Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Reverse (-)

25201110 .. 25207251

Gene Structure 6142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0267100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTTTACATGCATAGCATGTACGAAGCAACCGGAAGACGACGGAGGAGAGCGTGGGAGTGGCACCCCAAGTACAAAAGAAGCCGTCAAAAGCCTGACCACGCAGATCAAGGATATGGCATTGAAATTCTCCGGTGCGTACAAGCAATGCAAACCATGCACAGGATCAAGCAGTAGCTTCAAGAAAGGGCAAAGGAGACCTTACCCTGATTTTGATACTGCTTCTGAAGGGGTTCCATACCCTTATGCTGCAAGCTCAAGTTCTACACCTGCTTGGGACTTCACCTCTAATCATCAACTTGGTGCAAGATCAGACTCGAGATTCACTCGACCATATGGCGGTGGTGGTGATCCGACTCGAGATTCAACGTGTGAGGTTGTGTTAGAGGATGAGGATGAGCCCAAGGAGTGGATGGCACAGGTCGAACCAGGAGTGCACATCACCTTTGTGTCGCTTCCTAATGGGGGAAATGATCTTAAACGAATTCGCTTCAGCCGAGAGATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGTGAGAATTATGACCGCATAATGGAGCTCTACAATGTCCAGAGATTCAACCGGCAAGCTCTTCACACTCCACCAAGGTCTGAAGATGAGCCACCAAGAGAATCCTTTTACTCGAGGATGGACTCTGCTAGAGAAAGCCCTATGGTTCCAACAAACTGGACACCACGGCACCACTACAAACCCTCTGGAGCTGGAAGCGGAGGATACTTCCCATCTGATGGTCATCAGTATAATGCAGGTGGATCTATTGATGCATCGCGAACGACAACCTCATCTAGAGATGAAGCTTCCGTCTCTATTAGCAATGCTAGTGAGGTGGAGTCCGAATGGGTTGAACAAGATGAACCTGGGGTCTATATAACCATTCGACAGCTAGCCGATGGCACTAGGGAGCTCCGGCGTGTTAGGTTCAGTCGCGAAAGGTTTGGGGAGAGGAATGCGAAGACATGGTGGGAAGAAAACCGAGAGAGAATACAAGCTCAATACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

341

Amino Acids

38.68

Weight (kDa)

