Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017379

Physical Location & Seq

Genomic Coordinates Reverse (-)

31757762 .. 31758360

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAATTCTTGCAGTGGCTACATGTCACCTGAATATGCACGATATGGCCATTTCTCGGAAAAATTGGATGTGTTTAGCTTTGGAGTCTTGTTGTTAGAGATTATAAGTGGAAGAAGGAATGGTTCTTTTTATCATAATGAACATTCTGTAGAAACGCTTGCTGGGTGGGCATGGGAATTATGGAAAGACGGAAGAGGAATGGAGGTAGTTGATGCATCAGTACTGGAAACATGCCAACCTAACGAAGCTTTAAGGTGTATCCATATAGGCTTTTTGTGTGTTCAAGAAGCTCCAGATGATCGACCAACAATGTCTTCTGTAATTGATATGTTGCAAGGCAACGAAGATACATCCCTTCCACCATCCAAAGAACCTGCATTTTCAACACATAAGAAGTCCAATTATGTTGTTTCTTCTTCTCAAGCATTTACCATATTTTCCAACAATGCAGTCACCATTAGTATCCCAGAAGGTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

160

Amino Acids

17.7

Weight (kDa)

5.01

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	7 - 110	3.3e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017379)

Species	Orthologous Gene IDs
malus_domestica	MD14G1065700.v1.1 MD17G1084200.v1.1 MD17G1088800.v1.1
prunus_persica	Prupe.3G225600_v2.0.a1
pyrus_communis	pycom17g08510
rosa_laevigata	RLG00000002293
rosa_multiflora	Rmu_sc0000399.1_g000003 Rmu_sc0000955.1_g000016 Rmu_sc0004576.1_g000020
rosa_roxburghii	Rroxscaffold_2G00089350
rosa_rugosa	Rorug02G0485900
rosa_samantha	Rh1BG030900 Rh6BG126100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	382
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	284, 384
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	3 cut(s)	78, 248, 290
AluI	AGCT	3 cut(s)	78, 248, 290
AoxI	GGCC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	18, 445
BalI	TGGCCA	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	306
BccI	CCATC	1 cut(s)	370
BciVI	GTATCC	2 cut(s)	269, 473
BfmI	CTRYAG	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	382
BfuI	GTATCC	2 cut(s)	269, 473
BmcAI	AGTACT	1 cut(s)	222
BmsI	GCATC	2 cut(s)	202, 224
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	228
BseGI	GGATG	3 cut(s)	73, 350, 362
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	228
BseYI	CCCAGC	1 cut(s)	161
BshFI	GGCC	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	55
BsnI	GGCC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	298
BspANI	GGCC	1 cut(s)	48
BspMI	ACCTGC	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	159
BstF5I	GGATG	3 cut(s)	73, 350, 362
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNSI	RCATGY	2 cut(s)	25, 234
BstSFI	CTRYAG	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	306
BsuI	GTATCC	2 cut(s)	269, 473
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	73, 350, 362
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	3 cut(s)	22, 171, 231
CviJI	RGCY	6 cut(s)	18, 48, 78, 248, 270, 290
CviKI_1	RGCY	6 cut(s)	18, 48, 78, 248, 270, 290
CviQI	GTAC	1 cut(s)	221
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	4
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	3 cut(s)	25, 174, 234
FatI	CATG	3 cut(s)	21, 170, 230
FokI	GGATG	3 cut(s)	80, 337, 349
GsaI	CCCAGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	48
Hin1II	CATG	3 cut(s)	25, 174, 234
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	1 cut(s)	84
HphI	GGTGA	2 cut(s)	18, 445
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	284, 293
HpyAV	CCTTC	3 cut(s)	108, 365, 464
HpyCH4V	TGCA	6 cut(s)	12, 38, 215, 334, 377, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
Hsp92II	CATG	3 cut(s)	25, 174, 234
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	5 cut(s)	42, 147, 209, 306, 387
LweI	GCATC	2 cut(s)	202, 224
MaeIII	GTNAC	2 cut(s)	24, 451
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	6 cut(s)	123, 204, 306, 356, 405, 408
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	5 cut(s)	4, 62, 176, 321, 400
MluNI	TGGCCA	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	2 cut(s)	188, 196
Mox20I	TGGCCA	1 cut(s)	48
Mph1103I	ATGCAT	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	25, 174, 234
NmuCI	GTSAC	2 cut(s)	24, 451
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	2 cut(s)	25, 234
PciI	ACATGT	1 cut(s)	21
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PscI	ACATGT	1 cut(s)	21
PsiI	TTATAA	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	251
Sau3AI	GATC	1 cut(s)	298
ScaI	AGTACT	1 cut(s)	222
SchI	GAGTC	1 cut(s)	93
SetI	ASST	9 cut(s)	31, 80, 207, 241, 250, 257, 292, 376, 475
SfaNI	GCATC	2 cut(s)	202, 224
SfcI	CTRYAG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
Sse9I	AATT	5 cut(s)	4, 62, 176, 321, 400
TaqI	TCGA	2 cut(s)	301, 475
TasI	AATT	5 cut(s)	4, 62, 176, 321, 400
TatI	WGTACW	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	2 cut(s)	24, 451
Tsp45I	GTSAC	2 cut(s)	24, 451
TspDTI	ATGAA	2 cut(s)	17, 153
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	2 cut(s)	25, 234
ZrmI	AGTACT	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.