Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Gal_mutarotas_2 | PF13802 | 152 - 226 | 6.6e-16 | Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain |
| Glyco_hydro_31_2nd | PF01055 | 267 - 596 | 2.7e-126 | Glycosyl hydrolases family 31 TIM-barrel domain |
| DUF5110 | PF17137 | 698 - 766 | 3.9e-13 | Domain of unknown function (DUF5110) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1563, 2274 |
| Acc65I | GGTACC | 2 cut(s) | 476, 2636 |
| AccB1I | GGYRCC | 3 cut(s) | 476, 2309, 2636 |
| AccBSI | CCGCTC | 3 cut(s) | 113, 520, 2649 |
| AccIII | TCCGGA | 1 cut(s) | 2799 |
| AciI | CCGC | 9 cut(s) | 111, 507, 520, 1474, 1689, 1738, 1762, 1919, 2647 |
| AclWI | GGATC | 7 cut(s) | 977, 1011, 1838, 2263, 2780, 2810, 3195 |
| AcoI | YGGCCR | 1 cut(s) | 2928 |
| AcsI | RAATTY | 6 cut(s) | 53, 424, 547, 2168, 2238, 2989 |
| AcuI | CTGAAG | 5 cut(s) | 249, 2151, 2271, 2349, 2562 |
| AcvI | CACGTG | 1 cut(s) | 782 |
| AcyI | GRCGYC | 1 cut(s) | 2492 |
| AfeI | AGCGCT | 1 cut(s) | 772 |
| AflII | CTTAAG | 1 cut(s) | 1861 |
| AhlI | ACTAGT | 1 cut(s) | 31 |
| AjnI | CCWGG | 5 cut(s) | 154, 1045, 1150, 2172, 2537 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 64, 96, 112, 144, 423, 455 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 290, 322 |
| Alw21I | GWGCWC | 3 cut(s) | 21, 1623, 1952 |
| Alw26I | GTCTC | 6 cut(s) | 359, 377, 1491, 1868, 2260, 2383 |
| Alw44I | GTGCAC | 1 cut(s) | 1948 |
| AlwI | GGATC | 7 cut(s) | 977, 1011, 1838, 2263, 2780, 2810, 3195 |
| Ama87I | CYCGRG | 1 cut(s) | 2693 |
| Aor13HI | TCCGGA | 1 cut(s) | 2799 |
| Aor51HI | AGCGCT | 1 cut(s) | 772 |
| AoxI | GGCC | 6 cut(s) | 1148, 1154, 1580, 2928, 2957, 3134 |
| ApaI | GGGCCC | 1 cut(s) | 2961 |
| ApaLI | GTGCAC | 1 cut(s) | 1948 |
| ApeKI | GCWGC | 5 cut(s) | 341, 445, 1341, 1481, 2383 |
| ApoI | RAATTY | 6 cut(s) | 53, 424, 547, 2168, 2238, 2989 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1867, 1899 |
| AseI | ATTAAT | 1 cut(s) | 2613 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 435, 2557 |
| Asp718I | GGTACC | 2 cut(s) | 476, 2636 |
| AspLEI | GCGC | 2 cut(s) | 773, 1758 |
| AsuC2I | CCSGG | 1 cut(s) | 2704 |
| AsuII | TTCGAA | 1 cut(s) | 1112 |
| AsuNHI | GCTAGC | 1 cut(s) | 610 |
| AvaI | CYCGRG | 1 cut(s) | 2693 |
| AvaII | GGWCC | 8 cut(s) | 740, 816, 970, 1203, 1491, 1892, 2048, 3123 |
| BaeGI | GKGCMC | 4 cut(s) | 1674, 1952, 2538, 2961 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1803, 1836 |
| BanI | GGYRCC | 3 cut(s) | 476, 2309, 2636 |
| BanII | GRGCYC | 2 cut(s) | 1623, 2961 |
