MD17G1084200.v1.1

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0017379
Physical Location & Seq
Forward (+)
6940771 .. 6943116
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1084200.v1.1.491

Sequence Viewer

Length: 1080 bp
ATGGCTAAGATTTTCGAGATAAATCAGACTGAAGCACATATCAATAGGGTTGTTGGCACATACGGCTACATGTCACCAGAGTATACAAGATATAGCCATTTTTATGAGAAATTGGATGTATTTAGTTTTGGAGTTCTATTGTTGGAGATTGTAAGTGGAAAGAAGAATGTTGCTTTCTATCACTTTGAACATTCACCAACTCTTGCTGGATGGGCATGGGAGTTGTGGAAAGAAGGAAGAGGAATGGAGGTGATTGATGAATCAGTAAGGGAAACATGTCGGCCAGATGAAGCTTTGAGGTGCATCCACGTAGGGTTTTTGTGTGTTCAAGAAGCTCCAAGTGATCGACCAACAATTTCTTTGGTGATTCTTATGTTGCAGAGCACTGAAACTACATCTCTTCCACCTTCCAAAGAACCTGCCTTTTCAACATATAAGAATTCTAGTTTTGTTCCCTCTTCTCAAACACCTACAAGTTTTTCCCACAACGCAATCACCATAACCATGGATACCAAACCAATCTCGTTGTTCAAGTTCTCCATTATTTTATTACGTGTATTTCTCAAGTCTCGTATCTCCGTTGCAGCTGACACCATCAGCGAAAACAATTCTCTGACCGGTGATCAAACCATTGTTTCTTCAGGTGGGATCTTCGAGCTAGGTTTCTTCAAACCAGGTCAGCTTTCAAACTACTATATAGGCATATGGTACTCCAAGCACGTAGTATCTAAGAGGACTATTGTTTGGGTGGCAAATAGGGATATACATGCATGGGAGTTGTGGAAAGACGGAAAAGGAAAGGAGGTGATTGATGGATCAATAGGGGAAACATGCTGGCCTGATGGGGCTCAAAGGTGTATCCATGTGGGGTTTTTGTGCGTACAAGAAGAGCCAGATGATCGACTAACAATGTCTTCGGTAGTTCATAGCTGCAGAGCAATGAAGCTACACCTCCTCCACTTTCCAAAAAAACCTTCGTTTTCGACACATAAGAATCTTGGTACTGTTGGTTCTTCTCCTCGAACACCTACCAATTTTTCCCATAATTTAGTCACCATGAGTTTGCCAGAAGGTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

360

Amino Acids

40.41

Weight (kDa)

7.23

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 11 - 56 1.3e-07 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 21 - 122 2e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017379)

