1066, 1611, 1658
BtgI	CCRYGG	1 cut(s)	670
BtsCI	GGATG	7 cut(s)	292, 739, 997, 1192, 1225, 1306, 1630
BtsI	GCAGTG	1 cut(s)	1243
BtsIMutI	CAGTG	3 cut(s)	1113, 1243, 1348
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	3 cut(s)	292, 410, 1255
CfoI	GCGC	1 cut(s)	1866
Cfr10I	RCCGGY	1 cut(s)	1634
Cfr13I	GGNCC	5 cut(s)	455, 600, 610, 688, 1064
CseI	GACGC	2 cut(s)	347, 903
Csp6I	GTAC	3 cut(s)	659, 1469, 1595
CviAII	CATG	6 cut(s)	671, 860, 911, 986, 1247, 1800
CviQI	GTAC	3 cut(s)	659, 1469, 1595
DdeI	CTNAG	6 cut(s)	23, 177, 417, 1327, 1705, 1839
DpnI	GATC	6 cut(s)	5, 447, 1439, 1533, 1584, 1776
DpnII	GATC	6 cut(s)	3, 445, 1437, 1531, 1582, 1774
EaeI	YGGCCR	1 cut(s)	1609
Eam1104I	CTCTTC	8 cut(s)	37, 39, 438, 532, 720, 1014, 1197, 1595
EarI	CTCTTC	8 cut(s)	37, 39, 438, 532, 720, 1014, 1197, 1595
Ecl136II	GAGCTC	1 cut(s)	219
Eco105I	TACGTA	1 cut(s)	977
Eco130I	CCWWGG	2 cut(s)	670, 776
Eco24I	GRGCYC	6 cut(s)	221, 306, 898, 1255, 1410, 1829
Eco31I	GGTCTC	2 cut(s)	41, 1442
Eco32I	GATATC	1 cut(s)	1566
Eco47I	GGWCC	2 cut(s)	455, 688
Eco53kI	GAGCTC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	1619
EcoICRI	GAGCTC	1 cut(s)	219
EcoO109I	RGGNCCY	2 cut(s)	455, 610
EcoRI	GAATTC	1 cut(s)	1135
EcoRII	CCWGG	6 cut(s)	249, 333, 451, 839, 1764, 1866
EcoRV	GATATC	1 cut(s)	1566
EcoT14I	CCWWGG	2 cut(s)	670, 776
EcoT22I	ATGCAT	1 cut(s)	1801
EcoT38I	GRGCYC	6 cut(s)	221, 306, 898, 1255, 1410, 1829
ErhI	CCWWGG	2 cut(s)	670, 776
Esp3I	CGTCTC	2 cut(s)	154, 177
FaeI	CATG	6 cut(s)	674, 863, 914, 989, 1250, 1803
FalI	AAGNNNNNCTT	4 cut(s)	347, 379, 1623, 1655
FaqI	GGGAC	2 cut(s)	267, 674
FatI	CATG	6 cut(s)	670, 859, 910, 985, 1246, 1799
FauI	CCCGC	2 cut(s)	267, 1904
FbaI	TGATCA	2 cut(s)	3, 1582
Fnu4HI	GCNGC	8 cut(s)	167, 206, 342, 345, 738, 828, 837, 1805
FokI	GGATG	7 cut(s)	299, 746, 984, 1199, 1232, 1313, 1637
FriOI	GRGCYC	6 cut(s)	221, 306, 898, 1255, 1410, 1829
Fsp4HI	GCNGC	8 cut(s)	167, 206, 342, 345, 738, 828, 837, 1805
FspBI	CTAG	4 cut(s)	440, 710, 792, 815
GlaI	GCGC	1 cut(s)	1865
GluI	GCNGC	8 cut(s)	167, 206, 342, 345, 738, 828, 837, 1805
GsaI	CCCAGC	1 cut(s)	1065
GsuI	CTGGAG	4 cut(s)	233, 290, 1740, 1787
HaeIII	GGCC	8 cut(s)	353, 428, 601, 611, 844, 1066, 1611, 1658
HapII	CCGG	9 cut(s)	19, 185, 222, 233, 320, 399, 1537, 1635, 1835
HgaI	GACGC	2 cut(s)	347, 903
HhaI	GCGC	1 cut(s)	1866
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	6 cut(s)	674, 863, 914, 989, 1250, 1803
Hin6I	GCGC	1 cut(s)	1864
HinP1I	GCGC	1 cut(s)	1864
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	618
HinfI	GANTC	8 cut(s)	15, 55, 188, 391, 1034, 1101, 1573, 1885
HpaI	GTTAAC	1 cut(s)	487
HpaII	CCGG	9 cut(s)	19, 185, 222, 233, 320, 399, 1537, 1635, 1835
