Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 179 - 225 | 4.2e-06 | PPR repeat family |
| PPR_2 | PF13041 | 384 - 428 | 4.1e-09 | PPR repeat family |
| PPR | PF01535 | 385 - 411 | 6.2e-08 | PPR repeat |
| PPR_2 | PF13041 | 481 - 529 | 1.7e-12 | PPR repeat family |
| PPR_1 | PF12854 | 482 - 509 | 5.1e-07 | PPR repeat |
| PPR | PF01535 | 484 - 514 | 3.3e-10 | PPR repeat |
| E_motif | PF20431 | 599 - 661 | 1.2e-13 | E motif |
| Eplus_motif | PF20430 | 667 - 693 | 7.3e-07 | E+ motif |
| DYW_deaminase | PF14432 | 697 - 789 | 2.1e-41 | DYW family of nucleic acid deaminases |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 855, 1730 |
| AatII | GACGTC | 1 cut(s) | 144 |
| Acc16I | TGCGCA | 1 cut(s) | 507 |
| Acc36I | ACCTGC | 1 cut(s) | 1921 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1630 |
| AccI | GTMKAC | 3 cut(s) | 875, 1090, 1178 |
| AccII | CGCG | 2 cut(s) | 416, 599 |
| AclWI | GGATC | 5 cut(s) | 1534, 1547, 1762, 1841, 1854 |
| AcoI | YGGCCR | 2 cut(s) | 1495, 2175 |
| AcsI | RAATTY | 5 cut(s) | 445, 1531, 1724, 1948, 2270 |
| AcuI | CTGAAG | 1 cut(s) | 1905 |
| AcvI | CACGTG | 1 cut(s) | 203 |
| AcyI | GRCGYC | 2 cut(s) | 141, 1151 |
| AfaI | GTAC | 2 cut(s) | 347, 452 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 73, 1550, 1630 |
| AflIII | ACRYGT | 2 cut(s) | 1380, 1999 |
| AgsI | TTSAA | 6 cut(s) | 247, 484, 1019, 1531, 1841, 2096 |
| AjnI | CCWGG | 3 cut(s) | 1750, 1963, 2206 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1540, 1572, 1903, 1935 |
| AleI | CACNNNNGTG | 2 cut(s) | 201, 959 |
| Alw21I | GWGCWC | 3 cut(s) | 956, 1285, 1668 |
| Alw26I | GTCTC | 5 cut(s) | 36, 609, 884, 1193, 2352 |
| AlwI | GGATC | 5 cut(s) | 1534, 1547, 1762, 1841, 1854 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 694, 1202, 1757, 2111 |
| AoxI | GGCC | 5 cut(s) | 75, 186, 1480, 1495, 2175 |
| ApeKI | GCWGC | 6 cut(s) | 24, 685, 1000, 1117, 1584, 1916 |
| ApoI | RAATTY | 5 cut(s) | 445, 1531, 1724, 1948, 2270 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 53, 515 |
| AspLEI | GCGC | 2 cut(s) | 418, 508 |
| AsuC2I | CCSGG | 3 cut(s) | 568, 871, 1220 |
| AsuII | TTCGAA | 1 cut(s) | 785 |
| BaeGI | GKGCMC | 1 cut(s) | 1656 |
| BalI | TGGCCA | 2 cut(s) | 1497, 2177 |
| BamHI | GGATCC | 2 cut(s) | 1539, 1846 |
| BbrPI | CACGTG | 1 cut(s) | 203 |
| BbsI | GAAGAC | 3 cut(s) | 205, 972, 1996 |
| Bbv12I | GWGCWC | 3 cut(s) | 956, 1285, 1668 |
| BbvCI | CCTCAGC | 1 cut(s) | 59 |