Species Orthologous Gene IDs
malus_domestica MD14G1065700.v1.1 MD17G1084200.v1.1 MD17G1088800.v1.1
prunus_persica Prupe.3G225600_v2.0.a1
pyrus_communis pycom17g08510
rosa_laevigata RLG00000002293
rosa_multiflora Rmu_sc0000399.1_g000003 Rmu_sc0000955.1_g000016 Rmu_sc0004576.1_g000020
rosa_roxburghii Rroxscaffold_2G00089350
rosa_rugosa Rorug02G0485900
rosa_samantha Rh1BG030900 Rh6BG126100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 427
AccI GTMKAC 1 cut(s) 83
AclWI GGATC 2 cut(s) 656, 823
AcoI YGGCCR 1 cut(s) 281
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 2 cut(s) 51, 624
AfaI GTAC 3 cut(s) 710, 882, 1003
AflIII ACRYGT 3 cut(s) 69, 275, 553
AgeI ACCGGT 1 cut(s) 617
AgsI TTSAA 6 cut(s) 188, 329, 429, 532, 670, 687
AjnI CCWGG 1 cut(s) 673
AjuI GAANNNNNNNTTGG 2 cut(s) 958, 990
AluBI AGCT 7 cut(s) 293, 335, 587, 658, 682, 930, 946
AluI AGCT 7 cut(s) 293, 335, 587, 658, 682, 930, 946
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 573
AlwI GGATC 2 cut(s) 656, 823
AoxI GGCC 2 cut(s) 281, 836
ApeKI GCWGC 2 cut(s) 584, 930
ApoI RAATTY 1 cut(s) 439
AsiGI ACCGGT 1 cut(s) 617
AsuHPI GGTGA 8 cut(s) 66, 186, 262, 376, 487, 632, 817, 1045
BanII GRGCYC 1 cut(s) 850
BbsI GAAGAC 1 cut(s) 906
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 2 cut(s) 596, 917
BccI CCATC 4 cut(s) 204, 602, 806, 836
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 675
BciVI GTATCC 2 cut(s) 502, 869
BclI TGATCA 1 cut(s) 622
BcoDI GTCTC 1 cut(s) 573
BfaI CTAG 2 cut(s) 444, 659
BfmI CTRYAG 1 cut(s) 931
BfuAI ACCTGC 1 cut(s) 427
BfuI GTATCC 2 cut(s) 502, 869
BisI GCNGC 2 cut(s) 585, 931
BlsI GCNGC 2 cut(s) 586, 932
Bme1390I CCNGG 1 cut(s) 675
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 906
BpuEI CTTGAG 1 cut(s) 548
BsaAI YACGTR 3 cut(s) 310, 554, 721
BsaJI CCNNGG 1 cut(s) 504
BsaWI WCCGGW 1 cut(s) 617
BsaXI ACNNNNNCTCC 2 cut(s) 939, 969
Bse118I RCCGGY 1 cut(s) 617
Bse3DI GCAATG 1 cut(s) 945
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 3 cut(s) 121, 215, 303
BseMI GCAATG 1 cut(s) 945
BseRI GAGGAG 2 cut(s) 944, 1008
BseXI GCAGC 2 cut(s) 596, 917
BshFI GGCC 2 cut(s) 283, 838
BshTI ACCGGT 1 cut(s) 617
BsiHKAI GWGCWC 1 cut(s) 386
BsiSI CCGG 1 cut(s) 618
BsmAI GTCTC 1 cut(s) 573
BsnI GGCC 2 cut(s) 283, 838
Bsp1286I GDGCHC 2 cut(s) 386, 850
Bsp143I GATC 5 cut(s) 343, 622, 648, 815, 898
Bsp19I CCATGG 1 cut(s) 504
BspANI GGCC 2 cut(s) 283, 838
BspMAI CTGCAG 1 cut(s) 935
BspMI ACCTGC 1 cut(s) 427
BspPI GGATC 2 cut(s) 656, 823
BspQI GCTCTTC 1 cut(s) 882
BsrDI GCAATG 1 cut(s) 945
BsrFI RCCGGY 1 cut(s) 617
BssAI RCCGGY 1 cut(s) 617
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 5 cut(s) 343, 622, 648, 815, 898
BssNAI GTATAC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 504
Bst1107I GTATAC 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 1 cut(s) 1006
Bst6I CTCTTC 4 cut(s) 232, 405, 463, 882
BstBAI YACGTR 3 cut(s) 310, 554, 721
BstC8I GCNNGC 1 cut(s) 836
BstDEI CTNAG 2 cut(s) 6, 729
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 3 cut(s) 121, 215, 303
BstKTI GATC 5 cut(s) 346, 625, 651, 818, 901
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 5 cut(s) 343, 622, 648, 815, 898
BstMWI GCNNNNNNNGC 2 cut(s) 63, 212
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 4 cut(s) 73, 279, 770, 834
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 1 cut(s) 931
BstV1I GCAGC 2 cut(s) 596, 917
BstV2I GAAGAC 1 cut(s) 906
BstX2I RGATCY 1 cut(s) 648
BstXI CCANNNNNNTGG 1 cut(s) 505
BstYI RGATCY 1 cut(s) 648
BstZ17I GTATAC 1 cut(s) 84
BsuI GTATCC 2 cut(s) 502, 869
BsuRI GGCC 2 cut(s) 283, 838
BtgI CCRYGG 1 cut(s) 504
BtsCI GGATG 3 cut(s) 121, 215, 303
BtsIMutI CAGTG 1 cut(s) 384
BveI ACCTGC 1 cut(s) 427
Cac8I GCNNGC 1 cut(s) 836
Cfr10I RCCGGY 1 cut(s) 617
CsiI ACCWGGT 1 cut(s) 673
Csp6I GTAC 3 cut(s) 709, 881, 1002
CspAI ACCGGT 1 cut(s) 617
CviAII CATG 9 cut(s) 70, 216, 276, 505, 767, 771, 831, 863, 1057
CviQI GTAC 3 cut(s) 709, 881, 1002
DdeI CTNAG 2 cut(s) 6, 729
DpnI GATC 5 cut(s) 345, 624, 650, 817, 900
DpnII GATC 5 cut(s) 343, 622, 648, 815, 898
EaeI YGGCCR 1 cut(s) 281
Eam1104I CTCTTC 4 cut(s) 232, 405, 463, 882
