Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008786

Physical Location & Seq

Genomic Coordinates Reverse (-)

16271044 .. 16280338

Gene Structure 9295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG090300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCCATTGCAAGAAGATTTGACACGATAATGGCGCTCAGGATGGGTGTTTATAATGTCATGCTTCTTGGGTTTGCAATGGCTTGGCTTTCTTGTGTGGTCGATGGTGCTTCACGTCGGCATGTTTTCGAAGTAGGTAGCCGTGGTCGCCTTCCCGATCATAACACCATCAGAACAGTTTTGGAAGTTGCCACCTCCAAGGGAGAAATTAAGCCTCTCAACGAGACAGAAGCTGCACAGAGTAAAGATTGCAGTAGAAAGTGCGAGTCTGAGTTCTGTACAGTGCCTCCATTGCTAAGATATGGAAAGTATTGTGGGCTTTTGTATAGTGGATGCCCTGGGGAGAAACCCTGTGATGGTCTAGATTCTTGTTGTATGCAGCATGATGCCTGTGTACAATCTAAGAACAGTAAGTTCATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0008289 GO:0012505 GO:0016298 GO:0016787 GO:0016788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.58

Weight (kDa)

8.34

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06925 AT2G06925
fragaria_vesca	FvH4_4g06380
malus_domestica	MD13G1235500.v1.1 MD16G1240200.v1.1
prunus_persica	Prupe.1G066500_v2.0.a1 Prupe.1G066500_v2.0.a1 Prupe.1G066900_v2.0.a1 Prupe.1G066900_v2.0.a1
pyrus_communis	pycom13g20800 pycom16g20100
rosa_chinensis	RchiOBHm_Chr4g0398131
rosa_laevigata	RLG00000009384
rosa_multiflora	Rmu_co8126840.1_g000001 Rmu_sc0009399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343030
rosa_rugosa	Rorug04G0006100 Rorug04G0006200
rosa_samantha	Rh4AG083300 Rh4BG081000 Rh4CG090300 Rh4DG075900
rosa_wichuraiana	Rw4G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	280, 396
AfiI	CCNNNNNNNGG	1 cut(s)	356
AjiI	CACGTC	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	233, 379
AspLEI	GCGC	1 cut(s)	37
AsuII	TTCGAA	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	220, 391
BccI	CCATC	4 cut(s)	37, 98, 176, 350
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	2 cut(s)	234, 380
BlsI	GCNGC	2 cut(s)	235, 381
Bme1390I	CCNGG	1 cut(s)	339
BmgBI	CACGTC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	2 cut(s)	323, 376
Bpu10I	CCTNAGC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	129
BsaJI	CCNNGG	4 cut(s)	142, 198, 337, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse3DI	GCAATG	3 cut(s)	6, 84, 290
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	4 cut(s)	142, 198, 337, 338
BseGI	GGATG	2 cut(s)	48, 338
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	3 cut(s)	6, 84, 290
BseMII	CTCAG	2 cut(s)	52, 261
BseXI	GCAGC	2 cut(s)	220, 391
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	129
Bsp1407I	TGTACA	2 cut(s)	278, 394
Bsp143I	GATC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	51, 262
BspT104I	TTCGAA	1 cut(s)	129
BsrDI	GCAATG	3 cut(s)	6, 84, 290
BsrGI	TGTACA	2 cut(s)	278, 394
BssECI	CCNNGG	4 cut(s)	142, 198, 337, 338
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	3 cut(s)	178, 283, 410
BstAUI	TGTACA	2 cut(s)	278, 394
BstBI	TTCGAA	1 cut(s)	129
BstDEI	CTNAG	4 cut(s)	38, 270, 296, 402
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	48, 338
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 292
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	220, 391
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	142
BtrI	CACGTC	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	48, 338
BtsIMutI	CAGTG	1 cut(s)	288
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	279, 395
CviAII	CATG	3 cut(s)	61, 122, 383
CviJI	RGCY	7 cut(s)	5, 83, 88, 141, 214, 233, 319
CviKI_1	RGCY	7 cut(s)	5, 83, 88, 141, 214, 233, 319
CviQI	GTAC	2 cut(s)	279, 395
DdeI	CTNAG	4 cut(s)	38, 270, 296, 402
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	3 cut(s)	64, 125, 386
FaiI	YATR	8 cut(s)	54, 62, 123, 162, 303, 327, 377, 384
FatI	CATG	3 cut(s)	60, 121, 382
Fnu4HI	GCNGC	2 cut(s)	234, 380
FokI	GGATG	2 cut(s)	55, 345
Fsp4HI	GCNGC	2 cut(s)	234, 380
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	2 cut(s)	234, 380
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	3 cut(s)	64, 125, 386
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	2 cut(s)	266, 365
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	2 cut(s)	173, 271
Hpy188III	TCNNGA	3 cut(s)	40, 155, 362
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	3 cut(s)	178, 283, 410
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	5 cut(s)	11, 77, 236, 252, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 292
HpyF3I	CTNAG	4 cut(s)	38, 270, 296, 402
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	3 cut(s)	64, 125, 386
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	5 cut(s)	25, 324, 351, 364, 403
Lsp1109I	GCAGC	2 cut(s)	220, 391
LweI	GCATC	2 cut(s)	323, 376
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	115
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	27
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	207
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	3 cut(s)	205, 225, 297
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	210, 424
MslI	CAYNNNNRTG	1 cut(s)	29
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	147, 292
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	3 cut(s)	64, 125, 386
NspI	RCATGY	1 cut(s)	125
NspV	TTCGAA	1 cut(s)	129
PasI	CCCWGGG	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	235, 381
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	233
RsaI	GTAC	2 cut(s)	280, 396
RsaNI	GTAC	2 cut(s)	279, 395
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	210, 424
SatI	GCNGC	2 cut(s)	234, 380
Sau3AI	GATC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	4 cut(s)	118, 139, 197, 235
SfaNI	GCATC	2 cut(s)	323, 376
SfuI	TTCGAA	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	207
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	3 cut(s)	178, 283, 410
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	102, 129
TasI	AATT	1 cut(s)	207
TatI	WGTACW	2 cut(s)	278, 394
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	210, 424
Tru9I	TTAA	2 cut(s)	210, 424
TscAI	CASTG	1 cut(s)	288
TseI	GCWGC	2 cut(s)	233, 379
TspDTI	ATGAA	1 cut(s)	406
TspRI	CASTG	1 cut(s)	288
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	1 cut(s)	125
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.