| BbvI | GCAGC | 6 cut(s) | 11, 672, 1012, 1129, 1596, 1903 |
| BccI | CCATC | 8 cut(s) | 371, 425, 553, 808, 1487, 1650, 2034, 2334 |
| BceAI | ACGGC | 2 cut(s) | 142, 822 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 989, 1023 |
| BciT130I | CCWGG | 3 cut(s) | 1752, 1965, 2208 |
| BciVI | GTATCC | 1 cut(s) | 532 |
| BcnI | CCSGG | 3 cut(s) | 568, 871, 1220 |
| BcoDI | GTCTC | 5 cut(s) | 36, 609, 884, 1193, 2352 |
| BfaI | CTAG | 4 cut(s) | 810, 1373, 1413, 2057 |
| BfmI | CTRYAG | 3 cut(s) | 686, 998, 1087 |
| BfuAI | ACCTGC | 1 cut(s) | 1921 |
| BfuI | GTATCC | 1 cut(s) | 532 |
| BisI | GCNGC | 8 cut(s) | 25, 372, 686, 1001, 1118, 1552, 1585, 1917 |
| BlpI | GCTNAGC | 2 cut(s) | 1284, 1662 |
| BlsI | GCNGC | 8 cut(s) | 26, 373, 687, 1002, 1119, 1553, 1586, 1918 |
| Bme1390I | CCNGG | 6 cut(s) | 568, 871, 1220, 1752, 1965, 2208 |
| BmiI | GGNNCC | 5 cut(s) | 460, 972, 1541, 1771, 1848 |
| BmrFI | CCNGG | 6 cut(s) | 568, 871, 1220, 1752, 1965, 2208 |
| BmrI | ACTGGG | 1 cut(s) | 774 |
| BmsI | GCATC | 4 cut(s) | 1060, 1958, 2043, 2302 |
| BmuI | ACTGGG | 1 cut(s) | 774 |
| BpiI | GAAGAC | 3 cut(s) | 205, 972, 1996 |
| Bpu10I | CCTNAGC | 1 cut(s) | 59 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1284, 1662 |
| Bpu14I | TTCGAA | 1 cut(s) | 785 |
| BpuEI | CTTGAG | 3 cut(s) | 167, 1364, 2016 |
| BpuMI | CCSGG | 3 cut(s) | 568, 871, 1220 |
| BsaAI | YACGTR | 2 cut(s) | 203, 454 |
| BsaHI | GRCGYC | 2 cut(s) | 141, 1151 |
| BsaI | GGTCTC | 1 cut(s) | 36 |
| BsaJI | CCNNGG | 1 cut(s) | 1486 |
| BsaWI | WCCGGW | 1 cut(s) | 45 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 158, 188 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 73, 1550, 1630 |
| Bse118I | RCCGGY | 1 cut(s) | 1741 |
| Bse1I | ACTGG | 3 cut(s) | 769, 1815, 2369 |
| Bse3DI | GCAATG | 3 cut(s) | 662, 1401, 2178 |
| BseBI | CCWGG | 3 cut(s) | 1752, 1965, 2208 |
| BseDI | CCNNGG | 1 cut(s) | 1486 |
| BseGI | GGATG | 7 cut(s) | 117, 711, 819, 831, 1051, 1973, 2026 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 73, 1550, 1630 |
| BseMI | GCAATG | 3 cut(s) | 662, 1401, 2178 |
| BseMII | CTCAG | 8 cut(s) | 73, 328, 522, 1185, 1224, 1298, 1428, 1653 |
| BseNI | ACTGG | 3 cut(s) | 769, 1815, 2369 |
| BseRI | GAGGAG | 3 cut(s) | 19, 56, 2144 |
| BseSI | GKGCMC | 1 cut(s) | 1656 |
| BseXI | GCAGC | 6 cut(s) | 11, 672, 1012, 1129, 1596, 1903 |
| BsgI | GTGCAG | 2 cut(s) | 734, 2187 |
| Bsh1236I | CGCG | 2 cut(s) | 416, 599 |
