Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000955.1

Orthogroup ID

OG0017379

Physical Location & Seq

Genomic Coordinates Reverse (-)

53427 .. 54357

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000955.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgtcacctgaatatgcaaagtatggtcatttctttgagaaatcagatgtatttagctttggagtgctgttgttggagattataagtggaaagaggaatgctgccttctatcgttttgaacatccattaactcttgcgggatgggcttggaaactatggaaagaaggcagaggaatgaaggtgattgatgcctatgtgagaaaagaatgtccatttgatgaagctttaaggtgcgtgccagcaccgcggggtccagtcgttgggggcgttacccttgcttcgctggaagtaacagtggcggttgtgctcgcagtcggctcctggggagactgggactggaattacggtcgccgggttgatctggtgaggctgacagtcggctcgcgaggagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

131

Amino Acids

14.72

Weight (kDa)

8.6

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017379)

Species	Orthologous Gene IDs
malus_domestica	MD14G1065700.v1.1 MD17G1084200.v1.1 MD17G1088800.v1.1
prunus_persica	Prupe.3G225600_v2.0.a1
pyrus_communis	pycom17g08510
rosa_laevigata	RLG00000002293
rosa_multiflora	Rmu_sc0000399.1_g000003 Rmu_sc0000955.1_g000016 Rmu_sc0004576.1_g000020
rosa_roxburghii	Rroxscaffold_2G00089350
rosa_rugosa	Rorug02G0485900
rosa_samantha	Rh1BG030900 Rh6BG126100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccII	CGCG	2 cut(s)	247, 385
AciI	CCGC	4 cut(s)	137, 245, 247, 299
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	57, 224
AluI	AGCT	2 cut(s)	57, 224
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	193, 376
AvaII	GGWCC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	321
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	322, 353
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	252, 319
BmrFI	CCNGG	2 cut(s)	322, 353
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	340
BpuMI	CCSGG	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	245, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	3 cut(s)	254, 335, 341
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	245, 321
BseGI	GGATG	2 cut(s)	121, 146
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseNI	ACTGG	3 cut(s)	254, 335, 341
BseXI	GCAGC	1 cut(s)	88
Bsh1236I	CGCG	2 cut(s)	247, 385
Bsh1285I	CGRYCG	1 cut(s)	349
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	358
Bsp68I	TCGCGA	1 cut(s)	385
BspACI	CCGC	4 cut(s)	137, 245, 247, 299
BspFNI	CGCG	2 cut(s)	247, 385
BspLI	GGNNCC	2 cut(s)	252, 319
BsrI	ACTGG	3 cut(s)	254, 335, 341
BssECI	CCNNGG	2 cut(s)	245, 321
BssMI	GATC	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	3 cut(s)	295, 347, 376
BstC8I	GCNNGC	4 cut(s)	236, 240, 309, 383
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	121, 146
BstFNI	CGCG	2 cut(s)	247, 385
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	358
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 244
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	320, 351
BstUI	CGCG	2 cut(s)	247, 385
BstV1I	GCAGC	1 cut(s)	88
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	121, 146
BtsIMutI	CAGTG	1 cut(s)	300
BtuMI	TCGCGA	1 cut(s)	385
Cac8I	GCNNGC	4 cut(s)	236, 240, 309, 383
Cfr13I	GGNCC	1 cut(s)	251
Cfr42I	CCGCGG	1 cut(s)	248
CviJI	RGCY	6 cut(s)	57, 146, 224, 318, 370, 381
CviKI_1	RGCY	6 cut(s)	57, 146, 224, 318, 370, 381
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	320
FaiI	YATR	5 cut(s)	15, 24, 83, 157, 195
FaqI	GGGAC	1 cut(s)	347
FauI	CCCGC	2 cut(s)	130, 240
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	2 cut(s)	108, 153
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
HapII	CCGG	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	222
HpaII	CCGG	1 cut(s)	352
HphI	GGTGA	2 cut(s)	193, 376
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	384
HpyAV	CCTTC	3 cut(s)	115, 158, 172
HpyCH4III	ACNGT	3 cut(s)	295, 347, 376
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 244
KspI	CCGCGG	1 cut(s)	248
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	178
MaeIII	GTNAC	3 cut(s)	3, 268, 289
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	87, 164, 360, 380
MseI	TTAA	2 cut(s)	128, 227
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	1 cut(s)	352
MspR9I	CCNGG	2 cut(s)	322, 353
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	2 cut(s)	247, 385
MwoI	GCNNNNNNNGC	2 cut(s)	143, 244
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	1 cut(s)	358
NlaIV	GGNNCC	2 cut(s)	252, 319
NmuCI	GTSAC	1 cut(s)	3
NruI	TCGCGA	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PctI	GAATGC	1 cut(s)	103
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	103
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	2 cut(s)	252, 319
PspPI	GGNCC	1 cut(s)	251
RruI	TCGCGA	1 cut(s)	385
SacII	CCGCGG	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	128, 227
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	322, 353
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	5 cut(s)	10, 59, 183, 226, 233
SfaNI	GCATC	1 cut(s)	178
Sfr303I	CCGCGG	1 cut(s)	248
SgrBI	CCGCGG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	251
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	4 cut(s)	137, 245, 247, 299
StyD4I	CCNGG	2 cut(s)	320, 351
TaaI	ACNGT	3 cut(s)	295, 347, 376
TasI	AATT	1 cut(s)	340
Tru1I	TTAA	2 cut(s)	128, 227
Tru9I	TTAA	2 cut(s)	128, 227
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	191, 234
TspRI	CASTG	1 cut(s)	300
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.