5.98

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRX_N	PF13713	18 - 53	3.4e-17	Transcription factor BRX N-terminal domain
BRX	PF08381	135 - 189	3e-26	Transcription factor regulating root and shoot growth via Pin3
BRX	PF08381	285 - 340	1.9e-27	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	277, 761
Acc36I	ACCTGC	2 cut(s)	277, 761
AccB1I	GGYRCC	2 cut(s)	62, 702
AccB7I	CCANNNNNTGG	2 cut(s)	408, 752
AccII	CGCG	2 cut(s)	793, 951
AciI	CCGC	3 cut(s)	339, 550, 732
AclWI	GGATC	3 cut(s)	172, 344, 784
AcsI	RAATTY	2 cut(s)	125, 483
AcuI	CTGAAG	3 cut(s)	246, 475, 636
AfaI	GTAC	3 cut(s)	22, 73, 140
AfiI	CCNNNNNNNGG	6 cut(s)	161, 338, 408, 464, 556, 752
AflIII	ACRYGT	1 cut(s)	368
AgsI	TTSAA	5 cut(s)	124, 181, 366, 583, 869
AjnI	CCWGG	2 cut(s)	427, 880
AleI	CACNNNNGTG	1 cut(s)	446
Alw21I	GWGCWC	3 cut(s)	438, 564, 930
Alw26I	GTCTC	2 cut(s)	190, 832
Alw44I	GTGCAC	1 cut(s)	434
AlwI	GGATC	3 cut(s)	172, 344, 784
Ama87I	CYCGRG	3 cut(s)	316, 357, 646
ApaLI	GTGCAC	1 cut(s)	434
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	125, 483
Asp700I	GAANNNNTTC	1 cut(s)	231
AsuHPI	GGTGA	4 cut(s)	274, 359, 433, 548
AsuNHI	GCTAGC	1 cut(s)	907
AvaI	CYCGRG	3 cut(s)	316, 357, 646
BaeGI	GKGCMC	1 cut(s)	438
BanI	GGYRCC	2 cut(s)	62, 702
BanII	GRGCYC	3 cut(s)	402, 564, 930
BbsI	GAAGAC	2 cut(s)	42, 983
Bbv12I	GWGCWC	3 cut(s)	438, 564, 930
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	6 cut(s)	406, 522, 646, 746, 754, 908
BceAI	ACGGC	2 cut(s)	68, 716
BciT130I	CCWGG	2 cut(s)	429, 882
BciVI	GTATCC	1 cut(s)	731
BcoDI	GTCTC	2 cut(s)	190, 832
BfaI	CTAG	5 cut(s)	663, 810, 843, 908, 921
BfuAI	ACCTGC	2 cut(s)	277, 761
BfuI	GTATCC	1 cut(s)	731
BisI	GCNGC	1 cut(s)	249
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	429, 882
BmeT110I	CYCGRG	3 cut(s)	316, 357, 646
BmiI	GGNNCC	4 cut(s)	64, 234, 681, 704
BmrFI	CCNGG	2 cut(s)	429, 882
BmsI	GCATC	2 cut(s)	775, 797
BmtI	GCTAGC	1 cut(s)	911
BpiI	GAAGAC	2 cut(s)	42, 983
BplI	GAGNNNNNCTC	2 cut(s)	310, 342
BpmI	CTGGAG	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	756
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	4 cut(s)	402, 608, 698, 881
BsaWI	WCCGGW	2 cut(s)	31, 131
Bsc4I	CCNNNNNNNGG	6 cut(s)	161, 338, 408, 464, 556, 752
Bse118I	RCCGGY	1 cut(s)	585
Bse1I	ACTGG	1 cut(s)	695
Bse3DI	GCAATG	2 cut(s)	152, 844
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	2 cut(s)	429, 882
BseDI	CCNNGG	4 cut(s)	402, 608, 698, 881
BseGI	GGATG	4 cut(s)	394, 400, 417, 657
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	6 cut(s)	161, 338, 408, 464, 556, 752
BseMI	GCAATG	2 cut(s)	152, 844
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	235
Bsh1236I	CGCG	2 cut(s)	793, 951
BshNI	GGYRCC	2 cut(s)	62, 702
BsiHKAI	GWGCWC	3 cut(s)	438, 564, 930
BsiHKCI	CYCGRG	3 cut(s)	316, 357, 646
BsiSI	CCGG	4 cut(s)	32, 132, 586, 931
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	6 cut(s)	161, 338, 408, 464, 556, 752
BsmAI	GTCTC	2 cut(s)	190, 832
BsmBI	CGTCTC	1 cut(s)	832
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	976
Bso31I	GGTCTC	1 cut(s)	190
BsoBI	CYCGRG	3 cut(s)	316, 357, 646
Bsp1286I	GDGCHC	4 cut(s)	402, 438, 564, 930
Bsp143I	GATC	6 cut(s)	105, 164, 308, 349, 472, 776
Bsp1720I	GCTNAGC	1 cut(s)	522
Bsp68I	TCGCGA	2 cut(s)	793, 951
BspACI	CCGC	3 cut(s)	339, 550, 732
BspCNI	CTCAG	1 cut(s)	535
BspFNI	CGCG	2 cut(s)	793, 951
BspLI	GGNNCC	4 cut(s)	64, 234, 681, 704
