Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008786

Physical Location & Seq

Genomic Coordinates Reverse (-)

1094931 .. 1096477

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0006100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGGATTGTTACCTTGCTCATTAGCGATTGGTTATTGTGGACCCTGCCTCAGGAGATCAACCACTCTGCAACAAGGACAAGACCGTTATTATCACGGATGGAAAGATCAATTTGGTTTGCTTCAGAAATGAAAGCTATAAGTGATGATTGTGAAAGATTGATATCTTTTCCTCCTGGGCATTTATACTCTAGCAAACAAGGACGGCTGAAAAGGTGGTACAATCCACAATGGTTTTTGGAGAAGATACCATTGACTCCTTACGATCCCATTGTTTTACGCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0008289 GO:0012505 GO:0016298 GO:0016787 GO:0016788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

11.27

Weight (kDa)

8.93

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06925 AT2G06925
fragaria_vesca	FvH4_4g06380
malus_domestica	MD13G1235500.v1.1 MD16G1240200.v1.1
prunus_persica	Prupe.1G066500_v2.0.a1 Prupe.1G066500_v2.0.a1 Prupe.1G066900_v2.0.a1 Prupe.1G066900_v2.0.a1
pyrus_communis	pycom13g20800 pycom16g20100
rosa_chinensis	RchiOBHm_Chr4g0398131
rosa_laevigata	RLG00000009384
rosa_multiflora	Rmu_co8126840.1_g000001 Rmu_sc0009399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343030
rosa_rugosa	Rorug04G0006100 Rorug04G0006200
rosa_samantha	Rh4AG083300 Rh4BG081000 Rh4CG090300 Rh4DG075900
rosa_wichuraiana	Rw4G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	282
AclWI	GGATC	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
AlwI	GGATC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	42
AxyI	CCTNAGG	1 cut(s)	51
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	177
BfaI	CTAG	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse21I	CCTNAGG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	52
Bsp143I	GATC	3 cut(s)	57, 107, 265
BspCNI	CTCAG	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	3 cut(s)	57, 107, 265
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	51
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	3 cut(s)	60, 110, 268
BstMBI	GATC	3 cut(s)	57, 107, 265
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstUI	CGCG	1 cut(s)	282
Bsu36I	CCTNAGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	220
CviJI	RGCY	2 cut(s)	137, 208
CviKI_1	RGCY	2 cut(s)	137, 208
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	3 cut(s)	59, 109, 267
DpnII	GATC	3 cut(s)	57, 107, 265
Eco32I	GATATC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	108
Eco81I	CCTNAGG	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	175
EcoRV	GATATC	1 cut(s)	165
FaiI	YATR	2 cut(s)	140, 187
FokI	GGATG	1 cut(s)	112
FspBI	CTAG	1 cut(s)	192
HinfI	GANTC	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4V	TGCA	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	57, 107, 265
LpnPI	CCDG	4 cut(s)	38, 59, 162, 189
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	59, 109, 267
MboI	GATC	3 cut(s)	57, 107, 265
MboII	GAAGA	1 cut(s)	256
MluCI	AATT	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	2 cut(s)	60, 183
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	282
NdeII	GATC	3 cut(s)	57, 107, 265
NlaIV	GGNNCC	1 cut(s)	44
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
Sau3AI	GATC	3 cut(s)	57, 107, 265
Sau96I	GGNCC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	177
SetI	ASST	3 cut(s)	17, 139, 218
SinI	GGWCC	1 cut(s)	42
Sse9I	AATT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	87
TasI	AATT	1 cut(s)	111
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	42
XagI	CCTNNNNNAGG	1 cut(s)	50
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.