| BauI | CACGAG | 1 cut(s) | 1447 |
| BbrPI | CACGTG | 1 cut(s) | 782 |
| BbsI | GAAGAC | 1 cut(s) | 428 |
| Bbv12I | GWGCWC | 3 cut(s) | 21, 1623, 1952 |
| BbvCI | CCTCAGC | 1 cut(s) | 137 |
| BbvI | GCAGC | 5 cut(s) | 353, 457, 1328, 1468, 2395 |
| BceAI | ACGGC | 5 cut(s) | 394, 505, 1650, 1687, 2943 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 115, 149 |
| BciT130I | CCWGG | 5 cut(s) | 156, 1047, 1152, 2174, 2539 |
| BcnI | CCSGG | 1 cut(s) | 2704 |
| BcoDI | GTCTC | 6 cut(s) | 359, 377, 1491, 1868, 2260, 2383 |
| BcuI | ACTAGT | 1 cut(s) | 31 |
| BfaI | CTAG | 5 cut(s) | 32, 351, 611, 1901, 2811 |
| BfmI | CTRYAG | 1 cut(s) | 252 |
| BfoI | RGCGCY | 2 cut(s) | 774, 1759 |
| BfrI | CTTAAG | 1 cut(s) | 1861 |
| BisI | GCNGC | 7 cut(s) | 111, 342, 446, 1342, 1482, 1738, 2384 |
| BlsI | GCNGC | 7 cut(s) | 112, 343, 447, 1343, 1483, 1739, 2385 |
| Bme1390I | CCNGG | 6 cut(s) | 156, 1047, 1152, 2174, 2539, 2704 |
| Bme18I | GGWCC | 8 cut(s) | 740, 816, 970, 1203, 1491, 1892, 2048, 3123 |
| BmeT110I | CYCGRG | 1 cut(s) | 2693 |
| BmiI | GGNNCC | 7 cut(s) | 478, 1581, 1893, 2049, 2311, 2638, 2959 |
| BmrFI | CCNGG | 6 cut(s) | 156, 1047, 1152, 2174, 2539, 2704 |
| BmrI | ACTGGG | 3 cut(s) | 504, 1343, 3100 |
| BmsI | GCATC | 5 cut(s) | 53, 396, 544, 1026, 3003 |
| BmtI | GCTAGC | 1 cut(s) | 614 |
| BmuI | ACTGGG | 3 cut(s) | 504, 1343, 3100 |
| BoxI | GACNNNNGTC | 1 cut(s) | 245 |
| BpiI | GAAGAC | 1 cut(s) | 428 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2633, 2665 |
| BpmI | CTGGAG | 4 cut(s) | 648, 862, 1800, 1892 |
| Bpu10I | CCTNAGC | 2 cut(s) | 137, 1617 |
| Bpu14I | TTCGAA | 1 cut(s) | 1112 |
| BpuEI | CTTGAG | 3 cut(s) | 482, 536, 2890 |
| BpuMI | CCSGG | 1 cut(s) | 2704 |
| Bsa29I | ATCGAT | 1 cut(s) | 692 |
| BsaAI | YACGTR | 1 cut(s) | 782 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1995 |
| BsaHI | GRCGYC | 1 cut(s) | 2492 |
| BsaI | GGTCTC | 2 cut(s) | 2260, 2383 |
| BsaWI | WCCGGW | 2 cut(s) | 1493, 2799 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1798, 1828, 3107, 3137 |
| Bse3DI | GCAATG | 1 cut(s) | 1952 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1995 |
| BseAI | TCCGGA | 1 cut(s) | 2799 |
| BseBI | CCWGG | 5 cut(s) | 156, 1047, 1152, 2174, 2539 |
| BseCI | ATCGAT | 1 cut(s) | 692 |
| BseJI | GATNNNNATC | 1 cut(s) | 1995 |
| BseMI | GCAATG | 1 cut(s) | 1952 |
| BseMII | CTCAG | 5 cut(s) | 128, 176, 1293, 1608, 2919 |
| BseRI | GAGGAG | 4 cut(s) | 1765, 2043, 2723, 3143 |
| BseSI | GKGCMC | 4 cut(s) | 1674, 1952, 2538, 2961 |
