Rh4DG064400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017376
Physical Location & Seq
Reverse (-)
9700533 .. 9718315
17783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG064400.1

Sequence Viewer

Length: 801 bp
ATGAAAACGATGAAGTACAAAAACATAAACAGAGAAAGAGACCCAGAAGAAGAAGCAGCTGAAACAGAAGGTACAGATGATGAAGTTATTGTTTCGAGGGACCCATTGGAGCTGTTCGGTTTGGACATAATGTTGAATATACTGAGCAACCTTGACGCACGCAGCGGAGTACTCTCCCTCCTTGTCTGCCATGCTTGGAACGGCGTTGCTTCCAGTGATCGCCTTTGGAGTTCCAAGTGTGAGGAGTTGTGGCTTGGGAAAGCACACATGCCCCGGTTGTTGCAAATTCGGGGATTGTCGAGGTTGGTCGCTTATTCACTATCTATCATGGATGGCAAACGTTCACGCATAATGAGGGATGATTTGTGCGACCATGTTTGGGAGTTTCATTTCAACGAGGCCGCTCCTGAATGCTGGCGAAGGCTTGATCCTTATTGGAACGGCACTGGCTCCCTTATGCGCCGCTACTTTCATCCTGATGGGAGCCAAACTGCAGATCATGGTGATGAAGTATGGGGCGGCCATGAGTGCTGTTATTGCATCGTTACTAGTCTTCTTGAAAATGGAAAAATAAGGGAACACTATATACCTGCAATTTGGAGGGTCTTCTTAACCAAGGGCGAGGAGCAAGAGAAGGCAAAGAAAGAGAGCTTGGAGATGCTGAGAGCCGTAGAAGATCACGCAGGGACAATGTGCTGGCCTATCTGTGAGACTTTGCAACAGATTCATCTACTGTGCTTTAACTTGTGTACCTCGTTTCCATTCTGGTATTTAGTAGTACTTTTCATTACATATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

266

Amino Acids

30.89

Weight (kDa)

5.4

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 42 - 80 4.7e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017376)

