Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001049

Physical Location & Seq

Genomic Coordinates Forward (+)

31248353 .. 31249935

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0311800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCTGTCCCATATAATGTGTGCTGCTCACCTCCTTGGTCCCATTCCCCAACCAACTGCTGTCGAGCAAAAGGAATTGCAGATTCAACATCGTCGAGGATGGTGTCCGTTGAGGATAAGGCATCTGACGGATTCAACGGCGCTGGAGAATTGGGCGAGGATGATAAATGTCCTCTTCGGAGATGGTGTCCTGCATGCGGTCAGATCCGGCGAGTTGTAAGGGGACCTAAGGCAGAAGAATGCCCGGATATGGGAGGTGAAAAACCTACCAAATCAATACCAGACGAGAGTCCTAGATGCCCACTTTGTGAAGGAAACACAACAATGATGCACGATTGGGTTCATGAGATACTAAGCGAAAGGCCTTACTGGAGGTGTTGCAGGGGAAATGGGTTCCCTTATTGCATGGGTTATATATGGGTTGACGAGATGGCGGGGGAAGGCTCTGAGTGTGATGAAGAGGATGGGAGGACTACCAAACTGCAGGAGTATCCAAAACCAACAATGTTTGGTCCTAATTGCCAAGTATGCGGTCGCATCATGTCTTCATTTATTTCACAATCTGCAACAAATCCCGGCAGGCCTTATTGGTTCTGCTATGGGTACCCGGCTCCTACAATCCACAAGCCGTCTTTCATATGGGTGGATGAATGCAAGATACATTTTGCTGGATTCGACGGCTACAGTGACTTTGAAGAACCAGAACATATACCTTCAGCCGGTGGGCTGTCAGACAGTGATCCTTCGTCGTTTGAGTTGTATTCCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

256

Amino Acids

28.5

Weight (kDa)

4.9

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001049)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0250991
rosa_rugosa	Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr6g0250991