HphI	GGTGA	4 cut(s)	50, 61, 775, 1028
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188III	TCNNGA	6 cut(s)	185, 531, 848, 1363, 1447, 1619
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	5 cut(s)	41, 134, 137, 149, 569
HpyAV	CCTTC	5 cut(s)	343, 634, 917, 1669, 1797
HpyCH4III	ACNGT	4 cut(s)	52, 569, 967, 1117
HpyCH4IV	ACGT	6 cut(s)	147, 423, 577, 976, 1458, 1590
HpyCH4V	TGCA	3 cut(s)	469, 654, 1799
HpyF10VI	GCNNNNNNNGC	8 cut(s)	316, 350, 617, 824, 833, 836, 872, 1863
HpyF3I	CTNAG	6 cut(s)	23, 177, 417, 1327, 1705, 1839
HpySE526I	ACGT	6 cut(s)	147, 423, 577, 976, 1458, 1590
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	6 cut(s)	674, 863, 914, 989, 1250, 1803
HspAI	GCGC	1 cut(s)	1864
Kpn2I	TCCGGA	1 cut(s)	184
Ksp22I	TGATCA	2 cut(s)	3, 1582
KspAI	GTTAAC	1 cut(s)	487
Kzo9I	GATC	6 cut(s)	3, 445, 1437, 1531, 1582, 1774
LguI	GCTCTTC	1 cut(s)	720
LmnI	GCTCC	7 cut(s)	224, 309, 631, 893, 1375, 1832, 1862
Lsp1109I	GCAGC	3 cut(s)	823, 839, 1791
LweI	GCATC	8 cut(s)	277, 724, 916, 1014, 1177, 1210, 1321, 1786
MaeI	CTAG	4 cut(s)	440, 710, 792, 815
MaeII	ACGT	6 cut(s)	147, 423, 577, 976, 1458, 1590
MaeIII	GTNAC	5 cut(s)	52, 67, 1343, 1454, 1878
MalI	GATC	6 cut(s)	5, 447, 1439, 1533, 1584, 1776
MboI	GATC	6 cut(s)	3, 445, 1437, 1531, 1582, 1774
MfeI	CAATTG	1 cut(s)	699
MhlI	GDGCHC	7 cut(s)	221, 306, 898, 1255, 1380, 1410, 1829
MlsI	TGGCCA	1 cut(s)	1611
MluCI	AATT	4 cut(s)	699, 1135, 1263, 1711
MluNI	TGGCCA	1 cut(s)	1611
MlyI	GAGTC	4 cut(s)	9, 49, 1095, 1894
MmeI	TCCRAC	4 cut(s)	60, 153, 177, 264
Mox20I	TGGCCA	1 cut(s)	1611
Mph1103I	ATGCAT	1 cut(s)	1801
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	1691
MscI	TGGCCA	1 cut(s)	1611
MseI	TTAA	4 cut(s)	263, 486, 1293, 1482
MslI	CAYNNNNRTG	2 cut(s)	947, 1214
Msp20I	TGGCCA	1 cut(s)	1611
MspCI	CTTAAG	1 cut(s)	262
MspI	CCGG	9 cut(s)	19, 185, 222, 233, 320, 399, 1537, 1635, 1835
MspR9I	CCNGG	8 cut(s)	251, 321, 335, 453, 841, 1538, 1766, 1868
MunI	CAATTG	1 cut(s)	699
Mva1269I	GAATGC	1 cut(s)	942
MvaI	CCWGG	6 cut(s)	251, 335, 453, 841, 1766, 1868
MvnI	CGCG	2 cut(s)	341, 1864
MwoI	GCNNNNNNNGC	8 cut(s)	316, 350, 617, 824, 833, 836, 872, 1863
NciI	CCSGG	2 cut(s)	321, 1538
NcoI	CCATGG	1 cut(s)	670
NdeII	GATC	6 cut(s)	3, 445, 1437, 1531, 1582, 1774
NlaIII	CATG	6 cut(s)	674, 863, 914, 989, 1250, 1803
NlaIV	GGNNCC	8 cut(s)	102, 305, 545, 627, 690, 895, 1143, 1828
NmuCI	GTSAC	4 cut(s)	52, 67, 1343, 1878
NsiI	ATGCAT	1 cut(s)	1801
NspI	RCATGY	1 cut(s)	989
NspV	TTCGAA	1 cut(s)	328
PciSI	GCTCTTC	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 150
PctI	GAATGC	1 cut(s)	942
PdmI	GAANNNNTTC	1 cut(s)	1691
PfeI	GAWTC	4 cut(s)	188, 391, 1034, 1573