| BseXI | GCAGC | 5 cut(s) | 353, 457, 1328, 1468, 2395 |
| BsgI | GTGCAG | 1 cut(s) | 2448 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1196 |
| BshFI | GGCC | 6 cut(s) | 1150, 1156, 1582, 2930, 2959, 3136 |
| BshNI | GGYRCC | 3 cut(s) | 476, 2309, 2636 |
| BshVI | ATCGAT | 1 cut(s) | 692 |
| BsiEI | CGRYCG | 1 cut(s) | 1196 |
| BsiHKAI | GWGCWC | 3 cut(s) | 21, 1623, 1952 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2693 |
| BsiSI | CCGG | 3 cut(s) | 1494, 2703, 2800 |
| BslFI | GGGAC | 3 cut(s) | 253, 1569, 2596 |
| BsmAI | GTCTC | 6 cut(s) | 359, 377, 1491, 1868, 2260, 2383 |
| BsmFI | GGGAC | 3 cut(s) | 253, 1569, 2596 |
| BsnI | GGCC | 6 cut(s) | 1150, 1156, 1582, 2930, 2959, 3136 |
| Bso31I | GGTCTC | 2 cut(s) | 2260, 2383 |
| BsoBI | CYCGRG | 1 cut(s) | 2693 |
| Bsp119I | TTCGAA | 1 cut(s) | 1112 |
| Bsp120I | GGGCCC | 1 cut(s) | 2957 |
| Bsp1286I | GDGCHC | 6 cut(s) | 21, 1623, 1674, 1952, 2538, 2961 |
| Bsp13I | TCCGGA | 1 cut(s) | 2799 |
| Bsp143I | GATC | 9 cut(s) | 982, 1003, 1193, 1391, 1843, 2255, 2785, 2802, 3187 |
| Bsp19I | CCATGG | 2 cut(s) | 1539, 2313 |
| BspACI | CCGC | 9 cut(s) | 111, 507, 520, 1474, 1689, 1738, 1762, 1919, 2647 |
| BspANI | GGCC | 6 cut(s) | 1150, 1156, 1582, 2930, 2959, 3136 |
| BspCNI | CTCAG | 5 cut(s) | 129, 175, 1294, 1609, 2918 |
| BspDI | ATCGAT | 1 cut(s) | 692 |
| BspEI | TCCGGA | 1 cut(s) | 2799 |
| BspLI | GGNNCC | 7 cut(s) | 478, 1581, 1893, 2049, 2311, 2638, 2959 |
| BspMAI | CTGCAG | 1 cut(s) | 256 |
| BspOI | GCTAGC | 1 cut(s) | 614 |
| BspPI | GGATC | 7 cut(s) | 977, 1011, 1838, 2263, 2780, 2810, 3195 |
| BspT104I | TTCGAA | 1 cut(s) | 1112 |
| BspT107I | GGYRCC | 3 cut(s) | 476, 2309, 2636 |
| BspTI | CTTAAG | 1 cut(s) | 1861 |
| BspTNI | GGTCTC | 2 cut(s) | 2260, 2383 |
| BsrBI | CCGCTC | 3 cut(s) | 113, 520, 2649 |
| BsrDI | GCAATG | 1 cut(s) | 1952 |
| BssMI | GATC | 9 cut(s) | 982, 1003, 1193, 1391, 1843, 2255, 2785, 2802, 3187 |
| BssNI | GRCGYC | 1 cut(s) | 2492 |
| BssSI | CACGAG | 1 cut(s) | 1447 |
| BssT1I | CCWWGG | 7 cut(s) | 602, 819, 993, 1539, 2313, 2790, 3031 |
| Bst2BI | CACGAG | 1 cut(s) | 1447 |
| Bst2UI | CCWGG | 5 cut(s) | 156, 1047, 1152, 2174, 2539 |
| Bst6I | CTCTTC | 3 cut(s) | 1713, 1793, 2258 |
| BstACI | GRCGYC | 1 cut(s) | 2492 |
| BstAFI | CTTAAG | 1 cut(s) | 1861 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1916, 2296 |
| BstBAI | YACGTR | 1 cut(s) | 782 |
| BstBI | TTCGAA | 1 cut(s) | 1112 |
| BstC8I | GCNNGC | 7 cut(s) | 509, 612, 1472, 1912, 2282, 2700, 2824 |
| BstDEI | CTNAG | 8 cut(s) | 137, 162, 192, 1302, 1559, 1617, 2905, 3158 |
