Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0017379

Physical Location & Seq

Genomic Coordinates Reverse (-)

7030898 .. 7031346

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1065700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCTTTCAATCATCGGCTACATGTCACCCGAGTATGCAAGATATGGTAATTTCTCTGAGAAACTGGATGTATTTAGTTTCAGAGTGTTGTTGCTAGAGATTATAAGTGGAAAGAAGAATGTTGCTTTTTATAGCTTTGAACATTCACCAACTCTTGCTGGATGGGCATGGGAGTTGTGGAAAGAAGCACGAGGAATGGAGGTGATTGATGAATCAGTCAGGGAAACATGCCAGCCGGATGAAGCTTTGAGGTGCATCCATGTAGGGTTTTTGTGTGTTCAAGAAGCTCCGGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

100

Amino Acids

11.37

Weight (kDa)

4.83

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	5 - 40	6.7e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017379)

Species	Orthologous Gene IDs
malus_domestica	MD14G1065700.v1.1 MD17G1084200.v1.1 MD17G1088800.v1.1
prunus_persica	Prupe.3G225600_v2.0.a1
pyrus_communis	pycom17g08510
rosa_laevigata	RLG00000002293
rosa_multiflora	Rmu_sc0000399.1_g000003 Rmu_sc0000955.1_g000016 Rmu_sc0004576.1_g000020
rosa_roxburghii	Rroxscaffold_2G00089350
rosa_rugosa	Rorug02G0485900
rosa_samantha	Rh1BG030900 Rh6BG126100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	9, 140, 281
AluBI	AGCT	3 cut(s)	135, 245, 287
AluI	AGCT	3 cut(s)	135, 245, 287
Ama87I	CYCGRG	1 cut(s)	29
AsuHPI	GGTGA	3 cut(s)	18, 138, 214
AvaI	CYCGRG	1 cut(s)	29
BauI	CACGAG	1 cut(s)	189
BccI	CCATC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	69
BseGI	GGATG	4 cut(s)	73, 167, 244, 255
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	236, 290
BsoBI	CYCGRG	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	4 cut(s)	73, 167, 244, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNSI	RCATGY	2 cut(s)	25, 231
BtsCI	GGATG	4 cut(s)	73, 167, 244, 255
Cac8I	GCNNGC	1 cut(s)	233
CviAII	CATG	4 cut(s)	22, 168, 228, 260
CviJI	RGCY	5 cut(s)	18, 135, 235, 245, 287
CviKI_1	RGCY	5 cut(s)	18, 135, 235, 245, 287
DdeI	CTNAG	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	29
FaeI	CATG	4 cut(s)	25, 171, 231, 263
FaiI	YATR	8 cut(s)	23, 36, 45, 104, 132, 169, 229, 261
FatI	CATG	4 cut(s)	21, 167, 227, 259
FokI	GGATG	4 cut(s)	80, 174, 242, 251
FspBI	CTAG	1 cut(s)	95
HapII	CCGG	2 cut(s)	236, 290
Hin1II	CATG	4 cut(s)	25, 171, 231, 263
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	2 cut(s)	236, 290
HphI	GGTGA	3 cut(s)	18, 138, 214
Hpy188I	TCNGA	2 cut(s)	58, 83
Hpy188III	TCNNGA	1 cut(s)	281
HpyCH4V	TGCA	2 cut(s)	38, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	25, 171, 231, 263
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	5 cut(s)	50, 144, 205, 245, 249
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	24
MboII	GAAGA	1 cut(s)	127
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	3 cut(s)	185, 193, 243
MspI	CCGG	2 cut(s)	236, 290
MwoI	GCNNNNNNNGC	1 cut(s)	164
NlaIII	CATG	4 cut(s)	25, 171, 231, 263
NmuCI	GTSAC	1 cut(s)	24
NspI	RCATGY	2 cut(s)	25, 231
PciI	ACATGT	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	21
PsiI	TTATAA	1 cut(s)	104
SetI	ASST	5 cut(s)	137, 204, 247, 254, 289
SfaNI	GCATC	1 cut(s)	264
Sse9I	AATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	95
TasI	AATT	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	212
TseFI	GTSAC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	2 cut(s)	225, 255
XceI	RCATGY	2 cut(s)	25, 231
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.