| BshFI | GGCC | 5 cut(s) | 77, 188, 1482, 1497, 2177 |
| BsiHKAI | GWGCWC | 3 cut(s) | 956, 1285, 1668 |
| BsiSI | CCGG | 7 cut(s) | 46, 567, 839, 870, 1219, 1742, 1927 |
| BslFI | GGGAC | 1 cut(s) | 817 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 73, 1550, 1630 |
| BsmAI | GTCTC | 5 cut(s) | 36, 609, 884, 1193, 2352 |
| BsmFI | GGGAC | 1 cut(s) | 817 |
| BsmI | GAATGC | 2 cut(s) | 1165, 1465 |
| BsnI | GGCC | 5 cut(s) | 77, 188, 1482, 1497, 2177 |
| Bso31I | GGTCTC | 1 cut(s) | 36 |
| Bsp119I | TTCGAA | 1 cut(s) | 785 |
| Bsp1286I | GDGCHC | 4 cut(s) | 956, 1285, 1656, 1668 |
| Bsp143I | GATC | 7 cut(s) | 864, 1167, 1539, 1754, 1846, 2017, 2283 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1284, 1662 |
| Bsp19I | CCATGG | 1 cut(s) | 1486 |
| BspANI | GGCC | 5 cut(s) | 77, 188, 1482, 1497, 2177 |
| BspCNI | CTCAG | 8 cut(s) | 72, 327, 523, 1184, 1225, 1297, 1429, 1654 |
| BspFNI | CGCG | 2 cut(s) | 416, 599 |
| BspHI | TCATGA | 1 cut(s) | 742 |
| BspLI | GGNNCC | 5 cut(s) | 460, 972, 1541, 1771, 1848 |
| BspMAI | CTGCAG | 2 cut(s) | 690, 1002 |
| BspMI | ACCTGC | 1 cut(s) | 1921 |
| BspPI | GGATC | 5 cut(s) | 1534, 1547, 1762, 1841, 1854 |
| BspT104I | TTCGAA | 1 cut(s) | 785 |
| BspTNI | GGTCTC | 1 cut(s) | 36 |
| BsrDI | GCAATG | 3 cut(s) | 662, 1401, 2178 |
| BsrFI | RCCGGY | 1 cut(s) | 1741 |
| BsrI | ACTGG | 3 cut(s) | 769, 1815, 2369 |
| BssAI | RCCGGY | 1 cut(s) | 1741 |
| BssECI | CCNNGG | 1 cut(s) | 1486 |
| BssMI | GATC | 7 cut(s) | 864, 1167, 1539, 1754, 1846, 2017, 2283 |
| BssNAI | GTATAC | 2 cut(s) | 876, 1179 |
| BssNI | GRCGYC | 2 cut(s) | 141, 1151 |
| BssT1I | CCWWGG | 1 cut(s) | 1486 |
| Bst1107I | GTATAC | 2 cut(s) | 876, 1179 |
| Bst2UI | CCWGG | 3 cut(s) | 1752, 1965, 2208 |
| Bst4CI | ACNGT | 8 cut(s) | 151, 544, 895, 1081, 1088, 1258, 1707, 2342 |
| Bst6I | CTCTTC | 3 cut(s) | 248, 1020, 2130 |
| BstACI | GRCGYC | 2 cut(s) | 141, 1151 |
| BstBAI | YACGTR | 2 cut(s) | 203, 454 |
| BstBI | TTCGAA | 1 cut(s) | 785 |
| BstC8I | GCNNGC | 2 cut(s) | 1582, 1675 |
| BstDEI | CTNAG | 9 cut(s) | 59, 314, 531, 1072, 1171, 1233, 1284, 1437, 1662 |
| BstDSI | CCRYGG | 1 cut(s) | 1486 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 71 |
| BstF5I | GGATG | 7 cut(s) | 117, 711, 819, 831, 1051, 1973, 2026 |
| BstFNI | CGCG | 2 cut(s) | 416, 599 |
| BstHHI | GCGC | 2 cut(s) | 418, 508 |
| BstKTI | GATC | 7 cut(s) | 867, 1170, 1542, 1757, 1849, 2020, 2286 |
