Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0017379

Physical Location & Seq

Genomic Coordinates Reverse (-)

22497015 .. 22498248

Gene Structure 1234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G225600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGAGGTGATTGATGAATCAGTAAGGGAAACATGCTCCCTTCATGAAGCCCTGAGGTGTATCCAAGTAGGGCTTTTGTGTGTTCAAGAAGCTCCAGCTGATCGCCCAACAATGTCTTCTGTAATTCTTATGCTGGCCAATGAAGCTACATCTCTTCCTCCCACCAAAGAACCTGCCTTTTCAACAAATAGGAATTCTAGTGCTGCTTCTGCTTCTTTTTTTTCCAACAATGCAGTCACCATTACTATGCCACAAGCTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

88

Amino Acids

9.36

Weight (kDa)

4.91

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017379)

Species	Orthologous Gene IDs
malus_domestica	MD14G1065700.v1.1 MD17G1084200.v1.1 MD17G1088800.v1.1
prunus_persica	Prupe.3G225600_v2.0.a1
pyrus_communis	pycom17g08510
rosa_laevigata	RLG00000002293
rosa_multiflora	Rmu_sc0000399.1_g000003 Rmu_sc0000955.1_g000016 Rmu_sc0004576.1_g000020
rosa_roxburghii	Rroxscaffold_2G00089350
rosa_rugosa	Rorug02G0485900
rosa_samantha	Rh1BG030900 Rh6BG126100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	86, 183
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	4 cut(s)	92, 98, 146, 257
AluI	AGCT	4 cut(s)	92, 98, 146, 257
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	19, 229
AxyI	CCTNAGG	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	190
BciVI	GTATCC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	181
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	78
Bse21I	CCTNAGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	181
BssMI	GATC	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	53
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 209
BstNSI	RCATGY	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	108
Bsu36I	CCTNAGG	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	137
BveI	ACCTGC	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	43
CviAII	CATG	2 cut(s)	33, 44
CviJI	RGCY	7 cut(s)	50, 73, 92, 98, 137, 146, 257
CviKI_1	RGCY	7 cut(s)	50, 73, 92, 98, 137, 146, 257
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco81I	CCTNAGG	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	193
FaeI	CATG	2 cut(s)	36, 47
FaiI	YATR	4 cut(s)	34, 45, 131, 248
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FatI	CATG	2 cut(s)	32, 43
Fnu4HI	GCNGC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	36, 47
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	2 cut(s)	19, 229
Hpy188III	TCNNGA	2 cut(s)	44, 86
HpyAV	CCTTC	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 209
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	36, 47
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	2 cut(s)	41, 97
LpnPI	CCDG	4 cut(s)	65, 108, 119, 186
Lsp1109I	GCAGC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	108, 146
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	2 cut(s)	123, 193
MluNI	TGGCCA	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	2 cut(s)	48, 168
Mox20I	TGGCCA	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	245
Msp20I	TGGCCA	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	143, 209
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	36, 47
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	36
PagI	TCATGA	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	245
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	100
SetI	ASST	7 cut(s)	9, 59, 94, 100, 148, 175, 259
SgeI	CNNG	9 cut(s)	45, 56, 64, 77, 98, 107, 146, 185, 210
SmiMI	CAYNNNNRTG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	123, 193
SspMI	CTAG	1 cut(s)	198
TaqI	TCGA	1 cut(s)	259
TasI	AATT	2 cut(s)	123, 193
TfiI	GAWTC	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	4 cut(s)	30, 32, 60, 156
XapI	RAATTY	1 cut(s)	193
XceI	RCATGY	1 cut(s)	36
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.