Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008786

Physical Location & Seq

Genomic Coordinates Reverse (-)

4752642 .. 4756242

Gene Structure 3601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G066500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCCAATGCAAGAATATCTGACATCATGGGCCTCAATGGTGGTGTTATTCCTCTAGGCTTTGCTGCCTTGGTTATGTTTTCTTGCGTGGCCGATGCTTTTTCCGGCGAATATCTTTTTGGGGAGGGTGTCCGTCGAAGCCTTGCTGAGAATGACACTGCTCAGAGTAAGGATTGCAGTAGACAGTGTGAGTCAGAGTTCTGTACAGTGCCTCCATTTTTAAGATATGGAAAGTATTGTGGACTCTTGTACAGCGGATGTCCAGGGGAGGAACCCTGTGATGGCCTTGATGAATGTTGCATGAAGCATGATGCCTGCGTTCAATCTAAGAACAATGATTATCTAAGCTCAGAGTGCAGCCAACAGTTCCTAAATTGCATGGCCGAATTCAGAAACTCAAAAGGGAAAACGTTTAATGGGAACACATGTCACGTTCAAGATGTTGTTGAAGTTATAACTCTTGTCATGGAAGCTGCATTAGTTGCTGGAAGATATCTTCATAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0008289 GO:0012505 GO:0016298 GO:0016787 GO:0016788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.46

Weight (kDa)