EarI CTCTTC 4 cut(s) 232, 405, 463, 882
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 850
Eco57I CTGAAG 2 cut(s) 51, 624
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 673
EcoT14I CCWWGG 1 cut(s) 504
EcoT22I ATGCAT 1 cut(s) 772
EcoT38I GRGCYC 1 cut(s) 850
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 9 cut(s) 73, 219, 279, 508, 770, 774, 834, 866, 1060
FatI CATG 9 cut(s) 69, 215, 275, 504, 766, 770, 830, 862, 1056
FauNDI CATATG 1 cut(s) 704
FbaI TGATCA 1 cut(s) 622
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 2 cut(s) 585, 931
FokI GGATG 3 cut(s) 128, 222, 290
FriOI GRGCYC 1 cut(s) 850
Fsp4HI GCNGC 2 cut(s) 585, 931
FspBI CTAG 2 cut(s) 444, 659
GluI GCNGC 2 cut(s) 585, 931
HaeIII GGCC 2 cut(s) 283, 838
HapII CCGG 1 cut(s) 618
Hin1II CATG 9 cut(s) 73, 219, 279, 508, 770, 774, 834, 866, 1060
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 3 cut(s) 260, 367, 994
HpaII CCGG 1 cut(s) 618
HphI GGTGA 8 cut(s) 66, 186, 262, 376, 487, 632, 817, 1045
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 2 cut(s) 27, 615
Hpy188III TCNNGA 2 cut(s) 16, 329
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 4 cut(s) 227, 417, 984, 1064
HpyCH4III ACNGT 1 cut(s) 1006
HpyCH4IV ACGT 3 cut(s) 309, 553, 720
HpyCH4V TGCA 5 cut(s) 303, 379, 584, 770, 933
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 212
HpyF3I CTNAG 2 cut(s) 6, 729
HpySE526I ACGT 3 cut(s) 309, 553, 720
Hsp92II CATG 9 cut(s) 73, 219, 279, 508, 770, 774, 834, 866, 1060
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 5 cut(s) 343, 622, 648, 815, 898
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 2 cut(s) 596, 917
LweI GCATC 1 cut(s) 312
MabI ACCWGGT 1 cut(s) 673
MaeI CTAG 2 cut(s) 444, 659
MaeII ACGT 3 cut(s) 309, 553, 720
MaeIII GTNAC 2 cut(s) 72, 1051
MalI GATC 5 cut(s) 345, 624, 650, 817, 900
MboI GATC 5 cut(s) 343, 622, 648, 815, 898
MflI RGATCY 1 cut(s) 648
MhlI GDGCHC 2 cut(s) 386, 850
MluCI AATT 6 cut(s) 110, 354, 439, 607, 1033, 1045
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 9 cut(s) 233, 241, 291, 466, 726, 796, 962, 965, 1029
Mph1103I ATGCAT 1 cut(s) 772
MslI CAYNNNNRTG 2 cut(s) 102, 503
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 1 cut(s) 618
MspR9I CCNGG 1 cut(s) 675
MvaI CCWGG 1 cut(s) 675
MwoI GCNNNNNNNGC 2 cut(s) 63, 212
NcoI CCATGG 1 cut(s) 504
NdeI CATATG 1 cut(s) 704
NdeII GATC 5 cut(s) 343, 622, 648, 815, 898
NlaIII CATG 9 cut(s) 73, 219, 279, 508, 770, 774, 834, 866, 1060
NmuCI GTSAC 2 cut(s) 72, 1051
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 4 cut(s) 73, 279, 770, 834
PciI ACATGT 2 cut(s) 69, 275
PciSI GCTCTTC 1 cut(s) 882
PfeI GAWTC 3 cut(s) 260, 367, 994
PinAI ACCGGT 1 cut(s) 617
PkrI GCNGC 2 cut(s) 586, 932
Ppu21I YACGTR 3 cut(s) 310, 554, 721
PscI ACATGT 2 cut(s) 69, 275
Psp6I CCWGG 1 cut(s) 673
PspGI CCWGG 1 cut(s) 673
PsrI GAACNNNNNNTAC 2 cut(s) 994, 1026
PstI CTGCAG 1 cut(s) 935
PsuI RGATCY 1 cut(s) 648
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 3 cut(s) 710, 882, 1003
RsaNI GTAC 3 cut(s) 709, 881, 1002
RseI CAYNNNNRTG 2 cut(s) 102, 503
SapI GCTCTTC 1 cut(s) 882
SatI GCNGC 2 cut(s) 585, 931
Sau3AI GATC 5 cut(s) 343, 622, 648, 815, 898
ScrFI CCNGG 1 cut(s) 675
SduI GDGCHC 2 cut(s) 386, 850
SexAI ACCWGGT 1 cut(s) 673
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 1 cut(s) 931
SmiMI CAYNNNNRTG 2 cut(s) 102, 503
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
Sse9I AATT 6 cut(s) 110, 354, 439, 607, 1033, 1045
SspMI CTAG 2 cut(s) 444, 659
StyD4I CCNGG 1 cut(s) 673
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 1 cut(s) 1006
TaiI ACGT 3 cut(s) 312, 556, 723
TaqI TCGA 7 cut(s) 15, 346, 654, 901, 983, 1021, 1075
TasI AATT 6 cut(s) 110, 354, 439, 607, 1033, 1045
TfiI GAWTC 3 cut(s) 260, 367, 994
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 2 cut(s) 72, 1051
TseI GCWGC 2 cut(s) 584, 930
Tsp45I GTSAC 2 cut(s) 72, 1051
TspDTI ATGAA 4 cut(s) 273, 303, 914, 956
TspGWI ACGGA 2 cut(s) 568, 804
TspRI CASTG 1 cut(s) 391
XapI RAATTY 1 cut(s) 439
XceI RCATGY 4 cut(s) 73, 279, 770, 834
XmiI GTMKAC 1 cut(s) 83
XspI CTAG 2 cut(s) 444, 659
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.