Rmu_sc0004576.1_g000020

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004576.1
OG0017379
Physical Location & Seq
Forward (+)
60688 .. 61309
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004576.1_g000020.1.cds

Sequence Viewer

Length: 456 bp
atgtctccggagtatgccatgaaaggcattgtgtccattaaaactgatattttcagctttggagtcctactgctggaaattgtaagtgggaagaagaataacagtaactaccattcagagtaccaactcaacctcattggatatgcatggcagctttggaatgaagatagaggatctgagctagcagacccgggattaggtgaatcatgccccactactgaagttctaagatgcattcatgtgggtcttttgtgtgtacaagaccatgcagcagacaggccaacaatgccggatgttgtttccatgcttttaaatcaaagcattctattacctcctccaaaacaaccagcattttttataaatacagttgagaaagagtttataaaggcatcaggagaggagtccgaaatttgttccacaaatgatgtaactatatcagtaatggaagcaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

151

Amino Acids

16.73

Weight (kDa)

4.69

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017379)

Species Orthologous Gene IDs
malus_domestica MD14G1065700.v1.1 MD17G1084200.v1.1 MD17G1088800.v1.1
prunus_persica Prupe.3G225600_v2.0.a1
pyrus_communis pycom17g08510
rosa_laevigata RLG00000002293
rosa_multiflora Rmu_sc0000399.1_g000003 Rmu_sc0000955.1_g000016 Rmu_sc0004576.1_g000020
rosa_roxburghii Rroxscaffold_2G00089350
rosa_rugosa Rorug02G0485900
rosa_samantha Rh1BG030900 Rh6BG126100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 359, 383
AccIII TCCGGA 1 cut(s) 7
AclWI GGATC 1 cut(s) 181
AcsI RAATTY 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 2 cut(s) 122, 258
AfiI CCNNNNNNNGG 2 cut(s) 73, 197
AluBI AGCT 3 cut(s) 57, 154, 181
AluI AGCT 3 cut(s) 57, 154, 181
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 190
Aor13HI TCCGGA 1 cut(s) 7
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 151, 269
ApoI RAATTY 1 cut(s) 408
AsuC2I CCSGG 2 cut(s) 191, 192
AsuHPI GGTGA 1 cut(s) 212
AsuNHI GCTAGC 1 cut(s) 181
AvaI CYCGRG 1 cut(s) 190
BbvI GCAGC 2 cut(s) 163, 281
BcnI CCSGG 2 cut(s) 191, 192
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 182
BisI GCNGC 2 cut(s) 152, 270
BlsI GCNGC 2 cut(s) 153, 271
Bme1390I CCNGG 2 cut(s) 191, 192
BmeT110I CYCGRG 1 cut(s) 190
BmrFI CCNGG 2 cut(s) 191, 192
BmsI GCATC 2 cut(s) 221, 398
BmtI GCTAGC 1 cut(s) 185
BpuMI CCSGG 2 cut(s) 191, 192
BsaJI CCNNGG 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 197
BseAI TCCGGA 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 2 cut(s) 73, 197
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 2 cut(s) 324, 413
BseXI GCAGC 2 cut(s) 163, 281
BshFI GGCC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 3 cut(s) 8, 191, 290
BslI CCNNNNNNNGG 2 cut(s) 73, 197
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 2 cut(s) 234, 321
BsnI GGCC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 190
Bsp13I TCCGGA 1 cut(s) 7
Bsp1407I TGTACA 1 cut(s) 256
Bsp143I GATC 1 cut(s) 173
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 169
BspEI TCCGGA 1 cut(s) 7
BspOI GCTAGC 1 cut(s) 185
BspPI GGATC 1 cut(s) 181
BsrGI TGTACA 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 104, 367
BstAUI TGTACA 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 177, 227
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 1 cut(s) 176
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstSCI CCNGG 2 cut(s) 189, 190
