Rh1BG030900

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0017379
Physical Location & Seq
Forward (+)
4165036 .. 4166612
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG030900.1

Sequence Viewer

Length: 339 bp
ATGGAAGAATACTTTGGGAAAGAGAAGGCATGGGACCTATGGAAAGAAGGAAGGGGAATAGAGGTGATTGATGCATCAATCAGGGAAACATTTTGGGCTCATGAAGCTTTAAGGTGTATCCATGTAGGACTTCTGTGCGTTCAAGAATCTGTAGCTGATCGACCTGCAATGGCATCAGTAATTCACATGTTGCAGGGAAATGAAGCTACATCTCTTCCACCCACCAAAGAACCTGCTTTTTCAACACAAAAGAGTTTCAGTGCTATTGGTTCTTCTTCTCAAAGATCTACCAATTATTCAAACAATGCACTCACGATTAGTTTGCCAGAAGCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

112

Amino Acids

12.43

Weight (kDa)

5.57

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3403 PF11883 67 - 112 9.6e-06 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017379)

Species Orthologous Gene IDs
malus_domestica MD14G1065700.v1.1 MD17G1084200.v1.1 MD17G1088800.v1.1
prunus_persica Prupe.3G225600_v2.0.a1
pyrus_communis pycom17g08510
rosa_laevigata RLG00000002293
rosa_multiflora Rmu_sc0000399.1_g000003 Rmu_sc0000955.1_g000016 Rmu_sc0004576.1_g000020
rosa_roxburghii Rroxscaffold_2G00089350
rosa_rugosa Rorug02G0485900
rosa_samantha Rh1BG030900 Rh6BG126100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 172, 241
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 3 cut(s) 143, 243, 300
AjuI GAANNNNNNNTTGG 1 cut(s) 29
AluBI AGCT 4 cut(s) 107, 155, 206, 332
AluI AGCT 4 cut(s) 107, 155, 206, 332
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciVI GTATCC 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 150
BfuAI ACCTGC 2 cut(s) 172, 241
BfuI GTATCC 1 cut(s) 128
BglII AGATCT 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 35
BmsI GCATC 3 cut(s) 61, 83, 182
Bse3DI GCAATG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 100
Bsp143I GATC 2 cut(s) 157, 284
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 35
BspMI ACCTGC 2 cut(s) 172, 241
BsrDI GCAATG 1 cut(s) 174
BssMI GATC 2 cut(s) 157, 284
Bst6I CTCTTC 1 cut(s) 219
BstKTI GATC 2 cut(s) 160, 287
BstMBI GATC 2 cut(s) 157, 284
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuI GTATCC 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 265
BveI ACCTGC 2 cut(s) 172, 241
CciI TCATGA 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 34
CviAII CATG 4 cut(s) 30, 101, 122, 187
CviJI RGCY 5 cut(s) 98, 107, 155, 206, 332
CviKI_1 RGCY 5 cut(s) 98, 107, 155, 206, 332
DpnI GATC 2 cut(s) 159, 286
DpnII GATC 2 cut(s) 157, 284
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 100
FaeI CATG 4 cut(s) 33, 104, 125, 190
FaiI YATR 5 cut(s) 31, 40, 102, 123, 188
FaqI GGGAC 1 cut(s) 47
FatI CATG 4 cut(s) 29, 100, 121, 186
FriOI GRGCYC 1 cut(s) 100
Hin1II CATG 4 cut(s) 33, 104, 125, 190
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 1 cut(s) 146
HphI GGTGA 1 cut(s) 76
Hpy188III TCNNGA 3 cut(s) 101, 143, 313
HpyAV CCTTC 3 cut(s) 19, 41, 45
HpyCH4V TGCA 4 cut(s) 74, 167, 193, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
Hsp92II CATG 4 cut(s) 33, 104, 125, 190
Kzo9I GATC 2 cut(s) 157, 284
LpnPI CCDG 4 cut(s) 67, 177, 179, 246
LweI GCATC 3 cut(s) 61, 83, 182
MalI GATC 2 cut(s) 159, 286
MboI GATC 2 cut(s) 157, 284
MboII GAAGA 4 cut(s) 17, 206, 264, 267
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 2 cut(s) 180, 292
MnlI CCTC 1 cut(s) 55
Mph1103I ATGCAT 1 cut(s) 76
MseI TTAA 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 2 cut(s) 157, 284
NlaIII CATG 4 cut(s) 33, 104, 125, 190
NlaIV GGNNCC 1 cut(s) 35
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 1 cut(s) 190
PagI TCATGA 1 cut(s) 100
PciI ACATGT 1 cut(s) 186
PfeI GAWTC 1 cut(s) 146
PpuMI RGGWCCY 1 cut(s) 34
PscI ACATGT 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 34
PspPPI RGGWCCY 1 cut(s) 34
PsuI RGATCY 1 cut(s) 284
SaqAI TTAA 1 cut(s) 110
Sau3AI GATC 2 cut(s) 157, 284
Sau96I GGNCC 1 cut(s) 34
SduI GDGCHC 1 cut(s) 100
SetI ASST 9 cut(s) 39, 66, 109, 116, 157, 166, 208, 235, 334
SfaNI GCATC 3 cut(s) 61, 83, 182
SfcI CTRYAG 1 cut(s) 150
SinI GGWCC 1 cut(s) 34
Sse9I AATT 2 cut(s) 180, 292
TaqI TCGA 2 cut(s) 160, 334
TasI AATT 2 cut(s) 180, 292
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 117, 216
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 34
XceI RCATGY 1 cut(s) 190
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.