Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008786

Physical Location & Seq

Genomic Coordinates Reverse (-)

11189071 .. 11193928

Gene Structure 4858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG075900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCCATTGCAAGAAGATTTGACATAATAATGGCGCTCAGGATGGGTGTTTATAATGTCATGCTTCTTGGGTTTGCAATGGCTTGGCTTTCTTGCGTGGTCGATGGTGCTTCACGTCGGCATGTTTTCGAAGTAGGTAGCCGTGGTCGCCTTCCCGATCATAACACCATCAGAACAGTTTTGGAAGTTGCCACCTCCAAGGGAGAAATTAAGCCTCTCAACGAGACAGAAGCTGCACAGAGTAAAGATTGCAGTAGAAAGTGCGAGTCTGAGTTCTGTACGGTGCCTCCATTGCTAAGATATGGAAAGTACTGTGGGCTTTTGTATAGTGGATGCGCAGGGGAGAAACCCTGTGATGGTCTAGATTCTTGTTGTATGCAGCATGATGCCTGTGTACAATCTAAGAACAATGACTATCTGAGCTCAGAGTGCAGCCAAAATTTCCTAAAATGCATGTCACAATTCAAAAACGCAAAAGGACGGACCTTCAAAGGGAGCAAATGCAAAGTTGAGGATGTTGTGGAAGTTATCACAATTGTGATGGAGGCTGCATTATTTGCTGGAAGATATCTCCACAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0008289 GO:0012505 GO:0016298 GO:0016787 GO:0016788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

21.54

Weight (kDa)