| BstMAI | GTCTC | 5 cut(s) | 36, 609, 884, 1193, 2352 |
| BstMBI | GATC | 7 cut(s) | 864, 1167, 1539, 1754, 1846, 2017, 2283 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 275, 368, 415, 691, 866, 1747, 1820 |
| BstNI | CCWGG | 3 cut(s) | 1752, 1965, 2208 |
| BstNSI | RCATGY | 3 cut(s) | 1384, 1788, 2003 |
| BstSCI | CCNGG | 6 cut(s) | 566, 869, 1218, 1750, 1963, 2206 |
| BstSFI | CTRYAG | 3 cut(s) | 686, 998, 1087 |
| BstSLI | GKGCMC | 1 cut(s) | 1656 |
| BstUI | CGCG | 2 cut(s) | 416, 599 |
| BstV1I | GCAGC | 6 cut(s) | 11, 672, 1012, 1129, 1596, 1903 |
| BstV2I | GAAGAC | 3 cut(s) | 205, 972, 1996 |
| BstX2I | RGATCY | 3 cut(s) | 1539, 1754, 1846 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 469, 1493 |
| BstYI | RGATCY | 3 cut(s) | 1539, 1754, 1846 |
| BstZ17I | GTATAC | 2 cut(s) | 876, 1179 |
| BsuI | GTATCC | 1 cut(s) | 532 |
| BsuRI | GGCC | 5 cut(s) | 77, 188, 1482, 1497, 2177 |
| BtgI | CCRYGG | 1 cut(s) | 1486 |
| BtgZI | GCGATG | 1 cut(s) | 875 |
| BtsCI | GGATG | 7 cut(s) | 117, 711, 819, 831, 1051, 1973, 2026 |
| BtsI | GCAGTG | 1 cut(s) | 722 |
| BtsIMutI | CAGTG | 3 cut(s) | 722, 900, 1505 |
| BveI | ACCTGC | 1 cut(s) | 1921 |
| Cac8I | GCNNGC | 2 cut(s) | 1582, 1675 |
| CaiI | CAGNNNCTG | 4 cut(s) | 694, 1202, 1757, 2111 |
| CciI | TCATGA | 1 cut(s) | 742 |
| CfoI | GCGC | 2 cut(s) | 418, 508 |
| Cfr10I | RCCGGY | 1 cut(s) | 1741 |
| CseI | GACGC | 2 cut(s) | 605, 1140 |
| Csp6I | GTAC | 2 cut(s) | 346, 451 |
| CviQI | GTAC | 2 cut(s) | 346, 451 |
| DdeI | CTNAG | 9 cut(s) | 59, 314, 531, 1072, 1171, 1233, 1284, 1437, 1662 |
| DpnI | GATC | 7 cut(s) | 866, 1169, 1541, 1756, 1848, 2019, 2285 |
| DpnII | GATC | 7 cut(s) | 864, 1167, 1539, 1754, 1846, 2017, 2283 |
| DraI | TTTAAA | 1 cut(s) | 2335 |
| EaeI | YGGCCR | 2 cut(s) | 1495, 2175 |
| Eam1104I | CTCTTC | 3 cut(s) | 248, 1020, 2130 |
| EarI | CTCTTC | 3 cut(s) | 248, 1020, 2130 |
| EciI | GGCGGA | 2 cut(s) | 358, 695 |
| Eco130I | CCWWGG | 1 cut(s) | 1486 |
| Eco31I | GGTCTC | 1 cut(s) | 36 |
| Eco32I | GATATC | 2 cut(s) | 1209, 1470 |
| Eco57I | CTGAAG | 1 cut(s) | 1905 |
| Eco72I | CACGTG | 1 cut(s) | 203 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 71 |
| EcoRI | GAATTC | 1 cut(s) | 1531 |
| EcoRII | CCWGG | 3 cut(s) | 1750, 1963, 2206 |
| EcoRV | GATATC | 2 cut(s) | 1209, 1470 |
| EcoT14I | CCWWGG | 1 cut(s) | 1486 |
| ErhI | CCWWGG | 1 cut(s) | 1486 |
| FaqI | GGGAC | 1 cut(s) | 817 |
| FauI | CCCGC | 3 cut(s) | 619, 694, 785 |