Species Orthologous Gene IDs
malus_domestica MD13G1227700.v1.1 MD13G1227800.v1.1
rosa_chinensis RchiOBHm_Chr4g0396531
rosa_laevigata RLG00000009527
rosa_multiflora Rmu_sc0001781.1_g000010
rosa_rugosa Rorug03G0349300 Rorug03G0349300 Rorug03G0349300
rosa_samantha Rh4AG069400 Rh4BG067200 Rh4CG075000 Rh4DG064400
rosa_wichuraiana Rw4G005580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 598
AccBSI CCGCTC 1 cut(s) 404
AciI CCGC 4 cut(s) 165, 402, 463, 519
AclI AACGTT 1 cut(s) 340
AclWI GGATC 1 cut(s) 422
AcoI YGGCCR 1 cut(s) 520
AcsI RAATTY 1 cut(s) 285
AfaI GTAC 5 cut(s) 17, 73, 171, 751, 780
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 3 cut(s) 136, 394, 560
AhlI ACTAGT 1 cut(s) 548
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AluBI AGCT 3 cut(s) 59, 112, 651
AluI AGCT 3 cut(s) 59, 112, 651
Alw26I GTCTC 2 cut(s) 33, 704
AlwI GGATC 1 cut(s) 422
AoxI GGCC 3 cut(s) 399, 520, 698
ApeKI GCWGC 2 cut(s) 56, 162
ApoI RAATTY 1 cut(s) 285
AspLEI GCGC 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 515
AvaII GGWCC 1 cut(s) 100
BaeI ACNNNNGTAYC 2 cut(s) 733, 766
BbsI GAAGAC 2 cut(s) 545, 598
BbvI GCAGC 2 cut(s) 68, 174
BccI CCATC 2 cut(s) 326, 473
BceAI ACGGC 3 cut(s) 217, 457, 653
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 33, 704
BcuI ACTAGT 1 cut(s) 548
BfaI CTAG 1 cut(s) 549
BfmI CTRYAG 1 cut(s) 492
BfuAI ACCTGC 1 cut(s) 598
BisI GCNGC 5 cut(s) 57, 163, 402, 463, 520
BlsI GCNGC 5 cut(s) 58, 164, 403, 464, 521
BmcAI AGTACT 2 cut(s) 171, 780
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 4 cut(s) 101, 102, 451, 485
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 2 cut(s) 549, 648
BpiI GAAGAC 2 cut(s) 545, 598
BpuMI CCSGG 1 cut(s) 274
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 272, 615
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 213, 451
BseDI CCNNGG 2 cut(s) 272, 615
BseGI GGATG 3 cut(s) 337, 364, 472
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 134, 653
BseNI ACTGG 2 cut(s) 213, 451
BseRI GAGGAG 2 cut(s) 257, 638
BseXI GCAGC 2 cut(s) 68, 174
BshFI GGCC 3 cut(s) 401, 522, 700
BsiSI CCGG 1 cut(s) 274
BslFI GGGAC 2 cut(s) 113, 700
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 2 cut(s) 33, 704
BsmFI GGGAC 2 cut(s) 113, 700
BsmI GAATGC 1 cut(s) 416
BsnI GGCC 3 cut(s) 401, 522, 700
Bso31I GGTCTC 1 cut(s) 33
Bsp143I GATC 4 cut(s) 217, 427, 496, 676
BspACI CCGC 4 cut(s) 165, 402, 463, 519
BspANI GGCC 3 cut(s) 401, 522, 700
BspCNI CTCAG 2 cut(s) 135, 654
BspLI GGNNCC 4 cut(s) 101, 102, 451, 485
BspMAI CTGCAG 1 cut(s) 496
BspMI ACCTGC 1 cut(s) 598
BspPI GGATC 1 cut(s) 422
BspTNI GGTCTC 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 404
BsrI ACTGG 2 cut(s) 213, 451
BssECI CCNNGG 2 cut(s) 272, 615
BssMI GATC 4 cut(s) 217, 427, 496, 676
BssT1I CCWWGG 1 cut(s) 615
Bst4CI ACNGT 1 cut(s) 735
BstC8I GCNNGC 3 cut(s) 160, 416, 698
BstDEI CTNAG 2 cut(s) 143, 662
BstF5I GGATG 3 cut(s) 337, 364, 472
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 4 cut(s) 220, 430, 499, 679
BstMAI GTCTC 2 cut(s) 33, 704
BstMBI GATC 4 cut(s) 217, 427, 496, 676
BstMWI GCNNNNNNNGC 2 cut(s) 528, 537
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 492
BstV1I GCAGC 2 cut(s) 68, 174
BstV2I GAAGAC 2 cut(s) 545, 598
BsuRI GGCC 3 cut(s) 401, 522, 700
BtsCI GGATG 3 cut(s) 337, 364, 472
BtsIMutI CAGTG 2 cut(s) 220, 444
BveI ACCTGC 1 cut(s) 598
Cac8I GCNNGC 3 cut(s) 160, 416, 698
CfoI GCGC 1 cut(s) 462
Cfr13I GGNCC 1 cut(s) 100
CseI GACGC 1 cut(s) 164
Csp6I GTAC 5 cut(s) 16, 72, 170, 750, 779
CviAII CATG 6 cut(s) 191, 268, 328, 374, 500, 524
CviQI GTAC 5 cut(s) 16, 72, 170, 750, 779
DdeI CTNAG 2 cut(s) 143, 662
DpnI GATC 4 cut(s) 219, 429, 498, 678
DpnII GATC 4 cut(s) 217, 427, 496, 676