| BstDSI | CCRYGG | 4 cut(s) | 1539, 1666, 1703, 2313 |
| BstH2I | RGCGCY | 2 cut(s) | 774, 1759 |
| BstHHI | GCGC | 2 cut(s) | 773, 1758 |
| BstKTI | GATC | 9 cut(s) | 985, 1006, 1196, 1394, 1846, 2258, 2788, 2805, 3190 |
| BstMAI | GTCTC | 6 cut(s) | 359, 377, 1491, 1868, 2260, 2383 |
| BstMBI | GATC | 9 cut(s) | 982, 1003, 1193, 1391, 1843, 2255, 2785, 2802, 3187 |
| BstMCI | CGRYCG | 1 cut(s) | 1196 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 517, 1607, 1916, 2296 |
| BstNI | CCWGG | 5 cut(s) | 156, 1047, 1152, 2174, 2539 |
| BstNSI | RCATGY | 3 cut(s) | 2066, 2288, 2702 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 245 |
| BstSCI | CCNGG | 6 cut(s) | 154, 1045, 1150, 2172, 2537, 2702 |
| BstSFI | CTRYAG | 1 cut(s) | 252 |
| BstSLI | GKGCMC | 4 cut(s) | 1674, 1952, 2538, 2961 |
| BstV1I | GCAGC | 5 cut(s) | 353, 457, 1328, 1468, 2395 |
| BstV2I | GAAGAC | 1 cut(s) | 428 |
| BstX2I | RGATCY | 4 cut(s) | 982, 1003, 2255, 3187 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1016 |
| BstYI | RGATCY | 4 cut(s) | 982, 1003, 2255, 3187 |
| Bsu15I | ATCGAT | 1 cut(s) | 692 |
| BsuRI | GGCC | 6 cut(s) | 1150, 1156, 1582, 2930, 2959, 3136 |
| BsuTUI | ATCGAT | 1 cut(s) | 692 |
| BtgI | CCRYGG | 4 cut(s) | 1539, 1666, 1703, 2313 |
| BtgZI | GCGATG | 1 cut(s) | 691 |
| BtsI | GCAGTG | 4 cut(s) | 21, 249, 1914, 1952 |
| Cac8I | GCNNGC | 7 cut(s) | 509, 612, 1472, 1912, 2282, 2700, 2824 |
| CfoI | GCGC | 2 cut(s) | 773, 1758 |
| ClaI | ATCGAT | 1 cut(s) | 692 |
| CseI | GACGC | 1 cut(s) | 2500 |
| DdeI | CTNAG | 8 cut(s) | 137, 162, 192, 1302, 1559, 1617, 2905, 3158 |
| DpnI | GATC | 9 cut(s) | 984, 1005, 1195, 1393, 1845, 2257, 2787, 2804, 3189 |
| DpnII | GATC | 9 cut(s) | 982, 1003, 1193, 1391, 1843, 2255, 2785, 2802, 3187 |
| DraI | TTTAAA | 1 cut(s) | 2112 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1563, 2274 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1563, 2274 |
| EaeI | YGGCCR | 1 cut(s) | 2928 |
| Eam1104I | CTCTTC | 3 cut(s) | 1713, 1793, 2258 |
| EarI | CTCTTC | 3 cut(s) | 1713, 1793, 2258 |
| Ecl136II | GAGCTC | 1 cut(s) | 1621 |
| Eco130I | CCWWGG | 7 cut(s) | 602, 819, 993, 1539, 2313, 2790, 3031 |
| Eco147I | AGGCCT | 1 cut(s) | 3136 |
| Eco24I | GRGCYC | 2 cut(s) | 1623, 2961 |
| Eco31I | GGTCTC | 2 cut(s) | 2260, 2383 |
| Eco32I | GATATC | 1 cut(s) | 216 |
| Eco47I | GGWCC | 8 cut(s) | 740, 816, 970, 1203, 1491, 1892, 2048, 3123 |
| Eco47III | AGCGCT | 1 cut(s) | 772 |
| Eco53kI | GAGCTC | 1 cut(s) | 1621 |