BstV1I GCAGC 2 cut(s) 163, 281
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 183
Cfr9I CCCGGG 1 cut(s) 190
Csp6I GTAC 2 cut(s) 121, 257
CviAII CATG 6 cut(s) 19, 147, 207, 239, 266, 304
CviJI RGCY 4 cut(s) 57, 154, 181, 280
CviKI_1 RGCY 4 cut(s) 57, 154, 181, 280
CviQI GTAC 2 cut(s) 121, 257
DdeI CTNAG 2 cut(s) 177, 227
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
DraI TTTAAA 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 190
EcoT22I ATGCAT 2 cut(s) 148, 236
FaeI CATG 6 cut(s) 22, 150, 210, 242, 269, 307
FatI CATG 6 cut(s) 18, 146, 206, 238, 265, 303
Fnu4HI GCNGC 2 cut(s) 152, 270
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 152, 270
FspBI CTAG 1 cut(s) 182
GluI GCNGC 2 cut(s) 152, 270
HaeIII GGCC 1 cut(s) 280
HapII CCGG 3 cut(s) 8, 191, 290
Hin1II CATG 6 cut(s) 22, 150, 210, 242, 269, 307
HinfI GANTC 3 cut(s) 63, 203, 401
HpaII CCGG 3 cut(s) 8, 191, 290
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 3 cut(s) 118, 178, 406
Hpy188III TCNNGA 2 cut(s) 8, 393
Hpy8I GTNNAC 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 104, 367
HpyCH4V TGCA 3 cut(s) 146, 234, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 2 cut(s) 177, 227
Hsp92II CATG 6 cut(s) 22, 150, 210, 242, 269, 307
Kpn2I TCCGGA 1 cut(s) 7
Kzo9I GATC 1 cut(s) 173
LpnPI CCDG 7 cut(s) 21, 59, 204, 262, 303, 360, 378
Lsp1109I GCAGC 2 cut(s) 163, 281
LweI GCATC 2 cut(s) 221, 398
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 2 cut(s) 104, 427
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MboII GAAGA 3 cut(s) 103, 106, 176
MflI RGATCY 1 cut(s) 173
MluCI AATT 2 cut(s) 78, 408
MlyI GAGTC 2 cut(s) 72, 410
MnlI CCTC 5 cut(s) 143, 164, 342, 345, 391
Mph1103I ATGCAT 2 cut(s) 148, 236
MroI TCCGGA 1 cut(s) 7
MseI TTAA 2 cut(s) 39, 311
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 3 cut(s) 8, 191, 290
MspR9I CCNGG 2 cut(s) 191, 192
Mva1269I GAATGC 2 cut(s) 234, 321
MwoI GCNNNNNNNGC 1 cut(s) 286
NciI CCSGG 2 cut(s) 191, 192
NdeII GATC 1 cut(s) 173
NheI GCTAGC 1 cut(s) 181
NlaIII CATG 6 cut(s) 22, 150, 210, 242, 269, 307
NsiI ATGCAT 2 cut(s) 148, 236
PctI GAATGC 2 cut(s) 234, 321
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 153, 271
PleI GAGTC 2 cut(s) 71, 409
PpsI GAGTC 2 cut(s) 71, 409
PsiI TTATAA 2 cut(s) 359, 383
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 2 cut(s) 122, 258
RsaNI GTAC 2 cut(s) 121, 257
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 2 cut(s) 39, 311
SatI GCNGC 2 cut(s) 152, 270
Sau3AI GATC 1 cut(s) 173
SchI GAGTC 2 cut(s) 72, 410
ScrFI CCNGG 2 cut(s) 191, 192
SetI ASST 6 cut(s) 59, 135, 156, 183, 202, 334
SfaNI GCATC 2 cut(s) 221, 398
SmaI CCCGGG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 2 cut(s) 78, 408
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 189, 190
TaaI ACNGT 2 cut(s) 104, 367
TasI AATT 2 cut(s) 78, 408
TatI WGTACW 1 cut(s) 256
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 2 cut(s) 39, 311
Tru9I TTAA 2 cut(s) 39, 311
TseI GCWGC 2 cut(s) 151, 269
TspDTI ATGAA 3 cut(s) 35, 177, 227
TspMI CCCGGG 1 cut(s) 190
XapI RAATTY 1 cut(s) 408
XmaI CCCGGG 1 cut(s) 190
XspI CTAG 1 cut(s) 182
Zsp2I ATGCAT 2 cut(s) 148, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.