Rorug04G0006200

phospholipase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
1098125 .. 1098937
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0006200.1

Sequence Viewer

Length: 813 bp
ATGAGAAACAAATGCAGTAAGGATGTTGCTAGTTCCATCACTGAAGATCCCCACCTAGAAATCTTAGTAAGGCTCCCAGTAAAATCTGTCATTCAGTTTCAATGTGTATGCAAGCGGTGGACGGGTTTGATTCGCAATTCAAGTTTTGTTACAACACATATCAGACAACATTTCCATACCCATCTAATTACGGATGACCGCTCAAGGTTTGACCAAATTGAGCTTTGCTCTCTTTTGCCTTTTGAAAGATTTGAGCAGTCCCTGGAGTTAAAACCTCCCTTTCATCCCCAACTAGACTATAAATCCCGACTAGACTACTTCAAGATATATGGTTCAACGAATGGTTTATTGTCTCTTGCTGGGAATGTAATGGATTCAAATAGCCCTATATACATATGGAACCCCTCTGTTAGGAAATTCAGGACTCTTCCACAACCAACATTCGATCATTATTGTGTGGACTATTTTCCCAAGCATGTTGATATGCCTCTCTTATTTGGATTCCACTCAGGTCTAAATGACTATAAGGTAATAAGGATGATGCTGCCTGGTTCCATCAAAATGGAGGTTTATACTCTTAGCACAAATTCTTGGACGATTATTCAAGTCATGCCACCTTGGCTCAATACTACGAAGTTTTCTACTCGATATGAATTTTGGAATGGAATGGAATATTGGCTTGCTACGAGAGATTTAATGGTTAGGGTTGTGTTGTTTGATACTAATAATGAAGAATTTGAAGAAGTGGTGATCCTAATTACTATTTTGAATGATGATTGGGATGCATATATCAAAGTGATGATTGGGATGTAA

Protein Analysis

270

Amino Acids

31.87

Weight (kDa)

