Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008786

Physical Location & Seq

Genomic Coordinates Reverse (-)

12216977 .. 12222370

Gene Structure 5394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGTGCTCAGGAAGGGTGTGTATAATGTCATGCTTCTTGGGTTTGCAATGGCTTGGCTCTCTTGCGTGGTCGATGGTGCTTCACGTCGGCATGTTTTTGAAGTAGGTAGCCGTGGTCGCCTTCCCGATCATAACACCATCAGAACAGTTTTGGAAGTTGCCACCTCCAAGGGAGAAATTAAGCCTCTCAACGAGACAGAAGCTGCACAGAGTAAAGATTGCAGTAGAAAGTGCGAGTCTGAGTTCTGTACAGTGCCTCCATTGCTAAGATATGGAAAGTACTGTGGGCTTTTGTATAGTGGATGCCCTGGGGAGAAACCCTGTGATGGTCTGGATTCTTGTTGTATGCAGCATGATGCCTGTGTACAATCTAAGAACAATGACTATCTGAGCTCAGAGTGCAGCCAAAATTTCCTAAAATGCATGTCACAATTCAAAAACGCAAAAGGACGGACCTTCAAAGGGAGCAAATGCAAAGTTGAGGATGTTGTGGAAGTTATCACAATTGTGATGGAGGCTGCATTATTTGCTGGAAGATATCTCCACAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0008289 GO:0012505 GO:0016298 GO:0016787 GO:0016788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko00590 ko00591 ko00592 ko01100 ko01110 ko04014 ko04270 ko04972 ko04975 map00564 map00565 map00590 map00591 map00592 map01100 map01110 map04014 map04270 map04972 map04975

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.41

Weight (kDa)