BspMI	ACCTGC	2 cut(s)	277, 761
BspOI	GCTAGC	1 cut(s)	911
BspPI	GGATC	3 cut(s)	172, 344, 784
BspQI	GCTCTTC	1 cut(s)	600
BspT107I	GGYRCC	2 cut(s)	62, 702
BspTNI	GGTCTC	1 cut(s)	190
BsrDI	GCAATG	2 cut(s)	152, 844
BsrFI	RCCGGY	1 cut(s)	585
BsrI	ACTGG	1 cut(s)	695
BssAI	RCCGGY	1 cut(s)	585
BssECI	CCNNGG	4 cut(s)	402, 608, 698, 881
BssMI	GATC	6 cut(s)	105, 164, 308, 349, 472, 776
BssT1I	CCWWGG	2 cut(s)	402, 608
Bst2UI	CCWGG	2 cut(s)	429, 882
Bst6I	CTCTTC	1 cut(s)	600
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	4 cut(s)	253, 519, 591, 909
BstDEI	CTNAG	1 cut(s)	522
BstDSI	CCRYGG	1 cut(s)	698
BstF5I	GGATG	4 cut(s)	394, 400, 417, 657
BstFNI	CGCG	2 cut(s)	793, 951
BstKTI	GATC	6 cut(s)	108, 167, 311, 352, 475, 779
BstMAI	GTCTC	2 cut(s)	190, 832
BstMBI	GATC	6 cut(s)	105, 164, 308, 349, 472, 776
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 523
BstNI	CCWGG	2 cut(s)	429, 882
BstNSI	RCATGY	2 cut(s)	12, 21
BstSCI	CCNGG	2 cut(s)	427, 880
BstSLI	GKGCMC	1 cut(s)	438
BstUI	CGCG	2 cut(s)	793, 951
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	2 cut(s)	42, 983
BstX2I	RGATCY	1 cut(s)	776
BstXI	CCANNNNNNTGG	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	776
BsuI	GTATCC	1 cut(s)	731
BtgI	CCRYGG	1 cut(s)	698
BtgZI	GCGATG	2 cut(s)	541, 774
BtsCI	GGATG	4 cut(s)	394, 400, 417, 657
BtuMI	TCGCGA	2 cut(s)	793, 951
BveI	ACCTGC	2 cut(s)	277, 761
Cac8I	GCNNGC	4 cut(s)	253, 519, 591, 909
Cfr10I	RCCGGY	1 cut(s)	585
Csp6I	GTAC	3 cut(s)	21, 72, 139
CviAII	CATG	4 cut(s)	9, 18, 156, 981
CviQI	GTAC	3 cut(s)	21, 72, 139
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	6 cut(s)	107, 166, 310, 351, 474, 778
DpnII	GATC	6 cut(s)	105, 164, 308, 349, 472, 776
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Ecl136II	GAGCTC	2 cut(s)	562, 928
Eco130I	CCWWGG	2 cut(s)	402, 608
Eco24I	GRGCYC	3 cut(s)	402, 564, 930
Eco31I	GGTCTC	1 cut(s)	190
Eco53kI	GAGCTC	2 cut(s)	562, 928
Eco57I	CTGAAG	3 cut(s)	246, 475, 636
Eco88I	CYCGRG	3 cut(s)	316, 357, 646
EcoICRI	GAGCTC	2 cut(s)	562, 928
EcoRI	GAATTC	1 cut(s)	483
EcoRII	CCWGG	2 cut(s)	427, 880
EcoT14I	CCWWGG	2 cut(s)	402, 608
EcoT22I	ATGCAT	2 cut(s)	14, 790
EcoT38I	GRGCYC	3 cut(s)	402, 564, 930
ErhI	CCWWGG	2 cut(s)	402, 608
Esp3I	CGTCTC	1 cut(s)	832
FaeI	CATG	4 cut(s)	12, 21, 159, 984
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	4 cut(s)	8, 17, 155, 980
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	4 cut(s)	401, 407, 424, 664
FriOI	GRGCYC	3 cut(s)	402, 564, 930
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	5 cut(s)	663, 810, 843, 908, 921
GluI	GCNGC	1 cut(s)	249
GsuI	CTGGAG	1 cut(s)	741
HapII	CCGG	4 cut(s)	32, 132, 586, 931
Hin1II	CATG	4 cut(s)	12, 21, 159, 984
HindIII	AAGCTT	1 cut(s)	819
HinfI	GANTC	8 cut(s)	314, 321, 355, 362, 579, 635, 656, 854
HpaII	CCGG	4 cut(s)	32, 132, 586, 931
HphI	GGTGA	4 cut(s)	274, 359, 433, 548
Hpy166II	GTNNAC	2 cut(s)	6, 436
Hpy188I	TCNGA	6 cut(s)	226, 313, 354, 616, 751, 859
Hpy188III	TCNNGA	8 cut(s)	181, 318, 359, 574, 720, 792, 810, 950
Hpy8I	GTNNAC	2 cut(s)	6, 436
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	8 cut(s)	12, 150, 159, 251, 305, 436, 770, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 523
HpyF3I	CTNAG	1 cut(s)	522
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	4 cut(s)	12, 21, 159, 984
Kzo9I	GATC	6 cut(s)	105, 164, 308, 349, 472, 776
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	4 cut(s)	559, 722, 925, 933
