Rh4BG067200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017376
Physical Location & Seq
Reverse (-)
12113705 .. 12119851
6147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG067200.1

Sequence Viewer

Length: 603 bp
ATGCCCCGGTTGTTGCAAGTTTGGGGATTGTTGAGGTTGGCCGCTTATTCATTATCTATCGTGGATGGCAAACGTGTGAGTAACTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTCTCTCACGCAGATTTATACACATGCGATTGCAATGGCAATGTCTGATTGGCCTTTTATTTATCCGTCAGTCACGCATAATGAGGGATGATTTGTGCGACCATGTTTGGGAGTTTCATTTCAACGAGGCCGCTCCTGAATACTGGCGAAGGCTTGATCCTTATTGGAACGGCGCTGGCTCCCTTATGCGCCGCTACTTTCATCCTGATGGGAGCCAAACTCCAGATCATGGTGATCAAGTATGGGGCGGCCATGAGTGCTGTTATTGCACCATTACAAGTCTTCTTGAAAATGGAAAAATAAGGGAACACTATGTAAGGATAAACAGATGGCCACGAATGTTTGTGTCCAGAAAGCAGGATTGGAGCTGGGAAATGTCCAGTCACCTCTTTTGCTACTCGAGCATCCCCGACTCTGATAAAGCAAGCGGGACTGGACCGCTTTTTCCAGTTAGTTCAATAAAGCTTGATTATAAAGAGAGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

200

Amino Acids

23.48

Weight (kDa)

8.7

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017376)