EaeI YGGCCR 1 cut(s) 520
Eco130I CCWWGG 1 cut(s) 615
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 615
ErhI CCWWGG 1 cut(s) 615
FaeI CATG 6 cut(s) 194, 271, 331, 377, 503, 527
FaqI GGGAC 2 cut(s) 113, 700
FatI CATG 6 cut(s) 190, 267, 327, 373, 499, 523
Fnu4HI GCNGC 5 cut(s) 57, 163, 402, 463, 520
FokI GGATG 3 cut(s) 344, 371, 459
Fsp4HI GCNGC 5 cut(s) 57, 163, 402, 463, 520
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 461
GluI GCNGC 5 cut(s) 57, 163, 402, 463, 520
HaeIII GGCC 3 cut(s) 401, 522, 700
HapII CCGG 1 cut(s) 274
HgaI GACGC 1 cut(s) 164
HhaI GCGC 1 cut(s) 462
Hin1II CATG 6 cut(s) 194, 271, 331, 377, 503, 527
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HinfI GANTC 1 cut(s) 724
HpaII CCGG 1 cut(s) 274
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 2 cut(s) 344, 750
Hpy188III TCNNGA 3 cut(s) 407, 476, 557
Hpy8I GTNNAC 2 cut(s) 344, 750
HpyAV CCTTC 3 cut(s) 62, 414, 628
HpyCH4III ACNGT 1 cut(s) 735
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 5 cut(s) 283, 494, 540, 593, 718
HpyF10VI GCNNNNNNNGC 2 cut(s) 528, 537
HpyF3I CTNAG 2 cut(s) 143, 662
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 6 cut(s) 194, 271, 331, 377, 503, 527
HspAI GCGC 1 cut(s) 460
KflI GGGWCCC 1 cut(s) 100
Kzo9I GATC 4 cut(s) 217, 427, 496, 676
LmnI GCTCC 5 cut(s) 109, 409, 455, 483, 625
Lsp1109I GCAGC 2 cut(s) 68, 174
LweI GCATC 2 cut(s) 549, 648
MaeI CTAG 1 cut(s) 549
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 1 cut(s) 544
MalI GATC 4 cut(s) 219, 429, 498, 678
MbiI CCGCTC 1 cut(s) 404
MboI GATC 4 cut(s) 217, 427, 496, 676
MboII GAAGA 5 cut(s) 59, 62, 545, 598, 686
MluCI AATT 2 cut(s) 285, 594
MnlI CCTC 9 cut(s) 90, 188, 235, 294, 348, 391, 594, 616, 763
MseI TTAA 2 cut(s) 611, 741
MslI CAYNNNNRTG 2 cut(s) 477, 504
MspA1I CMGCKG 2 cut(s) 59, 165
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 274
Mva1269I GAATGC 1 cut(s) 416
MwoI GCNNNNNNNGC 2 cut(s) 528, 537
NciI CCSGG 1 cut(s) 274
NdeII GATC 4 cut(s) 217, 427, 496, 676
NlaIII CATG 6 cut(s) 194, 271, 331, 377, 503, 527
NlaIV GGNNCC 4 cut(s) 101, 102, 451, 485
NspI RCATGY 1 cut(s) 271
PctI GAATGC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 724
PkrI GCNGC 5 cut(s) 58, 164, 403, 464, 521
PpuMI RGGWCCY 1 cut(s) 100
Psp1406I AACGTT 1 cut(s) 340
Psp5II RGGWCCY 1 cut(s) 100
PspN4I GGNNCC 4 cut(s) 101, 102, 451, 485
PspPI GGNCC 1 cut(s) 100
PspPPI RGGWCCY 1 cut(s) 100
PsrI GAACNNNNNNTAC 2 cut(s) 570, 602
PstI CTGCAG 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 5 cut(s) 17, 73, 171, 751, 780
RsaNI GTAC 5 cut(s) 16, 72, 170, 750, 779
RseI CAYNNNNRTG 2 cut(s) 477, 504
SaqAI TTAA 2 cut(s) 611, 741
SatI GCNGC 5 cut(s) 57, 163, 402, 463, 520
Sau3AI GATC 4 cut(s) 217, 427, 496, 676
Sau96I GGNCC 1 cut(s) 100
ScaI AGTACT 2 cut(s) 171, 780
ScrFI CCNGG 1 cut(s) 274
SetI ASST 9 cut(s) 61, 73, 114, 153, 305, 343, 592, 653, 755
SfaNI GCATC 2 cut(s) 549, 648
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 2 cut(s) 477, 504
SpeI ACTAGT 1 cut(s) 548
Sse9I AATT 2 cut(s) 285, 594
SsiI CCGC 4 cut(s) 165, 402, 463, 519
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 615
TaaI ACNGT 1 cut(s) 735
TaiI ACGT 1 cut(s) 343
TaqI TCGA 2 cut(s) 95, 299
TasI AATT 2 cut(s) 285, 594
TatI WGTACW 3 cut(s) 15, 169, 778
TauI GCSGC 3 cut(s) 404, 465, 522
TfiI GAWTC 1 cut(s) 724
Tru1I TTAA 2 cut(s) 611, 741
Tru9I TTAA 2 cut(s) 611, 741
TscAI CASTG 2 cut(s) 220, 451
TseI GCWGC 2 cut(s) 56, 162
TspDTI ATGAA 8 cut(s) 17, 26, 96, 377, 461, 522, 716, 775
TspRI CASTG 2 cut(s) 220, 451
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 1 cut(s) 285
XceI RCATGY 1 cut(s) 271
XspI CTAG 1 cut(s) 549
ZrmI AGTACT 2 cut(s) 171, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.