8.54

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06925 AT2G06925
fragaria_vesca	FvH4_4g06380
malus_domestica	MD13G1235500.v1.1 MD16G1240200.v1.1
prunus_persica	Prupe.1G066500_v2.0.a1 Prupe.1G066500_v2.0.a1 Prupe.1G066900_v2.0.a1 Prupe.1G066900_v2.0.a1
pyrus_communis	pycom13g20800 pycom16g20100
rosa_chinensis	RchiOBHm_Chr4g0398131
rosa_laevigata	RLG00000009384
rosa_multiflora	Rmu_co8126840.1_g000001 Rmu_sc0009399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343030
rosa_rugosa	Rorug04G0006100 Rorug04G0006200
rosa_samantha	Rh4AG083300 Rh4BG081000 Rh4CG090300 Rh4DG075900
rosa_wichuraiana	Rw4G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
Acc16I	TGCGCA	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	439
AfaI	GTAC	3 cut(s)	280, 311, 396
AfiI	CCNNNNNNNGG	2 cut(s)	356, 492
AgsI	TTSAA	2 cut(s)	466, 490
AjiI	CACGTC	1 cut(s)	116
AleI	CACNNNNGTG	1 cut(s)	536
AluBI	AGCT	2 cut(s)	233, 423
AluI	AGCT	2 cut(s)	233, 423
Alw21I	GWGCWC	1 cut(s)	425
Alw26I	GTCTC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	233, 379, 432, 548
ApoI	RAATTY	1 cut(s)	439
AspLEI	GCGC	2 cut(s)	37, 338
AspS9I	GGNCC	1 cut(s)	483
AsuII	TTCGAA	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	483
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	4 cut(s)	220, 391, 444, 535
BccI	CCATC	5 cut(s)	37, 98, 176, 350, 535
BceAI	ACGGC	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	4 cut(s)	234, 380, 433, 549
BlsI	GCNGC	4 cut(s)	235, 381, 434, 550
BmcAI	AGTACT	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	483
BmgBI	CACGTC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	285
BmsI	GCATC	2 cut(s)	323, 376
Bpu10I	CCTNAGC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	142, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 492
Bse3DI	GCAATG	3 cut(s)	6, 84, 290
BseDI	CCNNGG	2 cut(s)	142, 198
BseGI	GGATG	3 cut(s)	48, 338, 520
BseLI	CCNNNNNNNGG	2 cut(s)	356, 492
BseMI	GCAATG	3 cut(s)	6, 84, 290
BseMII	CTCAG	4 cut(s)	52, 261, 410, 438
BseXI	GCAGC	4 cut(s)	220, 391, 444, 535
BsgI	GTGCAG	2 cut(s)	219, 451
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	356, 492
BsmAI	GTCTC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp1407I	TGTACA	1 cut(s)	394
Bsp143I	GATC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	51, 262, 411, 437
BspLI	GGNNCC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	283
BsrDI	GCAATG	3 cut(s)	6, 84, 290
BsrGI	TGTACA	1 cut(s)	394
BssECI	CCNNGG	2 cut(s)	142, 198
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	198
Bst4CI	ACNGT	3 cut(s)	178, 283, 314
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstAUI	TGTACA	1 cut(s)	394
BstBI	TTCGAA	1 cut(s)	129
BstDEI	CTNAG	6 cut(s)	38, 270, 296, 402, 419, 424
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	3 cut(s)	48, 338, 520
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	2 cut(s)	37, 338
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 292, 429, 557
BstNSI	RCATGY	2 cut(s)	125, 457
BstV1I	GCAGC	4 cut(s)	220, 391, 444, 535
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	142
BtrI	CACGTC	1 cut(s)	116
BtsCI	GGATG	3 cut(s)	48, 338, 520
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	2 cut(s)	37, 338
Cfr13I	GGNCC	1 cut(s)	483
Csp6I	GTAC	3 cut(s)	279, 310, 395
CspCI	CAANNNNNGTGG	1 cut(s)	563
CviAII	CATG	4 cut(s)	61, 122, 383, 454
CviQI	GTAC	3 cut(s)	279, 310, 395
DdeI	CTNAG	6 cut(s)	38, 270, 296, 402, 419, 424
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	569
Eco47I	GGWCC	1 cut(s)	483
Eco53kI	GAGCTC	1 cut(s)	423
EcoICRI	GAGCTC	1 cut(s)	423
EcoRV	GATATC	1 cut(s)	569
EcoT14I	CCWWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	4 cut(s)	64, 125, 386, 457
FatI	CATG	4 cut(s)	60, 121, 382, 453
Fnu4HI	GCNGC	4 cut(s)	234, 380, 433, 549
FokI	GGATG	3 cut(s)	55, 345, 527
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	4 cut(s)	234, 380, 433, 549
FspBI	CTAG	1 cut(s)	362
FspI	TGCGCA	1 cut(s)	337
GlaI	GCGC	2 cut(s)	36, 337
GluI	GCNGC	4 cut(s)	234, 380, 433, 549
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	2 cut(s)	37, 338
Hin1II	CATG	4 cut(s)	64, 125, 386, 457
Hin6I	GCGC	2 cut(s)	35, 336
HinP1I	GCGC	2 cut(s)	35, 336
HinfI	GANTC	2 cut(s)	266, 365
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	4 cut(s)	173, 271, 420, 427
Hpy188III	TCNNGA	3 cut(s)	40, 155, 362
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	161, 496
HpyCH4III	ACNGT	3 cut(s)	178, 283, 314
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	9 cut(s)	11, 77, 236, 252, 379, 432, 453, 504, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 292, 429, 557
HpyF3I	CTNAG	6 cut(s)	38, 270, 296, 402, 419, 424
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	4 cut(s)	64, 125, 386, 457
HspAI	GCGC	2 cut(s)	35, 336
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	495
LpnPI	CCDG	5 cut(s)	25, 324, 364, 403, 546
Lsp1109I	GCAGC	4 cut(s)	220, 391, 444, 535
LweI	GCATC	2 cut(s)	323, 376
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	27, 576
MfeI	CAATTG	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	425
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	207, 439, 461, 534
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	5 cut(s)	205, 225, 297, 505, 538
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	2 cut(s)	29, 536
Msp20I	TGGCCA	1 cut(s)	5
MunI	CAATTG	1 cut(s)	534
MwoI	GCNNNNNNNGC	4 cut(s)	147, 292, 429, 557
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	4 cut(s)	64, 125, 386, 457
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	456
NsbI	TGCGCA	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	455
NspI	RCATGY	2 cut(s)	125, 457
NspV	TTCGAA	1 cut(s)	129
OliI	CACNNNNGTG	1 cut(s)	536
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	235, 381, 434, 550
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	483
PstNI	CAGNNNCTG	1 cut(s)	233
RsaI	GTAC	3 cut(s)	280, 311, 396
RsaNI	GTAC	3 cut(s)	279, 310, 395
RseI	CAYNNNNRTG	2 cut(s)	29, 536
SacI	GAGCTC	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	4 cut(s)	234, 380, 433, 549
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	483
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	7 cut(s)	118, 139, 197, 235, 425, 488, 583
SfaNI	GCATC	2 cut(s)	323, 376
SfuI	TTCGAA	1 cut(s)	129
SinI	GGWCC	1 cut(s)	483
SmiMI	CAYNNNNRTG	2 cut(s)	29, 536
Sse9I	AATT	4 cut(s)	207, 439, 461, 534
SspMI	CTAG	1 cut(s)	362
SstI	GAGCTC	1 cut(s)	425
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	3 cut(s)	178, 283, 314
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	102, 129
TasI	AATT	4 cut(s)	207, 439, 461, 534
TatI	WGTACW	2 cut(s)	309, 394
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	4 cut(s)	233, 379, 432, 548
Tsp45I	GTSAC	1 cut(s)	456
TspGWI	ACGGA	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	483
XapI	RAATTY	1 cut(s)	439
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	2 cut(s)	125, 457
XspI	CTAG	1 cut(s)	362
ZrmI	AGTACT	1 cut(s)	311
Zsp2I	ATGCAT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.