| Eco57I | CTGAAG | 5 cut(s) | 249, 2151, 2271, 2349, 2562 |
| Eco72I | CACGTG | 1 cut(s) | 782 |
| Eco88I | CYCGRG | 1 cut(s) | 2693 |
| EcoICRI | GAGCTC | 1 cut(s) | 1621 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1580, 2048 |
| EcoRI | GAATTC | 2 cut(s) | 547, 2168 |
| EcoRII | CCWGG | 5 cut(s) | 154, 1045, 1150, 2172, 2537 |
| EcoRV | GATATC | 1 cut(s) | 216 |
| EcoT14I | CCWWGG | 7 cut(s) | 602, 819, 993, 1539, 2313, 2790, 3031 |
| EcoT22I | ATGCAT | 1 cut(s) | 559 |
| EcoT38I | GRGCYC | 2 cut(s) | 1623, 2961 |
| ErhI | CCWWGG | 7 cut(s) | 602, 819, 993, 1539, 2313, 2790, 3031 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 64, 96, 803, 835, 1381, 1413 |
| FaqI | GGGAC | 3 cut(s) | 253, 1569, 2596 |
| FauI | CCCGC | 1 cut(s) | 500 |
| FauNDI | CATATG | 1 cut(s) | 1527 |
| Fnu4HI | GCNGC | 7 cut(s) | 111, 342, 446, 1342, 1482, 1738, 2384 |
| FriOI | GRGCYC | 2 cut(s) | 1623, 2961 |
| Fsp4HI | GCNGC | 7 cut(s) | 111, 342, 446, 1342, 1482, 1738, 2384 |
| FspBI | CTAG | 5 cut(s) | 32, 351, 611, 1901, 2811 |
| GlaI | GCGC | 2 cut(s) | 772, 1757 |
| GluI | GCNGC | 7 cut(s) | 111, 342, 446, 1342, 1482, 1738, 2384 |
| GsuI | CTGGAG | 4 cut(s) | 648, 862, 1800, 1892 |
| HaeII | RGCGCY | 2 cut(s) | 774, 1759 |
| HaeIII | GGCC | 6 cut(s) | 1150, 1156, 1582, 2930, 2959, 3136 |
| HapII | CCGG | 3 cut(s) | 1494, 2703, 2800 |
| HgaI | GACGC | 1 cut(s) | 2500 |
| HhaI | GCGC | 2 cut(s) | 773, 1758 |
| Hin1I | GRCGYC | 1 cut(s) | 2492 |
| Hin6I | GCGC | 2 cut(s) | 771, 1756 |
| HinP1I | GCGC | 2 cut(s) | 771, 1756 |
| HincII | GTYRAC | 1 cut(s) | 2193 |
| HindII | GTYRAC | 1 cut(s) | 2193 |
| HpaII | CCGG | 3 cut(s) | 1494, 2703, 2800 |
| Hpy166II | GTNNAC | 5 cut(s) | 189, 1950, 2193, 2878, 2889 |
| Hpy8I | GTNNAC | 5 cut(s) | 189, 1950, 2193, 2878, 2889 |
| Hpy99I | CGWCG | 4 cut(s) | 66, 247, 1810, 2280 |
| HpyCH4IV | ACGT | 4 cut(s) | 433, 581, 781, 1432 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 517, 1607, 1916, 2296 |
| HpyF3I | CTNAG | 8 cut(s) | 137, 162, 192, 1302, 1559, 1617, 2905, 3158 |
| HpySE526I | ACGT | 4 cut(s) | 433, 581, 781, 1432 |
| Hsp92I | GRCGYC | 1 cut(s) | 2492 |
| HspAI | GCGC | 2 cut(s) | 771, 1756 |
| Kpn2I | TCCGGA | 1 cut(s) | 2799 |
| KpnI | GGTACC | 2 cut(s) | 480, 2640 |
| Kzo9I | GATC | 9 cut(s) | 982, 1003, 1193, 1391, 1843, 2255, 2785, 2802, 3187 |
| LmnI | GCTCC | 4 cut(s) | 715, 843, 2030, 3115 |
| Lsp1109I | GCAGC | 5 cut(s) | 353, 457, 1328, 1468, 2395 |
| LweI | GCATC | 5 cut(s) | 53, 396, 544, 1026, 3003 |
| MaeI | CTAG | 5 cut(s) | 32, 351, 611, 1901, 2811 |