rosa_rugosa

Rorug01G0009700 Rorug01G0012700 Rorug01G0053900 Rorug01G0068900 Rorug01G0087400 Rorug01G0087600 Rorug01G0093100 Rorug01G0098500 Rorug01G0140900.1 Rorug01G0147600.1 Rorug01G0148900.1 Rorug01G0186200 Rorug01G0245700 Rorug01G0262700 Rorug02G0006900 Rorug02G0154500 Rorug02G0186800 Rorug02G0203500 Rorug02G0219400 Rorug02G0252200 Rorug02G0351800 Rorug02G0525300 Rorug03G0349300 Rorug03G0353100 Rorug04G0333200 Rorug04G0379900 Rorug05G0212200 Rorug05G0217800 Rorug05G0223400 Rorug05G0287900 Rorug05G0342200 Rorug05G0373800 Rorug05G0386200 Rorug05G0396200 Rorug05G0398500 Rorug05G0398600 Rorug05G0398700 Rorug05G0398800 Rorug05G0451900 Rorug05G0485400 Rorug05G0541100 Rorug06G0124300 Rorug06G0371300 Rorug07G0094900 Rorug07G0098800 Rorug07G0098900 Rorug07G0172600 Rorug07G0253100 Rorug07G0253200 Rorug07G0267100 Rorug07G0268100 Rorug07G0270500 Rorug07G0271400 Rorug07G0311400 Rorug07G0311500 Rorug07G0311600 Rorug07G0311700 Rorug07G0311800 Rorug07G0337900 Rorug07G0342000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	603
AciI	CCGC	3 cut(s)	198, 434, 531
AclWI	GGATC	2 cut(s)	199, 734
AcuI	CTGAAG	1 cut(s)	699
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	4 cut(s)	197, 250, 251, 719
AgsI	TTSAA	3 cut(s)	87, 136, 695
AlwI	GGATC	2 cut(s)	199, 734
AoxI	GGCC	2 cut(s)	362, 581
ApeKI	GCWGC	1 cut(s)	24
Asp718I	GGTACC	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	3 cut(s)	39, 224, 512
AsuC2I	CCSGG	3 cut(s)	245, 576, 608
AsuHPI	GGTGA	2 cut(s)	21, 269
AvaII	GGWCC	3 cut(s)	39, 224, 512
AxyI	CCTNAGG	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	4 cut(s)	94, 177, 424, 458
BceAI	ACGGC	3 cut(s)	154, 613, 694
BciVI	GTATCC	1 cut(s)	501
BcnI	CCSGG	3 cut(s)	245, 576, 608
BfaI	CTAG	2 cut(s)	294, 769
BfmI	CTRYAG	2 cut(s)	482, 682
BfoI	RGCGCY	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	501
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	3 cut(s)	245, 576, 608
Bme18I	GGWCC	3 cut(s)	39, 224, 512
BmgT120I	GGNCC	3 cut(s)	39, 224, 512
BmiI	GGNNCC	5 cut(s)	41, 225, 395, 605, 612
BmrFI	CCNGG	3 cut(s)	245, 576, 608
BmsI	GCATC	4 cut(s)	131, 287, 318, 546
BoxI	GACNNNNGTC	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	537
BpmI	CTGGAG	2 cut(s)	165, 391
BpuMI	CCSGG	3 cut(s)	245, 576, 608
BsaJI	CCNNGG	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	4 cut(s)	197, 250, 251, 719
Bse118I	RCCGGY	1 cut(s)	719
Bse1I	ACTGG	1 cut(s)	374
Bse21I	CCTNAGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	4 cut(s)	105, 166, 469, 652
BseLI	CCNNNNNNNGG	4 cut(s)	197, 250, 251, 719
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	535
BshFI	GGCC	2 cut(s)	364, 583
BshNI	GGYRCC	1 cut(s)	603
BsiEI	CGRYCG	1 cut(s)	535
BsiSI	CCGG	5 cut(s)	208, 245, 576, 608, 720
BslFI	GGGAC	2 cut(s)	25, 237
BslI	CCNNNNNNNGG	4 cut(s)	197, 250, 251, 719
BsmFI	GGGAC	2 cut(s)	25, 237
BsmI	GAATGC	2 cut(s)	245, 656
BsnI	GGCC	2 cut(s)	364, 583
Bsp143I	GATC	2 cut(s)	204, 739
BspACI	CCGC	3 cut(s)	198, 434, 531
BspANI	GGCC	2 cut(s)	364, 583
BspCNI	CTCAG	1 cut(s)	439
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	5 cut(s)	41, 225, 395, 605, 612
BspMAI	CTGCAG	1 cut(s)	486
BspPI	GGATC	2 cut(s)	199, 734
BspT107I	GGYRCC	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	719
BsrI	ACTGG	1 cut(s)	374
BssAI	RCCGGY	1 cut(s)	719
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	2 cut(s)	204, 739
BssT1I	CCWWGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	686, 737
Bst6I	CTCTTC	2 cut(s)	180, 453
BstC8I	GCNNGC	2 cut(s)	196, 581
BstDEI	CTNAG	3 cut(s)	228, 353, 447
BstF5I	GGATG	4 cut(s)	105, 166, 469, 652
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	207, 742
BstMBI	GATC	2 cut(s)	204, 739
BstMCI	CGRYCG	1 cut(s)	535
BstMWI	GCNNNNNNNGC	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	198
BstPAI	GACNNNNGTC	1 cut(s)	288
BstSCI	CCNGG	3 cut(s)	243, 574, 606
BstSFI	CTRYAG	2 cut(s)	482, 682
BstV1I	GCAGC	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
Bsu36I	CCTNAGG	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	364, 583
BtsCI	GGATG	4 cut(s)	105, 166, 469, 652
BtsIMutI	CAGTG	2 cut(s)	691, 742
Cac8I	GCNNGC	2 cut(s)	196, 581
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	719
Cfr13I	GGNCC	3 cut(s)	39, 224, 512
