Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008786

Physical Location & Seq

Genomic Coordinates Reverse (-)

23711177 .. 23714177

Gene Structure 3001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1235500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTTTTTAATCAGTCACTGAAGTTTGTTCTTGCCCTCTCTTTTCTTGTCCTTTATTTTAACTCCATTAATTTGCATGCCCTTAACATTGGTGTCCAAGCCACAGATGCCTCCATTGTTCTGAGTAAAGATTGCAGTAGACAATGTGAGTCAGAGTTCTGTACAGTGCCTCCATTTTTGAGATATGGGAAGTATTGTGGGCTTTTATACAGTGGATGCCCAGGGGAGCAGCCCTGCGATGGCCTAGATGCATGTTGTATGAAGCATGATAACTGCGTTCAATCGAAAAACAATGACTATCTAAGCTCAGAGTGCAGCCAAACGTTCCTAAATTGCATGGCAGAGTTCAAAAACAAAAGAGGGAAAACGTTTAAGGGGAACAAATGCCATGTCGAGGATGTTGTCGAAGTTATAACCCTTGTCATGGAGGCTGCTTTAGTTGCTGGAAGATATCTCCATAAGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0008289 GO:0012505 GO:0016298 GO:0016787 GO:0016788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.27

Weight (kDa)

6.85

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06925 AT2G06925
fragaria_vesca	FvH4_4g06380
malus_domestica	MD13G1235500.v1.1 MD16G1240200.v1.1
prunus_persica	Prupe.1G066500_v2.0.a1 Prupe.1G066500_v2.0.a1 Prupe.1G066900_v2.0.a1 Prupe.1G066900_v2.0.a1
pyrus_communis	pycom13g20800 pycom16g20100
rosa_chinensis	RchiOBHm_Chr4g0398131
rosa_laevigata	RLG00000009384
rosa_multiflora	Rmu_co8126840.1_g000001 Rmu_sc0009399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343030
rosa_rugosa	Rorug04G0006100 Rorug04G0006200
rosa_samantha	Rh4AG083300 Rh4BG081000 Rh4CG090300 Rh4DG075900
rosa_wichuraiana	Rw4G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	139
AclI	AACGTT	2 cut(s)	323, 368
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	3 cut(s)	239, 394, 424
AgsI	TTSAA	2 cut(s)	281, 349
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
AlwNI	CAGNNNCTG	1 cut(s)	19
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	3 cut(s)	229, 315, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	375, 407
AseI	ATTAAT	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	241, 327, 418
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	448
BciT130I	CCWGG	1 cut(s)	222
BfaI	CTAG	1 cut(s)	245
BisI	GCNGC	3 cut(s)	230, 316, 432
BlsI	GCNGC	3 cut(s)	231, 317, 433
Bme1390I	CCNGG	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	3 cut(s)	97, 206, 238
BsaJI	CCNNGG	2 cut(s)	220, 221
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 394, 424
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	220, 221
BseGI	GGATG	2 cut(s)	221, 403
BseLI	CCNNNNNNNGG	3 cut(s)	239, 394, 424
BseMII	CTCAG	2 cut(s)	113, 321
BseXI	GCAGC	3 cut(s)	241, 327, 418
BsgI	GTGCAG	1 cut(s)	334
BshFI	GGCC	1 cut(s)	243
BslI	CCNNNNNNNGG	3 cut(s)	239, 394, 424
BsnI	GGCC	1 cut(s)	243
Bsp1407I	TGTACA	1 cut(s)	161
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	2 cut(s)	114, 320
BsrGI	TGTACA	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	220, 221
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	166, 212
BstAUI	TGTACA	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	122, 302, 307
BstF5I	GGATG	2 cut(s)	221, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 312, 440
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	2 cut(s)	80, 255
