Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009399.1

Orthogroup ID

OG0008786

Physical Location & Seq

Genomic Coordinates Reverse (-)

643 .. 2187

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009399.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atggttgattttcttaagcagtcacggaagtttgtaatcctaattgtcctctattttaactccattcctcatgttcgtccccttaacattggtgttcaagacacagatacttccatcgttctgagtaaagattgcagtagaaagtgcgagtctgagttctgtacagtgcctccattgctaagatatggaaagtattgtgggcttttgtatagtggatgccctggagagaaaccctgtgatggtctcgattcttgttgtatgcagcatgatgcctgtgtacaatctaagaacaatgactatctgagctcagagtgcagcttcagatcagcaacaaatcagaaaaggaaaaggcttgaaagaaaagcatcaatttcaatgaaaattttcatcggagaaatgccacaaacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0008289 GO:0012505 GO:0016298 GO:0016787 GO:0016788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.4

Weight (kDa)

8.69

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06925 AT2G06925
fragaria_vesca	FvH4_4g06380
malus_domestica	MD13G1235500.v1.1 MD16G1240200.v1.1
prunus_persica	Prupe.1G066500_v2.0.a1 Prupe.1G066500_v2.0.a1 Prupe.1G066900_v2.0.a1 Prupe.1G066900_v2.0.a1
pyrus_communis	pycom13g20800 pycom16g20100
rosa_chinensis	RchiOBHm_Chr4g0398131
rosa_laevigata	RLG00000009384
rosa_multiflora	Rmu_co8126840.1_g000001 Rmu_sc0009399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343030
rosa_rugosa	Rorug04G0006100 Rorug04G0006200
rosa_samantha	Rh4AG083300 Rh4BG081000 Rh4CG090300 Rh4DG075900
rosa_wichuraiana	Rw4G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	304
AfaI	GTAC	2 cut(s)	163, 279
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	98, 356, 375
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	2 cut(s)	306, 318
AluI	AGCT	2 cut(s)	306, 318
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	262, 315
ApoI	RAATTY	1 cut(s)	381
Asp700I	GAANNNNTTC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	274, 327
BccI	CCATC	2 cut(s)	122, 233
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	248
BfrI	CTTAAG	1 cut(s)	14
BisI	GCNGC	2 cut(s)	263, 316
BlsI	GCNGC	2 cut(s)	264, 317
Bme1390I	CCNGG	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	3 cut(s)	206, 259, 374
BpmI	CTGGAG	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	4 cut(s)	113, 144, 293, 321
BseXI	GCAGC	2 cut(s)	274, 327
BsgI	GTGCAG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	63
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp1407I	TGTACA	2 cut(s)	161, 277
Bsp143I	GATC	1 cut(s)	323
BspCNI	CTCAG	4 cut(s)	114, 145, 294, 320
BspTI	CTTAAG	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	173
BsrGI	TGTACA	2 cut(s)	161, 277
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	166
BstAFI	CTTAAG	1 cut(s)	14
BstAUI	TGTACA	2 cut(s)	161, 277
BstDEI	CTNAG	6 cut(s)	122, 153, 179, 285, 302, 307
BstF5I	GGATG	1 cut(s)	221
BstKTI	GATC	1 cut(s)	326
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	323
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 312
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	274, 327
BtsCI	GGATG	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	171
Csp6I	GTAC	2 cut(s)	162, 278
CviAII	CATG	2 cut(s)	71, 266
CviJI	RGCY	4 cut(s)	202, 306, 318, 352
CviKI_1	RGCY	4 cut(s)	202, 306, 318, 352
CviQI	GTAC	2 cut(s)	162, 278
DdeI	CTNAG	6 cut(s)	122, 153, 179, 285, 302, 307
DpnI	GATC	1 cut(s)	325
DpnII	GATC	1 cut(s)	323
Ecl136II	GAGCTC	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	248
Eco53kI	GAGCTC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	308
FaeI	CATG	2 cut(s)	74, 269
FaiI	YATR	5 cut(s)	72, 186, 210, 260, 267
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	2 cut(s)	70, 265
Fnu4HI	GCNGC	2 cut(s)	263, 316
FokI	GGATG	1 cut(s)	228
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	2 cut(s)	263, 316
GluI	GCNGC	2 cut(s)	263, 316
GsuI	CTGGAG	1 cut(s)	243
Hin1II	CATG	2 cut(s)	74, 269
HinfI	GANTC	2 cut(s)	149, 248
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	7 cut(s)	123, 154, 303, 310, 323, 339, 392
Hpy188III	TCNNGA	2 cut(s)	98, 245
Hpy8I	GTNNAC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	135, 262, 315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 312
HpyF3I	CTNAG	6 cut(s)	122, 153, 179, 285, 302, 307
Hsp92II	CATG	2 cut(s)	74, 269
Kzo9I	GATC	1 cut(s)	323
LpnPI	CCDG	4 cut(s)	207, 234, 247, 286
Lsp1109I	GCAGC	2 cut(s)	274, 327
LweI	GCATC	3 cut(s)	206, 259, 374
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	1 cut(s)	325
MboI	GATC	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	3 cut(s)	42, 369, 381
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	3 cut(s)	59, 78, 180
MroXI	GAANNNNTTC	1 cut(s)	383
MseI	TTAA	3 cut(s)	15, 57, 84
MspCI	CTTAAG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	175, 312
NdeII	GATC	1 cut(s)	323
NlaIII	CATG	2 cut(s)	74, 269
NmuCI	GTSAC	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	264, 317
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
RsaI	GTAC	2 cut(s)	163, 279
RsaNI	GTAC	2 cut(s)	162, 278
SacI	GAGCTC	1 cut(s)	308
SaqAI	TTAA	3 cut(s)	15, 57, 84
SatI	GCNGC	2 cut(s)	263, 316
Sau3AI	GATC	1 cut(s)	323
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	3 cut(s)	308, 320, 410
SfaNI	GCATC	3 cut(s)	206, 259, 374
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	3 cut(s)	42, 369, 381
SstI	GAGCTC	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	246
TasI	AATT	3 cut(s)	42, 369, 381
TatI	WGTACW	2 cut(s)	161, 277
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	3 cut(s)	15, 57, 84
Tru9I	TTAA	3 cut(s)	15, 57, 84
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	2 cut(s)	262, 315
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	2 cut(s)	376, 392
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	171
Vha464I	CTTAAG	1 cut(s)	14
XapI	RAATTY	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.