| MaeII | ACGT | 4 cut(s) | 433, 581, 781, 1432 |
| MaeIII | GTNAC | 6 cut(s) | 199, 247, 259, 594, 874, 1285 |
| MalI | GATC | 9 cut(s) | 984, 1005, 1195, 1393, 1845, 2257, 2787, 2804, 3189 |
| MbiI | CCGCTC | 3 cut(s) | 113, 520, 2649 |
| MboI | GATC | 9 cut(s) | 982, 1003, 1193, 1391, 1843, 2255, 2785, 2802, 3187 |
| MfeI | CAATTG | 2 cut(s) | 786, 1550 |
| MflI | RGATCY | 4 cut(s) | 982, 1003, 2255, 3187 |
| MhlI | GDGCHC | 6 cut(s) | 21, 1623, 1674, 1952, 2538, 2961 |
| MlyI | GAGTC | 4 cut(s) | 406, 845, 2560, 2801 |
| MmeI | TCCRAC | 3 cut(s) | 143, 2782, 3168 |
| Mph1103I | ATGCAT | 1 cut(s) | 559 |
| MroI | TCCGGA | 1 cut(s) | 2799 |
| MroXI | GAANNNNTTC | 2 cut(s) | 435, 2557 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1014, 2061, 2067, 2561, 3174 |
| MspA1I | CMGCKG | 4 cut(s) | 1271, 1474, 1691, 2386 |
| MspCI | CTTAAG | 1 cut(s) | 1861 |
| MspI | CCGG | 3 cut(s) | 1494, 2703, 2800 |
| MspR9I | CCNGG | 6 cut(s) | 156, 1047, 1152, 2174, 2539, 2704 |
| MunI | CAATTG | 2 cut(s) | 786, 1550 |
| MvaI | CCWGG | 5 cut(s) | 156, 1047, 1152, 2174, 2539 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 517, 1607, 1916, 2296 |
| NciI | CCSGG | 1 cut(s) | 2704 |
| NcoI | CCATGG | 2 cut(s) | 1539, 2313 |
| NdeI | CATATG | 1 cut(s) | 1527 |
| NdeII | GATC | 9 cut(s) | 982, 1003, 1193, 1391, 1843, 2255, 2785, 2802, 3187 |
| NheI | GCTAGC | 1 cut(s) | 610 |
| NlaIV | GGNNCC | 7 cut(s) | 478, 1581, 1893, 2049, 2311, 2638, 2959 |
| NmuCI | GTSAC | 4 cut(s) | 247, 259, 594, 1285 |
| NsiI | ATGCAT | 1 cut(s) | 559 |
| NspI | RCATGY | 3 cut(s) | 2066, 2288, 2702 |
| NspV | TTCGAA | 1 cut(s) | 1112 |
| PaeI | GCATGC | 1 cut(s) | 2702 |
| PaeR7I | CTCGAG | 1 cut(s) | 2693 |
| PasI | CCCWGGG | 1 cut(s) | 1046 |
| PceI | AGGCCT | 1 cut(s) | 3136 |
| PdmI | GAANNNNTTC | 2 cut(s) | 435, 2557 |
| PfoI | TCCNGGA | 1 cut(s) | 2172 |
| PkrI | GCNGC | 7 cut(s) | 112, 343, 447, 1343, 1483, 1739, 2385 |
| Ple19I | CGATCG | 1 cut(s) | 1196 |
| PleI | GAGTC | 4 cut(s) | 405, 845, 2560, 2801 |
| PmaCI | CACGTG | 1 cut(s) | 782 |
| PmlI | CACGTG | 1 cut(s) | 782 |
| PpsI | GAGTC | 4 cut(s) | 405, 845, 2560, 2801 |
| Ppu21I | YACGTR | 1 cut(s) | 782 |
| PpuMI | RGGWCCY | 1 cut(s) | 2048 |
| PshAI | GACNNNNGTC | 1 cut(s) | 245 |
| PshBI | ATTAAT | 1 cut(s) | 2613 |
| Psp124BI | GAGCTC | 1 cut(s) | 1623 |
| Psp5II | RGGWCCY | 1 cut(s) | 2048 |
| Psp6I | CCWGG | 5 cut(s) | 154, 1045, 1150, 2172, 2537 |
| PspCI | CACGTG | 1 cut(s) | 782 |
| PspGI | CCWGG | 5 cut(s) | 154, 1045, 1150, 2172, 2537 |