8.54

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06925 AT2G06925
fragaria_vesca	FvH4_4g06380
malus_domestica	MD13G1235500.v1.1 MD16G1240200.v1.1
prunus_persica	Prupe.1G066500_v2.0.a1 Prupe.1G066500_v2.0.a1 Prupe.1G066900_v2.0.a1 Prupe.1G066900_v2.0.a1
pyrus_communis	pycom13g20800 pycom16g20100
rosa_chinensis	RchiOBHm_Chr4g0398131
rosa_laevigata	RLG00000009384
rosa_multiflora	Rmu_co8126840.1_g000001 Rmu_sc0009399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343030
rosa_rugosa	Rorug04G0006100 Rorug04G0006200
rosa_samantha	Rh4AG083300 Rh4BG081000 Rh4CG090300 Rh4DG075900
rosa_wichuraiana	Rw4G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	409
AfaI	GTAC	3 cut(s)	250, 281, 366
AfiI	CCNNNNNNNGG	2 cut(s)	326, 462
AgsI	TTSAA	3 cut(s)	101, 436, 460
AjiI	CACGTC	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	307
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	2 cut(s)	203, 393
AluI	AGCT	2 cut(s)	203, 393
Alw21I	GWGCWC	2 cut(s)	9, 395
Alw26I	GTCTC	1 cut(s)	188
AlwNI	CAGNNNCTG	1 cut(s)	203
ApeKI	GCWGC	4 cut(s)	203, 349, 402, 518
ApoI	RAATTY	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	453
AvaII	GGWCC	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	395
Bbv12I	GWGCWC	2 cut(s)	9, 395
BbvI	GCAGC	4 cut(s)	190, 361, 414, 505
BccI	CCATC	4 cut(s)	68, 146, 320, 505
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	188
BisI	GCNGC	4 cut(s)	204, 350, 403, 519
BlsI	GCNGC	4 cut(s)	205, 351, 404, 520
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	453
BmgBI	CACGTC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	453
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	2 cut(s)	293, 346
Bpu10I	CCTNAGC	1 cut(s)	8
BsaJI	CCNNGG	4 cut(s)	112, 168, 307, 308
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 462
Bse3DI	GCAATG	2 cut(s)	54, 260
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	4 cut(s)	112, 168, 307, 308
BseGI	GGATG	2 cut(s)	308, 490
BseLI	CCNNNNNNNGG	2 cut(s)	326, 462
BseMI	GCAATG	2 cut(s)	54, 260
BseMII	CTCAG	4 cut(s)	22, 231, 380, 408
BseXI	GCAGC	4 cut(s)	190, 361, 414, 505
BsgI	GTGCAG	2 cut(s)	189, 421
BsiHKAI	GWGCWC	2 cut(s)	9, 395
BslI	CCNNNNNNNGG	2 cut(s)	326, 462
BsmAI	GTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	9, 395
Bsp1407I	TGTACA	2 cut(s)	248, 364
Bsp143I	GATC	1 cut(s)	127
BspCNI	CTCAG	4 cut(s)	21, 232, 381, 407
BsrDI	GCAATG	2 cut(s)	54, 260
BsrGI	TGTACA	2 cut(s)	248, 364
BssECI	CCNNGG	4 cut(s)	112, 168, 307, 308
BssMI	GATC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	148, 253, 284
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstAUI	TGTACA	2 cut(s)	248, 364
BstDEI	CTNAG	6 cut(s)	8, 240, 266, 372, 389, 394
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	308, 490
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 262, 399, 527
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	2 cut(s)	95, 427
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	4 cut(s)	190, 361, 414, 505
BtgI	CCRYGG	1 cut(s)	112
BtrI	CACGTC	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	308, 490
BtsIMutI	CAGTG	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	453
Csp6I	GTAC	3 cut(s)	249, 280, 365
CspCI	CAANNNNNGTGG	1 cut(s)	533
CviAII	CATG	4 cut(s)	31, 92, 353, 424
CviJI	RGCY	9 cut(s)	53, 58, 111, 184, 203, 289, 393, 405, 518
CviKI_1	RGCY	9 cut(s)	53, 58, 111, 184, 203, 289, 393, 405, 518
CviQI	GTAC	3 cut(s)	249, 280, 365
DdeI	CTNAG	6 cut(s)	8, 240, 266, 372, 389, 394
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Ecl136II	GAGCTC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	395
Eco32I	GATATC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	453
Eco53kI	GAGCTC	1 cut(s)	393
EcoICRI	GAGCTC	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	307
EcoRV	GATATC	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	4 cut(s)	34, 95, 356, 427
FaiI	YATR	9 cut(s)	24, 32, 93, 132, 273, 297, 347, 354, 425
FatI	CATG	4 cut(s)	30, 91, 352, 423
Fnu4HI	GCNGC	4 cut(s)	204, 350, 403, 519
FokI	GGATG	2 cut(s)	315, 497
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	4 cut(s)	204, 350, 403, 519
GluI	GCNGC	4 cut(s)	204, 350, 403, 519
Hin1II	CATG	4 cut(s)	34, 95, 356, 427
HinfI	GANTC	2 cut(s)	236, 335
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	4 cut(s)	143, 241, 390, 397
Hpy188III	TCNNGA	3 cut(s)	10, 125, 332
Hpy8I	GTNNAC	1 cut(s)	365
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	3 cut(s)	7, 131, 466
HpyCH4III	ACNGT	3 cut(s)	148, 253, 284
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	8 cut(s)	47, 206, 222, 349, 402, 423, 474, 521
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 262, 399, 527
HpyF3I	CTNAG	6 cut(s)	8, 240, 266, 372, 389, 394
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	4 cut(s)	34, 95, 356, 427
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	465
LpnPI	CCDG	6 cut(s)	294, 317, 321, 334, 373, 516
Lsp1109I	GCAGC	4 cut(s)	190, 361, 414, 505
LweI	GCATC	2 cut(s)	293, 346
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	1 cut(s)	546
MfeI	CAATTG	1 cut(s)	504
MhlI	GDGCHC	2 cut(s)	9, 395
MluCI	AATT	4 cut(s)	177, 409, 431, 504
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	5 cut(s)	175, 195, 267, 475, 508
Mph1103I	ATGCAT	1 cut(s)	425
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	506
MspR9I	CCNGG	1 cut(s)	309
MunI	CAATTG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	4 cut(s)	117, 262, 399, 527
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	4 cut(s)	34, 95, 356, 427
NmuCI	GTSAC	1 cut(s)	426
NsiI	ATGCAT	1 cut(s)	425
NspI	RCATGY	2 cut(s)	95, 427
OliI	CACNNNNGTG	1 cut(s)	506
PasI	CCCWGGG	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	4 cut(s)	205, 351, 404, 520
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspPI	GGNCC	1 cut(s)	453
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	3 cut(s)	250, 281, 366
RsaNI	GTAC	3 cut(s)	249, 280, 365
RseI	CAYNNNNRTG	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	4 cut(s)	204, 350, 403, 519
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	453
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	2 cut(s)	9, 395
SetI	ASST	7 cut(s)	88, 109, 167, 205, 395, 458, 553
SfaNI	GCATC	2 cut(s)	293, 346
SinI	GGWCC	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	506
Sse9I	AATT	4 cut(s)	177, 409, 431, 504
SstI	GAGCTC	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	148, 253, 284
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	72
TasI	AATT	4 cut(s)	177, 409, 431, 504
TatI	WGTACW	3 cut(s)	248, 279, 364
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	4 cut(s)	203, 349, 402, 518
Tsp45I	GTSAC	1 cut(s)	426
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	453
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	2 cut(s)	95, 427
ZrmI	AGTACT	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.