Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008551

Physical Location & Seq

Genomic Coordinates Reverse (-)

26023870 .. 26024479

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1167300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAGAATGGGAGCTTGAAAGACATGTTGAATCAAGTTGCGAACGGAACAAGACAGTTGGATTGCCTTACAAGGCATAACATTGCTCTTGGAGTTGTTGCAGGGCTTGAATACCTTCACATGGACAACACCCCTCAAATAATTCATGGCGCTCTCGGTGCAGCAAACATCTTGCTTGATGGTGATATGGAAGCTCGGATTGCATATTTTGGGCATGCAAAAAATGCCGAACGCATTATTGCACCAGAATACCATCAGACAATGAAGTTCACAGACAAGTGTGACATATACTGTTCCGGAGTGGTGTTGGGGATTCTGGTGATGGGAAAGCTTCTATCCGATGAGTTTTTCCAGAACACGAACGAGATGAGTCTGGTTAAGTGGATGAGGAATGTCATGACTTCAGAGAACCCTAAGCAGGCAATCGATGTGCAATTGATGGGAAACAAATACGAGGCGCAAATGCTCCTGGTTCTTAAGATTGCTTGCTTTTGCACTTTGGATAACCTGAAAGAGAGGCCTAACAGTAAGGACGTTCGGTGTATGCTGGCTCAAATCAAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004713 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010941 GO:0010942 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0031347 GO:0031349 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

189

Amino Acids

21.12

Weight (kDa)

6.99

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 136	5.5e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 137	3.2e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31880
fragaria_vesca	FvH4_5g06700
malus_domestica	MD14G1167300.v1.1 MD14G1167400.v1.1
prunus_persica	Prupe.5G161700_v2.0.a1
pyrus_communis	pycom06g14450 pycom14g13960 pycom14g13970
rosa_chinensis	RchiOBHm_Chr7g0191951 RchiOBHm_Chr7g0191971
rosa_laevigata	RLG00000004413 RLG00000004415
rosa_roxburghii	Rroxscaffold_3G00263400 Rroxscaffold_3G00263440
rosa_rugosa	Rorug06G0511800 Rorug06G0511900
rosa_samantha	Rh7AG122200 Rh7AG122300 Rh7BG123900 Rh7CG126400 Rh7CG126600
rosa_wichuraiana	Rw7G010400 Rw7G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	2 cut(s)	121, 418
AflII	CTTAAG	1 cut(s)	476
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	3 cut(s)	19, 31, 110
AjnI	CCWGG	1 cut(s)	468
AluBI	AGCT	3 cut(s)	15, 194, 331
AluI	AGCT	3 cut(s)	15, 194, 331
Aor13HI	TCCGGA	1 cut(s)	296
AoxI	GGCC	1 cut(s)	518
ApeKI	GCWGC	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	114
AspLEI	GCGC	2 cut(s)	152, 460
AsuHPI	GGTGA	2 cut(s)	194, 331
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	4 cut(s)	173, 261, 316, 433
BciT130I	CCWGG	1 cut(s)	470
BfoI	RGCGCY	1 cut(s)	153
BfrI	CTTAAG	1 cut(s)	476
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	470
BmrFI	CCNGG	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	414
Bsa29I	ATCGAT	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 418
Bse3DI	GCAATG	1 cut(s)	81
BseAI	TCCGGA	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	470
BseCI	ATCGAT	1 cut(s)	426
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	121, 418
BseMI	GCAATG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	520
BshVI	ATCGAT	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	121, 418
BsnI	GGCC	1 cut(s)	520
Bsp13I	TCCGGA	1 cut(s)	296
BspANI	GGCC	1 cut(s)	520
BspDI	ATCGAT	1 cut(s)	426
BspEI	TCCGGA	1 cut(s)	296
BspHI	TCATGA	1 cut(s)	396
BspTI	CTTAAG	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	3 cut(s)	57, 293, 527
BstAFI	CTTAAG	1 cut(s)	476
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	4 cut(s)	216, 420, 487, 549
BstDEI	CTNAG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	152, 460
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 200, 224
BstNI	CCWGG	1 cut(s)	470
BstNSI	RCATGY	2 cut(s)	28, 218
BstSCI	CCNGG	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	520
BsuTUI	ATCGAT	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	390
Cac8I	GCNNGC	4 cut(s)	216, 420, 487, 549
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	2 cut(s)	152, 460
ClaI	ATCGAT	1 cut(s)	426
CviAII	CATG	5 cut(s)	25, 121, 146, 215, 397
CviJI	RGCY	6 cut(s)	15, 106, 194, 331, 520, 551
CviKI_1	RGCY	6 cut(s)	15, 106, 194, 331, 520, 551
DdeI	CTNAG	1 cut(s)	414
Eco147I	AGGCCT	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	468
FaeI	CATG	5 cut(s)	28, 124, 149, 218, 400
FatI	CATG	5 cut(s)	24, 120, 145, 214, 396
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	1 cut(s)	162
GlaI	GCGC	2 cut(s)	151, 459
GluI	GCNGC	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	520
HapII	CCGG	1 cut(s)	297
HhaI	GCGC	2 cut(s)	152, 460
Hin1II	CATG	5 cut(s)	28, 124, 149, 218, 400
Hin6I	GCGC	2 cut(s)	150, 458
HinP1I	GCGC	2 cut(s)	150, 458
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	31, 313, 370
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	2 cut(s)	194, 331
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	4 cut(s)	198, 258, 340, 406
Hpy188III	TCNNGA	3 cut(s)	297, 352, 397
Hpy8I	GTNNAC	1 cut(s)	270
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	3 cut(s)	57, 293, 527
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	7 cut(s)	101, 161, 203, 218, 242, 433, 495
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 200, 224
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	5 cut(s)	28, 124, 149, 218, 400
HspAI	GCGC	2 cut(s)	150, 458
Kpn2I	TCCGGA	1 cut(s)	296
LmnI	GCTCC	2 cut(s)	12, 471
Lsp1109I	GCAGC	1 cut(s)	173
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	1 cut(s)	281
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	434
MluCI	AATT	2 cut(s)	141, 434
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	4 cut(s)	144, 381, 448, 510
MroI	TCCGGA	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	2 cut(s)	378, 477
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	470
MunI	CAATTG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	3 cut(s)	158, 200, 224
NlaIII	CATG	5 cut(s)	28, 124, 149, 218, 400
NmuCI	GTSAC	1 cut(s)	281
NspI	RCATGY	2 cut(s)	28, 218
PaeI	GCATGC	1 cut(s)	218
PagI	TCATGA	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	520
PciI	ACATGT	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	31, 313
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
PscI	ACATGT	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	378, 477
SatI	GCNGC	1 cut(s)	162
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	470
SetI	ASST	6 cut(s)	17, 117, 196, 333, 510, 537
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	2 cut(s)	141, 434
SseBI	AGGCCT	1 cut(s)	520
StuI	AGGCCT	1 cut(s)	520
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	3 cut(s)	57, 293, 527
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	1 cut(s)	426
TasI	AATT	2 cut(s)	141, 434
TfiI	GAWTC	2 cut(s)	31, 313
Tru1I	TTAA	2 cut(s)	378, 477
Tru9I	TTAA	2 cut(s)	378, 477
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	17, 134, 278
TspGWI	ACGGA	1 cut(s)	60
Vha464I	CTTAAG	1 cut(s)	476
XceI	RCATGY	2 cut(s)	28, 218
XmnI	GAANNNNTTC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.