PflMI	CCANNNNNTGG	1 cut(s)	1434
PfoI	TCCNGGA	1 cut(s)	451
PkrI	GCNGC	8 cut(s)	168, 207, 343, 346, 739, 829, 838, 1806
PleI	GAGTC	4 cut(s)	9, 49, 1095, 1893
PpsI	GAGTC	4 cut(s)	9, 49, 1095, 1893
Ppu21I	YACGTR	1 cut(s)	977
PpuMI	RGGWCCY	1 cut(s)	455
PshAI	GACNNNNGTC	1 cut(s)	1499
Psp124BI	GAGCTC	1 cut(s)	221
Psp1406I	AACGTT	2 cut(s)	1458, 1590
Psp5II	RGGWCCY	1 cut(s)	455
Psp6I	CCWGG	6 cut(s)	249, 333, 451, 839, 1764, 1866
PspFI	CCCAGC	1 cut(s)	1061
PspGI	CCWGG	6 cut(s)	249, 333, 451, 839, 1764, 1866
PspN4I	GGNNCC	8 cut(s)	102, 305, 545, 627, 690, 895, 1143, 1828
PspPI	GGNCC	5 cut(s)	455, 600, 610, 688, 1064
PspPPI	RGGWCCY	1 cut(s)	455
RsaI	GTAC	3 cut(s)	660, 1470, 1596
RsaNI	GTAC	3 cut(s)	659, 1469, 1595
RseI	CAYNNNNRTG	2 cut(s)	947, 1214
SacI	GAGCTC	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	720
SaqAI	TTAA	4 cut(s)	263, 486, 1293, 1482
SatI	GCNGC	8 cut(s)	167, 206, 342, 345, 738, 828, 837, 1805
Sau3AI	GATC	6 cut(s)	3, 445, 1437, 1531, 1582, 1774
Sau96I	GGNCC	5 cut(s)	455, 600, 610, 688, 1064
SchI	GAGTC	4 cut(s)	9, 49, 1095, 1894
ScrFI	CCNGG	8 cut(s)	251, 321, 335, 453, 841, 1538, 1766, 1868
SduI	GDGCHC	7 cut(s)	221, 306, 898, 1255, 1380, 1410, 1829
SfaNI	GCATC	8 cut(s)	277, 724, 916, 1014, 1177, 1210, 1321, 1786
SfuI	TTCGAA	1 cut(s)	328
SinI	GGWCC	2 cut(s)	455, 688
SmiMI	CAYNNNNRTG	2 cut(s)	947, 1214
SmlI	CTYRAG	2 cut(s)	262, 548
SmoI	CTYRAG	2 cut(s)	262, 548
SnaBI	TACGTA	1 cut(s)	977
Sse9I	AATT	4 cut(s)	699, 1135, 1263, 1711
SspMI	CTAG	4 cut(s)	440, 710, 792, 815
SstI	GAGCTC	1 cut(s)	221
StyD4I	CCNGG	8 cut(s)	249, 319, 333, 451, 839, 1536, 1764, 1866
StyI	CCWWGG	2 cut(s)	670, 776
TaaI	ACNGT	4 cut(s)	52, 569, 967, 1117
TaiI	ACGT	6 cut(s)	150, 426, 580, 979, 1461, 1593
TaqI	TCGA	7 cut(s)	144, 328, 366, 557, 723, 1446, 1716
TaqII	GACCGA	1 cut(s)	578
TasI	AATT	4 cut(s)	699, 1135, 1263, 1711
TatI	WGTACW	2 cut(s)	658, 1594
TauI	GCSGC	5 cut(s)	169, 208, 344, 347, 740
TfiI	GAWTC	4 cut(s)	188, 391, 1034, 1573
Tru1I	TTAA	4 cut(s)	263, 486, 1293, 1482
Tru9I	TTAA	4 cut(s)	263, 486, 1293, 1482
TscAI	CASTG	3 cut(s)	1120, 1243, 1348
TseFI	GTSAC	4 cut(s)	52, 67, 1343, 1878
TseI	GCWGC	3 cut(s)	827, 836, 1804
Tsp45I	GTSAC	4 cut(s)	52, 67, 1343, 1878
TspDTI	ATGAA	9 cut(s)	130, 404, 425, 848, 899, 1317, 1405, 1688, 1700
TspGWI	ACGGA	2 cut(s)	304, 757
TspRI	CASTG	3 cut(s)	1120, 1243, 1348
Van91I	CCANNNNNTGG	1 cut(s)	1434
Vha464I	CTTAAG	1 cut(s)	262
VpaK11BI	GGWCC	2 cut(s)	455, 688
XapI	RAATTY	2 cut(s)	1135, 1711
XceI	RCATGY	1 cut(s)	989
XmnI	GAANNNNTTC	1 cut(s)	1691
XspI	CTAG	4 cut(s)	440, 710, 792, 815
ZraI	GACGTC	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	1801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.