RchiOBHm_Chr4g0396531

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017376
Physical Location & Seq
Reverse (-)
12658618 .. 12663383
4766 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36890

Sequence Viewer

Length: 534 bp
ATGAAAACGAAGAAGTACAAAAACATAAACAGAGAAAGAGACCCAGAAGAAGAAGAAGCAGCTGAAACAGAAGGTACAGATGATGAAATTATTGTTTTGAGGGACCCATTGGAGCTGTTTGGTTTGGACATAATGTTGAATATACTAAGCAACCTTGACGCACGCAGCGGAGTACTCTCCCTCCTTGTCTGCCATGCTTGGAACGGCGTTGCTTGCAGTGATCGCCTTTGGAGTTCCAAGTGTGAGGAGTTGTGGCTTGGGAAAGCACACATGCCCCGGTTGTTGCAAGTTTGGGGATTGTTGAGGTTGGCCGCTTATTCATTATCTATCGTGGATGGAAAACGTTCACGCATAATGAGGGATGATTTGTGCGACCATGTTTGGGAGTTTCATTTCAACGAGGCCGCTCCTGAATACTGGCGAAGGCTTGATCCTTATTGGAACGGCGCTGGCTCCCTTATGCGCTGCTACTTTCATCCTGATGGGAGCCAAACTGCAGATCATGGTGATCAAGTATGGGGCAGCCATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

177

Amino Acids

20.45

Weight (kDa)

5.13

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 43 - 81 3.5e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017376)