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	2 cut(s)	775, 797
MaeI	CTAG	5 cut(s)	663, 810, 843, 908, 921
MaeII	ACGT	1 cut(s)	368
MalI	GATC	6 cut(s)	107, 166, 310, 351, 474, 778
MboI	GATC	6 cut(s)	105, 164, 308, 349, 472, 776
MboII	GAAGA	5 cut(s)	47, 587, 629, 988, 1001
MflI	RGATCY	1 cut(s)	776
MhlI	GDGCHC	4 cut(s)	402, 438, 564, 930
MluCI	AATT	3 cut(s)	125, 483, 541
MlyI	GAGTC	4 cut(s)	308, 349, 650, 863
MmeI	TCCRAC	2 cut(s)	377, 707
Mph1103I	ATGCAT	2 cut(s)	14, 790
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	3 cut(s)	477, 507, 1024
MslI	CAYNNNNRTG	1 cut(s)	446
MspI	CCGG	4 cut(s)	32, 132, 586, 931
MspR9I	CCNGG	2 cut(s)	429, 882
Mva1269I	GAATGC	1 cut(s)	976
MvaI	CCWGG	2 cut(s)	429, 882
MvnI	CGCG	2 cut(s)	793, 951
MwoI	GCNNNNNNNGC	2 cut(s)	156, 523
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	6 cut(s)	105, 164, 308, 349, 472, 776
NheI	GCTAGC	1 cut(s)	907
NlaIII	CATG	4 cut(s)	12, 21, 159, 984
NlaIV	GGNNCC	4 cut(s)	64, 234, 681, 704
NmeAIII	GCCGAG	1 cut(s)	521
NruI	TCGCGA	2 cut(s)	793, 951
NsiI	ATGCAT	2 cut(s)	14, 790
NspI	RCATGY	2 cut(s)	12, 21
OliI	CACNNNNGTG	1 cut(s)	446
PaeR7I	CTCGAG	3 cut(s)	316, 357, 646
PaqCI	CACCTGC	2 cut(s)	277, 761
PciSI	GCTCTTC	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PctI	GAATGC	1 cut(s)	976
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	4 cut(s)	321, 362, 579, 635
PflMI	CCANNNNNTGG	2 cut(s)	408, 752
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	4 cut(s)	308, 349, 650, 862
PpsI	GAGTC	4 cut(s)	308, 349, 650, 862
Psp124BI	GAGCTC	2 cut(s)	564, 930
Psp6I	CCWGG	2 cut(s)	427, 880
PspGI	CCWGG	2 cut(s)	427, 880
PspN4I	GGNNCC	4 cut(s)	64, 234, 681, 704
PspXI	VCTCGAGB	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	776
RruI	TCGCGA	2 cut(s)	793, 951
RsaI	GTAC	3 cut(s)	22, 73, 140
RsaNI	GTAC	3 cut(s)	21, 72, 139
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	2 cut(s)	564, 930
SapI	GCTCTTC	1 cut(s)	600
SaqAI	TTAA	3 cut(s)	477, 507, 1024
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	6 cut(s)	105, 164, 308, 349, 472, 776
SchI	GAGTC	4 cut(s)	308, 349, 650, 863
ScrFI	CCNGG	2 cut(s)	429, 882
SduI	GDGCHC	4 cut(s)	402, 438, 564, 930
SfaNI	GCATC	2 cut(s)	775, 797
Sfr274I	CTCGAG	3 cut(s)	316, 357, 646
SlaI	CTCGAG	3 cut(s)	316, 357, 646
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	4 cut(s)	256, 316, 357, 646
SmoI	CTYRAG	4 cut(s)	256, 316, 357, 646
Sse9I	AATT	3 cut(s)	125, 483, 541
SsiI	CCGC	3 cut(s)	339, 550, 732
SspMI	CTAG	5 cut(s)	663, 810, 843, 908, 921
SstI	GAGCTC	2 cut(s)	564, 930
StyD4I	CCNGG	2 cut(s)	427, 880
StyI	CCWWGG	2 cut(s)	402, 608
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	6 cut(s)	317, 328, 358, 423, 647, 901
TasI	AATT	3 cut(s)	125, 483, 541
TatI	WGTACW	1 cut(s)	71
TfiI	GAWTC	4 cut(s)	321, 362, 579, 635
Tru1I	TTAA	3 cut(s)	477, 507, 1024
Tru9I	TTAA	3 cut(s)	477, 507, 1024
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	831, 891
TspGWI	ACGGA	2 cut(s)	57, 814
Van91I	CCANNNNNTGG	2 cut(s)	408, 752
VneI	GTGCAC	1 cut(s)	434
XapI	RAATTY	2 cut(s)	125, 483
XbaI	TCTAGA	1 cut(s)	809
XceI	RCATGY	2 cut(s)	12, 21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XhoI	CTCGAG	3 cut(s)	316, 357, 646
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	5 cut(s)	663, 810, 843, 908, 921
Zsp2I	ATGCAT	2 cut(s)	14, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.