4.91

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06925 AT2G06925
fragaria_vesca	FvH4_4g06380
malus_domestica	MD13G1235500.v1.1 MD16G1240200.v1.1
prunus_persica	Prupe.1G066500_v2.0.a1 Prupe.1G066500_v2.0.a1 Prupe.1G066900_v2.0.a1 Prupe.1G066900_v2.0.a1
pyrus_communis	pycom13g20800 pycom16g20100
rosa_chinensis	RchiOBHm_Chr4g0398131
rosa_laevigata	RLG00000009384
rosa_multiflora	Rmu_co8126840.1_g000001 Rmu_sc0009399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343030
rosa_rugosa	Rorug04G0006100 Rorug04G0006200
rosa_samantha	Rh4AG083300 Rh4BG081000 Rh4CG090300 Rh4DG075900
rosa_wichuraiana	Rw4G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
AccI	GTMKAC	1 cut(s)	181
AciI	CCGC	1 cut(s)	255
AclI	AACGTT	1 cut(s)	410
AcoI	YGGCCR	3 cut(s)	3, 90, 381
AcsI	RAATTY	1 cut(s)	386
AfaI	GTAC	2 cut(s)	205, 251
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	323, 437, 449
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	2 cut(s)	348, 473
AluI	AGCT	2 cut(s)	348, 473
AoxI	GGCC	5 cut(s)	3, 31, 90, 283, 381
ApeKI	GCWGC	3 cut(s)	65, 357, 473
ApoI	RAATTY	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	3 cut(s)	52, 369, 460
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	264
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	3 cut(s)	66, 358, 474
BlsI	GCNGC	3 cut(s)	67, 359, 475
Bme1390I	CCNGG	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	2 cut(s)	85, 301
BsaJI	CCNNGG	2 cut(s)	69, 263
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	69, 263
BseGI	GGATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	3 cut(s)	138, 176, 363
BseXI	GCAGC	3 cut(s)	52, 369, 460
BsgI	GTGCAG	1 cut(s)	376
BshFI	GGCC	5 cut(s)	5, 33, 92, 285, 383
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	281
BsnI	GGCC	5 cut(s)	5, 33, 92, 285, 383
Bsp1407I	TGTACA	2 cut(s)	203, 249
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	5 cut(s)	5, 33, 92, 285, 383
BspCNI	CTCAG	3 cut(s)	139, 175, 362
BspLI	GGNNCC	1 cut(s)	273
BsrGI	TGTACA	2 cut(s)	203, 249
BssECI	CCNNGG	2 cut(s)	69, 263
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	186, 208, 366
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstAUI	TGTACA	2 cut(s)	203, 249
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	5 cut(s)	147, 162, 327, 344, 349
BstF5I	GGATG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	2 cut(s)	354, 482
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	262
BstV1I	GCAGC	3 cut(s)	52, 369, 460
BsuRI	GGCC	5 cut(s)	5, 33, 92, 285, 383
BtsCI	GGATG	1 cut(s)	263
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	3 cut(s)	156, 191, 213
Cac8I	GCNNGC	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	204, 250
CviAII	CATG	6 cut(s)	28, 301, 308, 379, 426, 466
CviQI	GTAC	2 cut(s)	204, 250
DdeI	CTNAG	5 cut(s)	147, 162, 327, 344, 349
EaeI	YGGCCR	3 cut(s)	3, 90, 381
Eco130I	CCWWGG	1 cut(s)	69
Eco32I	GATATC	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	6 cut(s)	31, 304, 311, 382, 429, 469
FatI	CATG	6 cut(s)	27, 300, 307, 378, 425, 465
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	3 cut(s)	66, 358, 474
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	3 cut(s)	66, 358, 474
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	3 cut(s)	66, 358, 474
HaeIII	GGCC	5 cut(s)	5, 33, 92, 285, 383
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	6 cut(s)	31, 304, 311, 382, 429, 469
HinfI	GANTC	2 cut(s)	191, 243
HpaII	CCGG	1 cut(s)	105
Hpy166II	GTNNAC	2 cut(s)	182, 242
Hpy188I	TCNGA	5 cut(s)	22, 165, 196, 352, 392
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	2 cut(s)	182, 242
Hpy99I	CGWCG	1 cut(s)	138
HpyCH4III	ACNGT	3 cut(s)	186, 208, 366
HpyCH4IV	ACGT	2 cut(s)	410, 432
HpyCH4V	TGCA	6 cut(s)	11, 177, 300, 357, 378, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	354, 482
HpyF3I	CTNAG	5 cut(s)	147, 162, 327, 344, 349
HpySE526I	ACGT	2 cut(s)	410, 432
Hsp92II	CATG	6 cut(s)	31, 304, 311, 382, 429, 469
LpnPI	CCDG	6 cut(s)	118, 249, 276, 289, 328, 471
Lsp1109I	GCAGC	3 cut(s)	52, 369, 460
LweI	GCATC	2 cut(s)	85, 301
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	2 cut(s)	410, 432
MaeIII	GTNAC	1 cut(s)	428
MboII	GAAGA	2 cut(s)	488, 501
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	373, 386
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	200, 237
MnlI	CCTC	5 cut(s)	44, 63, 118, 222, 262
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	221, 414
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	354, 482
NlaIII	CATG	6 cut(s)	31, 304, 311, 382, 429, 469
NlaIV	GGNNCC	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	428
NspI	RCATGY	1 cut(s)	429
PciI	ACATGT	1 cut(s)	425
PkrI	GCNGC	3 cut(s)	67, 359, 475
PleI	GAGTC	2 cut(s)	199, 237
PpsI	GAGTC	2 cut(s)	199, 237
PscI	ACATGT	1 cut(s)	425
PsiI	TTATAA	1 cut(s)	455
Psp1406I	AACGTT	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	31
RsaI	GTAC	2 cut(s)	205, 251
RsaNI	GTAC	2 cut(s)	204, 250
SaqAI	TTAA	2 cut(s)	221, 414
SatI	GCNGC	3 cut(s)	66, 358, 474
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	2 cut(s)	200, 237
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	4 cut(s)	350, 413, 435, 475
SfaNI	GCATC	2 cut(s)	85, 301
Sse9I	AATT	2 cut(s)	373, 386
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	186, 208, 366
TaiI	ACGT	2 cut(s)	413, 435
TaqI	TCGA	1 cut(s)	136
TasI	AATT	2 cut(s)	373, 386
TatI	WGTACW	2 cut(s)	203, 249
Tru1I	TTAA	2 cut(s)	221, 414
Tru9I	TTAA	2 cut(s)	221, 414
TscAI	CASTG	3 cut(s)	163, 191, 213
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	3 cut(s)	65, 357, 473
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	3 cut(s)	306, 317, 488
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	3 cut(s)	163, 191, 213
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	1 cut(s)	429
XmiI	GTMKAC	1 cut(s)	181
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.