Species Orthologous Gene IDs
malus_domestica MD13G1227700.v1.1 MD13G1227800.v1.1
rosa_chinensis RchiOBHm_Chr4g0396531
rosa_laevigata RLG00000009527
rosa_multiflora Rmu_sc0001781.1_g000010
rosa_rugosa Rorug03G0349300 Rorug03G0349300 Rorug03G0349300
rosa_samantha Rh4AG069400 Rh4BG067200 Rh4CG075000 Rh4DG064400
rosa_wichuraiana Rw4G005580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 407
AciI CCGC 3 cut(s) 168, 312, 405
AclI AACGTT 1 cut(s) 343
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 1 cut(s) 309
AfaI GTAC 3 cut(s) 17, 76, 174
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 2 cut(s) 139, 397
AluBI AGCT 2 cut(s) 62, 115
AluI AGCT 2 cut(s) 62, 115
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 1 cut(s) 425
AoxI GGCC 2 cut(s) 309, 402
ApeKI GCWGC 4 cut(s) 59, 165, 465, 522
Asp700I GAANNNNTTC 1 cut(s) 343
AspLEI GCGC 2 cut(s) 449, 465
AspS9I GGNCC 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 518
AvaII GGWCC 1 cut(s) 103
BbvI GCAGC 3 cut(s) 71, 177, 452
BccI CCATC 2 cut(s) 329, 476
BceAI ACGGC 2 cut(s) 220, 460
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 450
BisI GCNGC 6 cut(s) 60, 166, 312, 405, 466, 523
BlsI GCNGC 6 cut(s) 61, 167, 313, 406, 467, 524
BmcAI AGTACT 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 4 cut(s) 104, 105, 454, 488
BmrFI CCNGG 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 422
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 3 cut(s) 340, 367, 475
BseLI CCNNNNNNNGG 1 cut(s) 382
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 3 cut(s) 71, 177, 452
BshFI GGCC 2 cut(s) 311, 404
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 2 cut(s) 311, 404
Bso31I GGTCTC 1 cut(s) 33
Bsp143I GATC 4 cut(s) 220, 430, 499, 508
BspACI CCGC 3 cut(s) 168, 312, 405
BspANI GGCC 2 cut(s) 311, 404
BspLI GGNNCC 4 cut(s) 104, 105, 454, 488
BspMAI CTGCAG 1 cut(s) 499
BspPI GGATC 1 cut(s) 425
BspTNI GGTCTC 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 407
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 4 cut(s) 220, 430, 499, 508
BstC8I GCNNGC 3 cut(s) 163, 214, 451
BstDEI CTNAG 1 cut(s) 146
BstF5I GGATG 3 cut(s) 340, 367, 475
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 2 cut(s) 449, 465
BstKTI GATC 4 cut(s) 223, 433, 502, 511
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 4 cut(s) 220, 430, 499, 508
BstMWI GCNNNNNNNGC 2 cut(s) 213, 222
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 275
BstSFI CTRYAG 1 cut(s) 495
BstV1I GCAGC 3 cut(s) 71, 177, 452
BsuRI GGCC 2 cut(s) 311, 404
BtsCI GGATG 3 cut(s) 340, 367, 475
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 3 cut(s) 163, 214, 451
CfoI GCGC 2 cut(s) 449, 465
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 1 cut(s) 167
Csp6I GTAC 3 cut(s) 16, 75, 173
CviAII CATG 5 cut(s) 194, 271, 377, 503, 527
CviJI RGCY 9 cut(s) 62, 115, 256, 311, 404, 427, 453, 489, 525
CviKI_1 RGCY 9 cut(s) 62, 115, 256, 311, 404, 427, 453, 489, 525
CviQI GTAC 3 cut(s) 16, 75, 173
DdeI CTNAG 1 cut(s) 146
DpnI GATC 4 cut(s) 222, 432, 501, 510
DpnII GATC 4 cut(s) 220, 430, 499, 508
EaeI YGGCCR 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 103
FaeI CATG 5 cut(s) 197, 274, 380, 506, 530
FaqI GGGAC 1 cut(s) 116
FatI CATG 5 cut(s) 193, 270, 376, 502, 526
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 6 cut(s) 60, 166, 312, 405, 466, 523
FokI GGATG 3 cut(s) 347, 374, 462
Fsp4HI GCNGC 6 cut(s) 60, 166, 312, 405, 466, 523
GlaI GCGC 2 cut(s) 448, 464
GluI GCNGC 6 cut(s) 60, 166, 312, 405, 466, 523
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 2 cut(s) 311, 404
HapII CCGG 1 cut(s) 277
HgaI GACGC 1 cut(s) 167
HhaI GCGC 2 cut(s) 449, 465
Hin1II CATG 5 cut(s) 197, 274, 380, 506, 530
Hin6I GCGC 2 cut(s) 447, 463
HinP1I GCGC 2 cut(s) 447, 463
HpaII CCGG 1 cut(s) 277
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 1 cut(s) 347
Hpy188III TCNNGA 2 cut(s) 410, 479
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 2 cut(s) 65, 417
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 3 cut(s) 216, 286, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 222
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 5 cut(s) 197, 274, 380, 506, 530
HspAI GCGC 2 cut(s) 447, 463
KflI GGGWCCC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 4 cut(s) 220, 430, 499, 508
LmnI GCTCC 4 cut(s) 112, 412, 458, 486
LpnPI CCDG 6 cut(s) 57, 290, 403, 423, 435, 492
Lsp1109I GCAGC 3 cut(s) 71, 177, 452
MaeII ACGT 1 cut(s) 343
MalI GATC 4 cut(s) 222, 432, 501, 510
MbiI CCGCTC 1 cut(s) 407
MboI GATC 4 cut(s) 220, 430, 499, 508
MboII GAAGA 4 cut(s) 22, 59, 62, 65
MluCI AATT 1 cut(s) 87
MnlI CCTC 6 cut(s) 93, 191, 238, 297, 351, 394
MroXI GAANNNNTTC 1 cut(s) 343
MslI CAYNNNNRTG 1 cut(s) 480
MspA1I CMGCKG 2 cut(s) 62, 168
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 213, 222
NciI CCSGG 1 cut(s) 277
NdeII GATC 4 cut(s) 220, 430, 499, 508
NlaIII CATG 5 cut(s) 197, 274, 380, 506, 530
NlaIV GGNNCC 4 cut(s) 104, 105, 454, 488
NspI RCATGY 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 343
PkrI GCNGC 6 cut(s) 61, 167, 313, 406, 467, 524
PpuMI RGGWCCY 1 cut(s) 103
Psp1406I AACGTT 1 cut(s) 343
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 4 cut(s) 104, 105, 454, 488
PspPI GGNCC 1 cut(s) 103
PspPPI RGGWCCY 1 cut(s) 103
PstI CTGCAG 1 cut(s) 499
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 3 cut(s) 17, 76, 174
RsaNI GTAC 3 cut(s) 16, 75, 173
RseI CAYNNNNRTG 1 cut(s) 480
SatI GCNGC 6 cut(s) 60, 166, 312, 405, 466, 523
Sau3AI GATC 4 cut(s) 220, 430, 499, 508
Sau96I GGNCC 1 cut(s) 103
ScaI AGTACT 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 277
SetI ASST 6 cut(s) 64, 76, 117, 156, 308, 346
SfcI CTRYAG 1 cut(s) 495
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 1 cut(s) 87
SsiI CCGC 3 cut(s) 168, 312, 405
StyD4I CCNGG 1 cut(s) 275
TaiI ACGT 1 cut(s) 346
TasI AATT 1 cut(s) 87
TatI WGTACW 2 cut(s) 15, 172
TauI GCSGC 2 cut(s) 314, 407
TscAI CASTG 1 cut(s) 223
TseI GCWGC 4 cut(s) 59, 165, 465, 522
TspDTI ATGAA 5 cut(s) 17, 99, 309, 380, 464
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 103
XceI RCATGY 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 343
ZrmI AGTACT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.