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	241, 327, 418
BsuRI	GGCC	1 cut(s)	243
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	221, 403
BtsIMutI	CAGTG	3 cut(s)	17, 171, 217
Cac8I	GCNNGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	6 cut(s)	77, 252, 266, 337, 389, 424
CviJI	RGCY	8 cut(s)	101, 202, 232, 243, 306, 318, 431, 463
CviKI_1	RGCY	8 cut(s)	101, 202, 232, 243, 306, 318, 431, 463
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	3 cut(s)	122, 302, 307
Eco32I	GATATC	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	452
EcoT22I	ATGCAT	1 cut(s)	253
FaeI	CATG	6 cut(s)	80, 255, 269, 340, 392, 427
FatI	CATG	6 cut(s)	76, 251, 265, 336, 388, 423
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	3 cut(s)	230, 316, 432
FokI	GGATG	2 cut(s)	228, 410
Fsp4HI	GCNGC	3 cut(s)	230, 316, 432
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	3 cut(s)	230, 316, 432
HaeIII	GGCC	1 cut(s)	243
Hin1II	CATG	6 cut(s)	80, 255, 269, 340, 392, 427
HinfI	GANTC	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	3 cut(s)	123, 154, 310
Hpy8I	GTNNAC	1 cut(s)	140
HpyCH4III	ACNGT	2 cut(s)	166, 212
HpyCH4IV	ACGT	2 cut(s)	323, 368
HpyCH4V	TGCA	5 cut(s)	76, 135, 251, 315, 336
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 312, 440
HpyF3I	CTNAG	3 cut(s)	122, 302, 307
HpySE526I	ACGT	2 cut(s)	323, 368
Hsp92II	CATG	6 cut(s)	80, 255, 269, 340, 392, 427
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	4 cut(s)	207, 234, 247, 429
Lsp1109I	GCAGC	3 cut(s)	241, 327, 418
LweI	GCATC	3 cut(s)	97, 206, 238
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	2 cut(s)	323, 368
MaeIII	GTNAC	1 cut(s)	15
MboII	GAAGA	1 cut(s)	459
MluCI	AATT	2 cut(s)	70, 331
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	6 cut(s)	47, 121, 180, 353, 388, 421
Mph1103I	ATGCAT	1 cut(s)	253
MseI	TTAA	5 cut(s)	9, 60, 69, 84, 372
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	107, 312, 440
NlaIII	CATG	6 cut(s)	80, 255, 269, 340, 392, 427
NmuCI	GTSAC	1 cut(s)	15
NsiI	ATGCAT	1 cut(s)	253
NspI	RCATGY	2 cut(s)	80, 255
PaeI	GCATGC	1 cut(s)	80
PasI	CCCWGGG	1 cut(s)	221
PkrI	GCNGC	3 cut(s)	231, 317, 433
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PshBI	ATTAAT	1 cut(s)	69
PsiI	TTATAA	1 cut(s)	413
Psp1406I	AACGTT	2 cut(s)	323, 368
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	5 cut(s)	9, 60, 69, 84, 372
SatI	GCNGC	3 cut(s)	230, 316, 432
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	3 cut(s)	308, 326, 371
SfaNI	GCATC	3 cut(s)	97, 206, 238
SphI	GCATGC	1 cut(s)	80
Sse9I	AATT	2 cut(s)	70, 331
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	166, 212
TaiI	ACGT	2 cut(s)	326, 371
TaqI	TCGA	3 cut(s)	284, 393, 405
TasI	AATT	2 cut(s)	70, 331
TatI	WGTACW	1 cut(s)	161
Tru1I	TTAA	5 cut(s)	9, 60, 69, 84, 372
Tru9I	TTAA	5 cut(s)	9, 60, 69, 84, 372
TscAI	CASTG	3 cut(s)	24, 171, 217
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	3 cut(s)	229, 315, 431
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	275
TspRI	CASTG	3 cut(s)	24, 171, 217
VspI	ATTAAT	1 cut(s)	69
XceI	RCATGY	2 cut(s)	80, 255
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	1 cut(s)	245
Zsp2I	ATGCAT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.