| FblI | GTMKAC | 3 cut(s) | 875, 1090, 1178 |
| Fnu4HI | GCNGC | 8 cut(s) | 25, 372, 686, 1001, 1118, 1552, 1585, 1917 |
| FokI | GGATG | 7 cut(s) | 104, 718, 826, 838, 1038, 1980, 2013 |
| Fsp4HI | GCNGC | 8 cut(s) | 25, 372, 686, 1001, 1118, 1552, 1585, 1917 |
| FspBI | CTAG | 4 cut(s) | 810, 1373, 1413, 2057 |
| FspI | TGCGCA | 1 cut(s) | 507 |
| GlaI | GCGC | 2 cut(s) | 417, 507 |
| GluI | GCNGC | 8 cut(s) | 25, 372, 686, 1001, 1118, 1552, 1585, 1917 |
| HaeIII | GGCC | 5 cut(s) | 77, 188, 1482, 1497, 2177 |
| HapII | CCGG | 7 cut(s) | 46, 567, 839, 870, 1219, 1742, 1927 |
| HgaI | GACGC | 2 cut(s) | 605, 1140 |
| HhaI | GCGC | 2 cut(s) | 418, 508 |
| Hin1I | GRCGYC | 2 cut(s) | 141, 1151 |
| Hin6I | GCGC | 2 cut(s) | 416, 506 |
| HinP1I | GCGC | 2 cut(s) | 416, 506 |
| HincII | GTYRAC | 4 cut(s) | 1365, 1378, 1684, 2067 |
| HindII | GTYRAC | 4 cut(s) | 1365, 1378, 1684, 2067 |
| HinfI | GANTC | 9 cut(s) | 644, 1106, 1130, 1300, 1346, 1960, 2223, 2233, 2322 |
| HpaI | GTTAAC | 1 cut(s) | 2067 |
| HpaII | CCGG | 7 cut(s) | 46, 567, 839, 870, 1219, 1742, 1927 |
| Hpy188I | TCNGA | 5 cut(s) | 178, 317, 1234, 1828, 2222 |
| Hpy188III | TCNNGA | 4 cut(s) | 743, 1343, 1850, 2230 |
| Hpy99I | CGWCG | 4 cut(s) | 143, 146, 524, 1901 |
| HpyAV | CCTTC | 8 cut(s) | 229, 294, 505, 529, 1065, 1601, 1708, 2134 |
| HpyCH4III | ACNGT | 8 cut(s) | 151, 544, 895, 1081, 1088, 1258, 1707, 2342 |
| HpyCH4IV | ACGT | 5 cut(s) | 141, 202, 249, 453, 1816 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 275, 368, 415, 691, 866, 1747, 1820 |
| HpyF3I | CTNAG | 9 cut(s) | 59, 314, 531, 1072, 1171, 1233, 1284, 1437, 1662 |
| HpySE526I | ACGT | 5 cut(s) | 141, 202, 249, 453, 1816 |
| Hsp92I | GRCGYC | 2 cut(s) | 141, 1151 |
| HspAI | GCGC | 2 cut(s) | 416, 506 |
| KspAI | GTTAAC | 1 cut(s) | 2067 |
| Kzo9I | GATC | 7 cut(s) | 864, 1167, 1539, 1754, 1846, 2017, 2283 |
| LmnI | GCTCC | 9 cut(s) | 32, 414, 682, 691, 796, 1292, 1398, 1769, 2143 |
| Lsp1109I | GCAGC | 6 cut(s) | 11, 672, 1012, 1129, 1596, 1903 |
| LweI | GCATC | 4 cut(s) | 1060, 1958, 2043, 2302 |
| MaeI | CTAG | 4 cut(s) | 810, 1373, 1413, 2057 |
| MaeII | ACGT | 5 cut(s) | 141, 202, 249, 453, 1816 |
| MaeIII | GTNAC | 9 cut(s) | 145, 151, 203, 584, 1075, 1252, 1258, 1450, 1988 |
| MalI | GATC | 7 cut(s) | 866, 1169, 1541, 1756, 1848, 2019, 2285 |
| MboI | GATC | 7 cut(s) | 864, 1167, 1539, 1754, 1846, 2017, 2283 |
| MboII | GAAGA | 9 cut(s) | 46, 205, 235, 282, 972, 1007, 1612, 1996, 2147 |