Species Orthologous Gene IDs
malus_domestica MD13G1227700.v1.1 MD13G1227800.v1.1
rosa_chinensis RchiOBHm_Chr4g0396531
rosa_laevigata RLG00000009527
rosa_multiflora Rmu_sc0001781.1_g000010
rosa_rugosa Rorug03G0349300 Rorug03G0349300 Rorug03G0349300
rosa_samantha Rh4AG069400 Rh4BG067200 Rh4CG075000 Rh4DG064400
rosa_wichuraiana Rw4G005580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
AccB7I CCANNNNNTGG 1 cut(s) 344
AccBSI CCGCTC 1 cut(s) 248
AciI CCGC 6 cut(s) 42, 246, 307, 363, 543, 554
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 3 cut(s) 39, 364, 446
AfiI CCNNNNNNNGG 2 cut(s) 223, 344
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 3 cut(s) 238, 404, 573
AjuI GAANNNNNNNTTGG 2 cut(s) 460, 492
AluBI AGCT 2 cut(s) 483, 580
AluI AGCT 2 cut(s) 483, 580
Alw26I GTCTC 3 cut(s) 98, 106, 114
AlwI GGATC 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 514
AoxI GGCC 5 cut(s) 39, 166, 243, 364, 446
AspLEI GCGC 2 cut(s) 290, 306
AspS9I GGNCC 1 cut(s) 551
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 359, 491
AvaI CYCGRG 1 cut(s) 514
AvaII GGWCC 1 cut(s) 551
BalI TGGCCA 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 389
BccI CCATC 3 cut(s) 59, 317, 438
BceAI ACGGC 1 cut(s) 301
BclI TGATCA 1 cut(s) 349
BcnI CCSGG 1 cut(s) 7
BcoDI GTCTC 3 cut(s) 98, 106, 114
BfoI RGCGCY 1 cut(s) 291
BisI GCNGC 4 cut(s) 42, 246, 307, 364
BlsI GCNGC 4 cut(s) 43, 247, 308, 365
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 551
BmeT110I CYCGRG 1 cut(s) 514
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 2 cut(s) 295, 329
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 1 cut(s) 528
BpiI GAAGAC 1 cut(s) 389
BplI GAGNNNNNCTC 4 cut(s) 70, 102, 319, 351
BpmI CTGGAG 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 344
Bse1I ACTGG 4 cut(s) 263, 495, 553, 563
Bse3DI GCAATG 2 cut(s) 155, 161
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 4 cut(s) 70, 208, 316, 519
BseLI CCNNNNNNNGG 2 cut(s) 223, 344
BseMI GCAATG 2 cut(s) 155, 161
BseNI ACTGG 4 cut(s) 263, 495, 553, 563
BseYI CCCAGC 1 cut(s) 483
BshFI GGCC 5 cut(s) 41, 168, 245, 366, 448
BsiHKCI CYCGRG 1 cut(s) 514
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 2 cut(s) 223, 344
BsmAI GTCTC 3 cut(s) 98, 106, 114
BsmFI GGGAC 1 cut(s) 559
BsnI GGCC 5 cut(s) 41, 168, 245, 366, 448
BsoBI CYCGRG 1 cut(s) 514
Bsp143I GATC 3 cut(s) 271, 340, 349
BspACI CCGC 6 cut(s) 42, 246, 307, 363, 543, 554
BspANI GGCC 5 cut(s) 41, 168, 245, 366, 448
BspLI GGNNCC 2 cut(s) 295, 329
BspPI GGATC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 155, 161
BsrI ACTGG 4 cut(s) 263, 495, 553, 563
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 3 cut(s) 271, 340, 349
BstC8I GCNNGC 2 cut(s) 292, 541
BstF5I GGATG 4 cut(s) 70, 208, 316, 519
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 2 cut(s) 290, 306
BstKTI GATC 3 cut(s) 274, 343, 352
BstMAI GTCTC 3 cut(s) 98, 106, 114
BstMBI GATC 3 cut(s) 271, 340, 349
BstMWI GCNNNNNNNGC 3 cut(s) 372, 381, 516
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 5
BstV2I GAAGAC 1 cut(s) 389
BsuRI GGCC 5 cut(s) 41, 168, 245, 366, 448
BtsCI GGATG 4 cut(s) 70, 208, 316, 519
Cac8I GCNNGC 2 cut(s) 292, 541
CfoI GCGC 2 cut(s) 290, 306
Cfr13I GGNCC 1 cut(s) 551
CviAII CATG 4 cut(s) 139, 218, 344, 368
DpnI GATC 3 cut(s) 273, 342, 351
DpnII GATC 3 cut(s) 271, 340, 349
EaeI YGGCCR 3 cut(s) 39, 364, 446
Eco47I GGWCC 1 cut(s) 551
Eco88I CYCGRG 1 cut(s) 514
FaeI CATG 4 cut(s) 142, 221, 347, 371
FaqI GGGAC 1 cut(s) 559
FatI CATG 4 cut(s) 138, 217, 343, 367
FauI CCCGC 1 cut(s) 536
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 4 cut(s) 42, 246, 307, 364
FokI GGATG 4 cut(s) 77, 215, 303, 506
Fsp4HI GCNGC 4 cut(s) 42, 246, 307, 364
GlaI GCGC 2 cut(s) 289, 305
GluI GCNGC 4 cut(s) 42, 246, 307, 364
GsaI CCCAGC 1 cut(s) 487
GsuI CTGGAG 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 5 cut(s) 41, 168, 245, 366, 448
HapII CCGG 1 cut(s) 7
HhaI GCGC 2 cut(s) 290, 306
Hin1II CATG 4 cut(s) 142, 221, 347, 371
Hin6I GCGC 2 cut(s) 288, 304
HinP1I GCGC 2 cut(s) 288, 304
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 1 cut(s) 527
HpaII CCGG 1 cut(s) 7
HphI GGTGA 2 cut(s) 359, 491
Hpy188I TCNGA 2 cut(s) 162, 532
Hpy188III TCNNGA 5 cut(s) 251, 320, 338, 401, 465
HpyAV CCTTC 1 cut(s) 258
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 3 cut(s) 16, 148, 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 372, 381, 516
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 4 cut(s) 142, 221, 347, 371
HspAI GCGC 2 cut(s) 288, 304
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 3 cut(s) 271, 340, 349
LmnI GCTCC 4 cut(s) 253, 299, 327, 480
LweI GCATC 1 cut(s) 528
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 3 cut(s) 80, 186, 497
MalI GATC 3 cut(s) 273, 342, 351
MbiI CCGCTC 1 cut(s) 248
MboI GATC 3 cut(s) 271, 340, 349
MboII GAAGA 1 cut(s) 389
MlsI TGGCCA 1 cut(s) 448
MluNI TGGCCA 1 cut(s) 448
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 4 cut(s) 27, 192, 235, 512
Mox20I TGGCCA 1 cut(s) 448
MscI TGGCCA 1 cut(s) 448
MslI CAYNNNNRTG 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 448
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 372, 381, 516
NciI CCSGG 1 cut(s) 7
NdeII GATC 3 cut(s) 271, 340, 349
NlaIII CATG 4 cut(s) 142, 221, 347, 371
NlaIV GGNNCC 2 cut(s) 295, 329
NmuCI GTSAC 2 cut(s) 186, 497
NspI RCATGY 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 514
PflMI CCANNNNNTGG 1 cut(s) 344
PkrI GCNGC 4 cut(s) 43, 247, 308, 365
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PsiI TTATAA 1 cut(s) 588
PspFI CCCAGC 1 cut(s) 483
PspN4I GGNNCC 2 cut(s) 295, 329
PspPI GGNCC 1 cut(s) 551
PspXI VCTCGAGB 1 cut(s) 514
RseI CAYNNNNRTG 1 cut(s) 321
SatI GCNGC 4 cut(s) 42, 246, 307, 364
Sau3AI GATC 3 cut(s) 271, 340, 349
Sau96I GGNCC 1 cut(s) 551
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 7
SetI ASST 5 cut(s) 38, 76, 485, 504, 582
SfaNI GCATC 1 cut(s) 528
Sfr274I CTCGAG 1 cut(s) 514
SinI GGWCC 1 cut(s) 551
SlaI CTCGAG 1 cut(s) 514
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 514
SmoI CTYRAG 1 cut(s) 514
SsiI CCGC 6 cut(s) 42, 246, 307, 363, 543, 554
StyD4I CCNGG 1 cut(s) 5
TaiI ACGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 515
TauI GCSGC 4 cut(s) 44, 248, 309, 366
TseFI GTSAC 2 cut(s) 186, 497
Tsp45I GTSAC 2 cut(s) 186, 497
TspDTI ATGAA 3 cut(s) 39, 221, 305
TspGWI ACGGA 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 551
XceI RCATGY 1 cut(s) 142
XhoI CTCGAG 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.