6.5

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 82 - 252 8.1e-12 F-box associated beta propeller domain
FBA_3 PF08268 100 - 249 1.6e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 201
AciI CCGC 2 cut(s) 115, 199
AclWI GGATC 2 cut(s) 41, 745
AcsI RAATTY 4 cut(s) 416, 586, 653, 734
AcuI CTGAAG 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 411
AgsI TTSAA 9 cut(s) 101, 141, 245, 322, 336, 378, 605, 740, 769
AjnI CCWGG 2 cut(s) 261, 547
AjuI GAANNNNNNNTTGG 2 cut(s) 658, 690
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 357
AlwI GGATC 2 cut(s) 41, 745
AlwNI CAGNNNCTG 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 544
ApoI RAATTY 4 cut(s) 416, 586, 653, 734
AsuHPI GGTGA 1 cut(s) 760
BbvI GCAGC 1 cut(s) 531
BccI CCATC 3 cut(s) 44, 189, 563
BciT130I CCWGG 2 cut(s) 263, 549
BcoDI GTCTC 1 cut(s) 357
BfaI CTAG 4 cut(s) 30, 56, 293, 311
BglI GCCNNNNNGGC 1 cut(s) 619
BisI GCNGC 1 cut(s) 545
BlsI GCNGC 1 cut(s) 546
Bme1390I CCNGG 2 cut(s) 263, 549
BmiI GGNNCC 3 cut(s) 74, 401, 553
BmrFI CCNGG 2 cut(s) 263, 549
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 531, 772
BmuI ACTGGG 1 cut(s) 71
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 261, 617
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 2 cut(s) 263, 549
BseDI CCNNGG 2 cut(s) 261, 617
BseGI GGATG 6 cut(s) 28, 199, 283, 543, 787, 813
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 531
BseYI CCCAGC 1 cut(s) 359
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 1 cut(s) 411
BsmAI GTCTC 1 cut(s) 357
BsmFI GGGAC 1 cut(s) 244
Bsp143I GATC 3 cut(s) 46, 445, 750
BspACI CCGC 2 cut(s) 115, 199
BspCNI CTCAG 1 cut(s) 521
BspLI GGNNCC 3 cut(s) 74, 401, 553
BspPI GGATC 2 cut(s) 41, 745
BsrBI CCGCTC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 261, 617
BssMI GATC 3 cut(s) 46, 445, 750
BssT1I CCWWGG 1 cut(s) 617
Bst2UI CCWGG 2 cut(s) 263, 549
Bst6I CTCTTC 1 cut(s) 432
BstC8I GCNNGC 2 cut(s) 113, 681
BstDEI CTNAG 3 cut(s) 64, 508, 578
BstENI CCTNNNNNAGG 1 cut(s) 409
BstF5I GGATG 6 cut(s) 28, 199, 283, 543, 787, 813
BstKTI GATC 3 cut(s) 49, 448, 753
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 3 cut(s) 46, 445, 750
BstMWI GCNNNNNNNGC 1 cut(s) 619
BstNI CCWGG 2 cut(s) 263, 549
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 2 cut(s) 261, 547
BstV1I GCAGC 1 cut(s) 531
BstX2I RGATCY 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 562
BstYI RGATCY 1 cut(s) 46
BtsCI GGATG 6 cut(s) 28, 199, 283, 543, 787, 813
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 113, 681
CaiI CAGNNNCTG 1 cut(s) 262
CviAII CATG 2 cut(s) 476, 610
CviJI RGCY 5 cut(s) 73, 223, 384, 622, 679
CviKI_1 RGCY 5 cut(s) 73, 223, 384, 622, 679
DdeI CTNAG 3 cut(s) 64, 508, 578
DpnI GATC 3 cut(s) 48, 447, 752
DpnII GATC 3 cut(s) 46, 445, 750
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 617
Eco57I CTGAAG 1 cut(s) 63
EcoNI CCTNNNNNAGG 1 cut(s) 409
EcoRII CCWGG 2 cut(s) 261, 547
EcoT14I CCWWGG 1 cut(s) 617
EcoT22I ATGCAT 1 cut(s) 787
ErhI CCWWGG 1 cut(s) 617
FaeI CATG 2 cut(s) 479, 613
FaqI GGGAC 1 cut(s) 244
FatI CATG 2 cut(s) 475, 609
FauNDI CATATG 1 cut(s) 395
Fnu4HI GCNGC 1 cut(s) 545
FokI GGATG 5 cut(s) 35, 206, 270, 550, 794
Fsp4HI GCNGC 1 cut(s) 545
FspBI CTAG 4 cut(s) 30, 56, 293, 311
GluI GCNGC 1 cut(s) 545
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 284
Hin1II CATG 2 cut(s) 479, 613
HinfI GANTC 4 cut(s) 130, 374, 424, 501
HphI GGTGA 1 cut(s) 760
Hpy166II GTNNAC 2 cut(s) 120, 460
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 3 cut(s) 306, 322, 421
Hpy8I GTNNAC 2 cut(s) 120, 460
HpyCH4V TGCA 3 cut(s) 15, 111, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 619
HpyF3I CTNAG 3 cut(s) 64, 508, 578
Hsp92II CATG 2 cut(s) 479, 613
Kzo9I GATC 3 cut(s) 46, 445, 750
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 8 cut(s) 90, 248, 275, 345, 406, 495, 534, 561
Lsp1109I GCAGC 1 cut(s) 531
LweI GCATC 2 cut(s) 531, 772
MaeI CTAG 4 cut(s) 30, 56, 293, 311
MaeIII GTNAC 1 cut(s) 148
MalI GATC 3 cut(s) 48, 447, 752
MbiI CCGCTC 1 cut(s) 201
MboI GATC 3 cut(s) 46, 445, 750
MboII GAAGA 4 cut(s) 56, 419, 743, 752
MflI RGATCY 1 cut(s) 46
MluCI AATT 8 cut(s) 136, 186, 216, 416, 586, 653, 734, 756
MlyI GAGTC 1 cut(s) 418
MnlI CCTC 4 cut(s) 285, 415, 498, 559
Mph1103I ATGCAT 1 cut(s) 787
MseI TTAA 2 cut(s) 269, 695
MslI CAYNNNNRTG 2 cut(s) 453, 560
MspR9I CCNGG 2 cut(s) 263, 549
MvaI CCWGG 2 cut(s) 263, 549
MwoI GCNNNNNNNGC 1 cut(s) 619
NdeI CATATG 1 cut(s) 395
NdeII GATC 3 cut(s) 46, 445, 750
NlaIII CATG 2 cut(s) 479, 613
NlaIV GGNNCC 3 cut(s) 74, 401, 553
NsiI ATGCAT 1 cut(s) 787
NspI RCATGY 1 cut(s) 479
PfeI GAWTC 3 cut(s) 130, 374, 501
PkrI GCNGC 1 cut(s) 546
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Psp6I CCWGG 2 cut(s) 261, 547
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 2 cut(s) 261, 547
PspN4I GGNNCC 3 cut(s) 74, 401, 553
PstNI CAGNNNCTG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 46
RseI CAYNNNNRTG 2 cut(s) 453, 560
SaqAI TTAA 2 cut(s) 269, 695
SatI GCNGC 1 cut(s) 545
Sau3AI GATC 3 cut(s) 46, 445, 750
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 2 cut(s) 263, 549
SetI ASST 8 cut(s) 57, 209, 225, 277, 514, 531, 570, 619
SfaNI GCATC 2 cut(s) 531, 772
SmiMI CAYNNNNRTG 2 cut(s) 453, 560
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 8 cut(s) 136, 186, 216, 416, 586, 653, 734, 756
SsiI CCGC 2 cut(s) 115, 199
SspI AATATT 1 cut(s) 674
SspMI CTAG 4 cut(s) 30, 56, 293, 311
StyD4I CCNGG 2 cut(s) 261, 547
StyI CCWWGG 1 cut(s) 617
TaqI TCGA 2 cut(s) 444, 646
TasI AATT 8 cut(s) 136, 186, 216, 416, 586, 653, 734, 756
TfiI GAWTC 3 cut(s) 130, 374, 501
Tru1I TTAA 2 cut(s) 269, 695
Tru9I TTAA 2 cut(s) 269, 695
TscAI CASTG 1 cut(s) 46
TseI GCWGC 1 cut(s) 544
TspDTI ATGAA 3 cut(s) 272, 666, 744
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 46
XagI CCTNNNNNAGG 1 cut(s) 409
XapI RAATTY 4 cut(s) 416, 586, 653, 734
XceI RCATGY 1 cut(s) 479
XspI CTAG 4 cut(s) 30, 56, 293, 311
Zsp2I ATGCAT 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.