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	4 cut(s)	195, 344, 406, 541
CviJI	RGCY	8 cut(s)	364, 444, 583, 611, 628, 681, 719, 727
CviKI_1	RGCY	8 cut(s)	364, 444, 583, 611, 628, 681, 719, 727
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	3 cut(s)	228, 353, 447
DpnI	GATC	2 cut(s)	206, 741
DpnII	GATC	2 cut(s)	204, 739
DraIII	CACNNNGTG	1 cut(s)	308
Eam1104I	CTCTTC	2 cut(s)	180, 453
EarI	CTCTTC	2 cut(s)	180, 453
Eco130I	CCWWGG	1 cut(s)	35
Eco147I	AGGCCT	2 cut(s)	364, 583
Eco47I	GGWCC	3 cut(s)	39, 224, 512
Eco57I	CTGAAG	1 cut(s)	699
Eco81I	CCTNAGG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	4 cut(s)	198, 347, 409, 544
FaqI	GGGAC	2 cut(s)	25, 237
FatI	CATG	4 cut(s)	194, 343, 405, 540
FauI	CCCGC	1 cut(s)	427
FauNDI	CATATG	1 cut(s)	638
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	4 cut(s)	112, 173, 476, 659
Fsp4HI	GCNGC	1 cut(s)	25
FspBI	CTAG	2 cut(s)	294, 769
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	25
GsuI	CTGGAG	2 cut(s)	165, 391
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	364, 583
HapII	CCGG	5 cut(s)	208, 245, 576, 608, 720
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	4 cut(s)	198, 347, 409, 544
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	4 cut(s)	83, 132, 289, 672
HpaII	CCGG	5 cut(s)	208, 245, 576, 608, 720
HphI	GGTGA	2 cut(s)	21, 269
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	5 cut(s)	127, 180, 204, 448, 733
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	1 cut(s)	424
Hpy99I	CGWCG	3 cut(s)	97, 680, 751
HpyAV	CCTTC	4 cut(s)	305, 434, 723, 753
HpyCH4III	ACNGT	2 cut(s)	686, 737
HpyCH4V	TGCA	8 cut(s)	80, 194, 331, 381, 405, 484, 566, 654
HpyF10VI	GCNNNNNNNGC	1 cut(s)	528
HpyF3I	CTNAG	3 cut(s)	228, 353, 447
Hsp92II	CATG	4 cut(s)	198, 347, 409, 544
HspAI	GCGC	1 cut(s)	141
KpnI	GGTACC	1 cut(s)	607
Kzo9I	GATC	2 cut(s)	204, 739
LmnI	GCTCC	1 cut(s)	616
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	4 cut(s)	131, 287, 318, 546
MaeI	CTAG	2 cut(s)	294, 769
MaeIII	GTNAC	1 cut(s)	686
MalI	GATC	2 cut(s)	206, 741
MboI	GATC	2 cut(s)	204, 739
MboII	GAAGA	5 cut(s)	167, 248, 470, 537, 707
MflI	RGATCY	1 cut(s)	204
MluCI	AATT	3 cut(s)	75, 149, 517
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	9 cut(s)	42, 90, 106, 151, 183, 248, 366, 454, 462
MslI	CAYNNNNRTG	2 cut(s)	323, 641
MspI	CCGG	5 cut(s)	208, 245, 576, 608, 720
MspR9I	CCNGG	3 cut(s)	245, 576, 608
Mva1269I	GAATGC	2 cut(s)	245, 656
MwoI	GCNNNNNNNGC	1 cut(s)	528
NciI	CCSGG	3 cut(s)	245, 576, 608
NdeI	CATATG	1 cut(s)	638
NdeII	GATC	2 cut(s)	204, 739
NlaIII	CATG	4 cut(s)	198, 347, 409, 544
NlaIV	GGNNCC	5 cut(s)	41, 225, 395, 605, 612
NmuCI	GTSAC	1 cut(s)	686
NspI	RCATGY	1 cut(s)	198
PaeI	GCATGC	1 cut(s)	198
PagI	TCATGA	1 cut(s)	343
PceI	AGGCCT	2 cut(s)	364, 583
PctI	GAATGC	2 cut(s)	245, 656
PfeI	GAWTC	3 cut(s)	83, 132, 672
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PpuMI	RGGWCCY	1 cut(s)	224
PshAI	GACNNNNGTC	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	224
PspN4I	GGNNCC	5 cut(s)	41, 225, 395, 605, 612
PspPI	GGNCC	3 cut(s)	39, 224, 512
PspPPI	RGGWCCY	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	2 cut(s)	323, 641
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	2 cut(s)	204, 739
Sau96I	GGNCC	3 cut(s)	39, 224, 512
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	3 cut(s)	245, 576, 608
SetI	ASST	6 cut(s)	34, 229, 259, 268, 377, 715
SfaNI	GCATC	4 cut(s)	131, 287, 318, 546
SfcI	CTRYAG	2 cut(s)	482, 682
SinI	GGWCC	3 cut(s)	39, 224, 512
SmiMI	CAYNNNNRTG	2 cut(s)	323, 641
SphI	GCATGC	1 cut(s)	198
Sse9I	AATT	3 cut(s)	75, 149, 517
SseBI	AGGCCT	2 cut(s)	364, 583
SsiI	CCGC	3 cut(s)	198, 434, 531
SspMI	CTAG	2 cut(s)	294, 769
StuI	AGGCCT	2 cut(s)	364, 583
StyD4I	CCNGG	3 cut(s)	243, 574, 606
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	686, 737
TaqI	TCGA	3 cut(s)	64, 95, 675
TasI	AATT	3 cut(s)	75, 149, 517
TfiI	GAWTC	3 cut(s)	83, 132, 672
TscAI	CASTG	2 cut(s)	691, 742
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	5 cut(s)	332, 471, 537, 625, 663
TspGWI	ACGGA	2 cut(s)	97, 144
TspRI	CASTG	2 cut(s)	691, 742
VpaK11BI	GGWCC	3 cut(s)	39, 224, 512
XceI	RCATGY	1 cut(s)	198
XspI	CTAG	2 cut(s)	294, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.