| MfeI | CAATTG | 1 cut(s) | 957 |
| MflI | RGATCY | 3 cut(s) | 1539, 1754, 1846 |
| MhlI | GDGCHC | 4 cut(s) | 956, 1285, 1656, 1668 |
| MlsI | TGGCCA | 2 cut(s) | 1497, 2177 |
| MluNI | TGGCCA | 2 cut(s) | 1497, 2177 |
| MlyI | GAGTC | 5 cut(s) | 1115, 1139, 1309, 1355, 1954 |
| MmeI | TCCRAC | 1 cut(s) | 201 |
| Mox20I | TGGCCA | 2 cut(s) | 1497, 2177 |
| MroXI | GAANNNNTTC | 2 cut(s) | 53, 515 |
| MscI | TGGCCA | 2 cut(s) | 1497, 2177 |
| MseI | TTAA | 6 cut(s) | 915, 945, 1329, 1518, 2066, 2334 |
| MslI | CAYNNNNRTG | 6 cut(s) | 201, 467, 747, 959, 1358, 1491 |
| Msp20I | TGGCCA | 2 cut(s) | 1497, 2177 |
| MspI | CCGG | 7 cut(s) | 46, 567, 839, 870, 1219, 1742, 1927 |
| MspR9I | CCNGG | 6 cut(s) | 568, 871, 1220, 1752, 1965, 2208 |
| MunI | CAATTG | 1 cut(s) | 957 |
| Mva1269I | GAATGC | 2 cut(s) | 1165, 1465 |
| MvaI | CCWGG | 3 cut(s) | 1752, 1965, 2208 |
| MvnI | CGCG | 2 cut(s) | 416, 599 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 275, 368, 415, 691, 866, 1747, 1820 |
| NciI | CCSGG | 3 cut(s) | 568, 871, 1220 |
| NcoI | CCATGG | 1 cut(s) | 1486 |
| NdeII | GATC | 7 cut(s) | 864, 1167, 1539, 1754, 1846, 2017, 2283 |
| NlaIV | GGNNCC | 5 cut(s) | 460, 972, 1541, 1771, 1848 |
| NmuCI | GTSAC | 5 cut(s) | 145, 151, 203, 1450, 1988 |
| NsbI | TGCGCA | 1 cut(s) | 507 |
| NspI | RCATGY | 3 cut(s) | 1384, 1788, 2003 |
| NspV | TTCGAA | 1 cut(s) | 785 |
| OliI | CACNNNNGTG | 2 cut(s) | 201, 959 |
| PagI | TCATGA | 1 cut(s) | 742 |
| PciI | ACATGT | 2 cut(s) | 1380, 1999 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 147, 199, 782 |
| PctI | GAATGC | 2 cut(s) | 1165, 1465 |
| PdmI | GAANNNNTTC | 2 cut(s) | 53, 515 |
| PfeI | GAWTC | 4 cut(s) | 644, 2223, 2233, 2322 |
| PflFI | GACNNNGTC | 2 cut(s) | 143, 209 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1630 |
| PfoI | TCCNGGA | 2 cut(s) | 1218, 1963 |
| PkrI | GCNGC | 8 cut(s) | 26, 373, 687, 1002, 1119, 1553, 1586, 1918 |
| PleI | GAGTC | 5 cut(s) | 1114, 1138, 1308, 1354, 1954 |
| PmaCI | CACGTG | 1 cut(s) | 203 |
| PmlI | CACGTG | 1 cut(s) | 203 |
| PpsI | GAGTC | 5 cut(s) | 1114, 1138, 1308, 1354, 1954 |
| Ppu21I | YACGTR | 2 cut(s) | 203, 454 |
| PscI | ACATGT | 2 cut(s) | 1380, 1999 |
| PsiI | TTATAA | 2 cut(s) | 855, 1730 |
| Psp6I | CCWGG | 3 cut(s) | 1750, 1963, 2206 |
| PspCI | CACGTG | 1 cut(s) | 203 |
| PspGI | CCWGG | 3 cut(s) | 1750, 1963, 2206 |
| PspN4I | GGNNCC | 5 cut(s) | 460, 972, 1541, 1771, 1848 |