| PspN4I | GGNNCC | 7 cut(s) | 478, 1581, 1893, 2049, 2311, 2638, 2959 |
| PspOMI | GGGCCC | 1 cut(s) | 2957 |
| PspPPI | RGGWCCY | 1 cut(s) | 2048 |
| PstI | CTGCAG | 1 cut(s) | 256 |
| PsuI | RGATCY | 4 cut(s) | 982, 1003, 2255, 3187 |
| PvuI | CGATCG | 1 cut(s) | 1196 |
| PvuII | CAGCTG | 2 cut(s) | 1271, 2386 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1014, 2061, 2067, 2561, 3174 |
| SacI | GAGCTC | 1 cut(s) | 1623 |
| SatI | GCNGC | 7 cut(s) | 111, 342, 446, 1342, 1482, 1738, 2384 |
| Sau3AI | GATC | 9 cut(s) | 982, 1003, 1193, 1391, 1843, 2255, 2785, 2802, 3187 |
| SchI | GAGTC | 4 cut(s) | 406, 845, 2560, 2801 |
| ScrFI | CCNGG | 6 cut(s) | 156, 1047, 1152, 2174, 2539, 2704 |
| SduI | GDGCHC | 6 cut(s) | 21, 1623, 1674, 1952, 2538, 2961 |
| SfaNI | GCATC | 5 cut(s) | 53, 396, 544, 1026, 3003 |
| SfcI | CTRYAG | 1 cut(s) | 252 |
| Sfr274I | CTCGAG | 1 cut(s) | 2693 |
| SfuI | TTCGAA | 1 cut(s) | 1112 |
| SinI | GGWCC | 8 cut(s) | 740, 816, 970, 1203, 1491, 1892, 2048, 3123 |
| SlaI | CTCGAG | 1 cut(s) | 2693 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1014, 2061, 2067, 2561, 3174 |
| SmlI | CTYRAG | 5 cut(s) | 461, 515, 1861, 2693, 2869 |
| SmoI | CTYRAG | 5 cut(s) | 461, 515, 1861, 2693, 2869 |
| SpeI | ACTAGT | 1 cut(s) | 31 |
| SphI | GCATGC | 1 cut(s) | 2702 |
| SseBI | AGGCCT | 1 cut(s) | 3136 |
| SsiI | CCGC | 9 cut(s) | 111, 507, 520, 1474, 1689, 1738, 1762, 1919, 2647 |
| SspMI | CTAG | 5 cut(s) | 32, 351, 611, 1901, 2811 |
| SstI | GAGCTC | 1 cut(s) | 1623 |
| StuI | AGGCCT | 1 cut(s) | 3136 |
| StyD4I | CCNGG | 6 cut(s) | 154, 1045, 1150, 2172, 2537, 2702 |
| StyI | CCWWGG | 7 cut(s) | 602, 819, 993, 1539, 2313, 2790, 3031 |
| TaiI | ACGT | 4 cut(s) | 436, 584, 784, 1435 |
| TaqI | TCGA | 7 cut(s) | 282, 692, 1112, 1192, 2551, 2694, 2805 |
| TatI | WGTACW | 3 cut(s) | 188, 2409, 2875 |
| TauI | GCSGC | 2 cut(s) | 113, 1740 |
| TseFI | GTSAC | 4 cut(s) | 247, 259, 594, 1285 |
| TseI | GCWGC | 5 cut(s) | 341, 445, 1341, 1481, 2383 |
| Tsp45I | GTSAC | 4 cut(s) | 247, 259, 594, 1285 |
| Vha464I | CTTAAG | 1 cut(s) | 1861 |
| VneI | GTGCAC | 1 cut(s) | 1948 |
| VpaK11BI | GGWCC | 8 cut(s) | 740, 816, 970, 1203, 1491, 1892, 2048, 3123 |
| VspI | ATTAAT | 1 cut(s) | 2613 |
| XapI | RAATTY | 6 cut(s) | 53, 424, 547, 2168, 2238, 2989 |
| XceI | RCATGY | 3 cut(s) | 2066, 2288, 2702 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1370, 3095 |
| XhoI | CTCGAG | 1 cut(s) | 2693 |
| XmnI | GAANNNNTTC | 2 cut(s) | 435, 2557 |
| XspI | CTAG | 5 cut(s) | 32, 351, 611, 1901, 2811 |
| Zsp2I | ATGCAT | 1 cut(s) | 559 |