| PstI | CTGCAG | 2 cut(s) | 690, 1002 |
| PstNI | CAGNNNCTG | 4 cut(s) | 694, 1202, 1757, 2111 |
| PsuI | RGATCY | 3 cut(s) | 1539, 1754, 1846 |
| PsyI | GACNNNGTC | 2 cut(s) | 143, 209 |
| RsaI | GTAC | 2 cut(s) | 347, 452 |
| RsaNI | GTAC | 2 cut(s) | 346, 451 |
| RseI | CAYNNNNRTG | 6 cut(s) | 201, 467, 747, 959, 1358, 1491 |
| SaqAI | TTAA | 6 cut(s) | 915, 945, 1329, 1518, 2066, 2334 |
| SatI | GCNGC | 8 cut(s) | 25, 372, 686, 1001, 1118, 1552, 1585, 1917 |
| Sau3AI | GATC | 7 cut(s) | 864, 1167, 1539, 1754, 1846, 2017, 2283 |
| SchI | GAGTC | 5 cut(s) | 1115, 1139, 1309, 1355, 1954 |
| ScrFI | CCNGG | 6 cut(s) | 568, 871, 1220, 1752, 1965, 2208 |
| SduI | GDGCHC | 4 cut(s) | 956, 1285, 1656, 1668 |
| SfaNI | GCATC | 4 cut(s) | 1060, 1958, 2043, 2302 |
| SfcI | CTRYAG | 3 cut(s) | 686, 998, 1087 |
| SfuI | TTCGAA | 1 cut(s) | 785 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 201, 467, 747, 959, 1358, 1491 |
| SmlI | CTYRAG | 3 cut(s) | 182, 1343, 2031 |
| SmoI | CTYRAG | 3 cut(s) | 182, 1343, 2031 |
| SspMI | CTAG | 4 cut(s) | 810, 1373, 1413, 2057 |
| StyD4I | CCNGG | 6 cut(s) | 566, 869, 1218, 1750, 1963, 2206 |
| StyI | CCWWGG | 1 cut(s) | 1486 |
| TaaI | ACNGT | 8 cut(s) | 151, 544, 895, 1081, 1088, 1258, 1707, 2342 |
| TaiI | ACGT | 5 cut(s) | 144, 205, 252, 456, 1819 |
| TaqI | TCGA | 8 cut(s) | 293, 443, 491, 519, 647, 785, 950, 1064 |
| TatI | WGTACW | 1 cut(s) | 345 |
| TauI | GCSGC | 2 cut(s) | 374, 1554 |
| TfiI | GAWTC | 4 cut(s) | 644, 2223, 2233, 2322 |
| Tru1I | TTAA | 6 cut(s) | 915, 945, 1329, 1518, 2066, 2334 |
| Tru9I | TTAA | 6 cut(s) | 915, 945, 1329, 1518, 2066, 2334 |
| TscAI | CASTG | 3 cut(s) | 722, 900, 1512 |
| TseFI | GTSAC | 5 cut(s) | 145, 151, 203, 1450, 1988 |
| TseI | GCWGC | 6 cut(s) | 24, 685, 1000, 1117, 1584, 1916 |
| Tsp45I | GTSAC | 5 cut(s) | 145, 151, 203, 1450, 1988 |
| TspDTI | ATGAA | 8 cut(s) | 276, 731, 743, 1307, 1515, 1625, 1629, 2150 |
| TspRI | CASTG | 3 cut(s) | 722, 900, 1512 |
| Tth111I | GACNNNGTC | 2 cut(s) | 143, 209 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1630 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 71 |
| XapI | RAATTY | 5 cut(s) | 445, 1531, 1724, 1948, 2270 |
| XceI | RCATGY | 3 cut(s) | 1384, 1788, 2003 |
| XmiI | GTMKAC | 3 cut(s) | 875, 1090, 1178 |
| XmnI | GAANNNNTTC | 2 cut(s) | 53, 515 |
| XspI | CTAG | 4 cut(s) | 810, 1373, 1413, 2057 |
| ZraI | GACGTC | 1 cut(s) | 142 |