Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008551

Physical Location & Seq

Genomic Coordinates Forward (+)

57343458 .. 57345733

Gene Structure 2276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGACCATTTTCCCCGGAAACCGCAGCTCCTCCGCGTCCTCACCTTCCTCTCCCTCCTCCTCCTCATCCACGGTGGTAGGCTCAACCTCGACCCTTCGGACCTTCAAGCCCTCATCACCGTCCAAACCCACCTCGGCTTCCACACCCCGCACGAGCCAAACCCACCAACGCATGCAACACTCCCGCGTCTTCTGCGAGAGAAGACTCTCCAACAACACCTACTTCTAAGGCTCCAGCTCCAGTCCATCCGCAGCACCGAAGAAGAAGAAGAAGAAGAAGAAACTCGGAGGTCGCTTGGGTTCTTCGCCGAGCGCCGGCCGGAGCATATCCGGTTCATCTTCTCTCTGCTGTTCAAGTTGCTTTTGGCCGTGGTTAGAGGAGGTGGAGGCAAGGACTCGGTTTACAAAGCCGAGTTGCCGGGAAGCAACGGGAAGATAATAGCTATTAAGAAGATTAATCAACCTCCTAAGGAAGCGGCAGAGCCGACGGAGGAAGACAAGAAGCGGATGAATAAGAAGATGCGTCAAATTCGGGCGGAGATCAATACGTTTCGAAGGGAGAAGGGAATTGGATTGGTTAACAAGGCACGAATTGCAATAGGAATCGCTTCGTGGCTTGAATATCTCCATGTCCACCATACACCTCACATCATTCACGGGGATCCGAAGCCGGCAAACGTCCCGCTTGATGACGATATGGAAGCTCGAATTGCAGATTTTGGGCTTGCGAAAGCAATGCCCGATTACCACACGCATATGACGTCTTCAAATGTGGCAGAACGGTTGGTTTCATTGCACCGACAACTCCGTCGACGCCCAACCCGCTTCGCCACCGCCTCTTTCCGTACCCAACCTTATATCTCGACCCCAGCCGAATTGACTCCGAGATCCACCTACGCACCCCGTCGCATCCACCCACCAAGTGAATCACCGCTCCAAGCTCGCCATCATCGCACCACCACAAAGCGCCGCCGAGATAAGAAGAAGGAGTACAAGTCCTCCCGGTTGAAGACCATGCACGCCAACGAGGCCAGCGAGAGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004713 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010941 GO:0010942 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0031347 GO:0031349 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

348

Amino Acids

40.05

Weight (kDa)

10.26

Isoelectric Point (pI)

68.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	187 - 254	8.3e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	196 - 253	6.6e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31880
fragaria_vesca	FvH4_5g06700
malus_domestica	MD14G1167300.v1.1 MD14G1167400.v1.1
prunus_persica	Prupe.5G161700_v2.0.a1
pyrus_communis	pycom06g14450 pycom14g13960 pycom14g13970
rosa_chinensis	RchiOBHm_Chr7g0191951 RchiOBHm_Chr7g0191971
rosa_laevigata	RLG00000004413 RLG00000004415
rosa_roxburghii	Rroxscaffold_3G00263400 Rroxscaffold_3G00263440
rosa_rugosa	Rorug06G0511800 Rorug06G0511900
rosa_samantha	Rh7AG122200 Rh7AG122300 Rh7BG123900 Rh7CG126400 Rh7CG126600
rosa_wichuraiana	Rw7G010400 Rw7G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	807
AatII	GACGTC	1 cut(s)	764
AccBSI	CCGCTC	1 cut(s)	934
AccI	GTMKAC	1 cut(s)	811
AccII	CGCG	2 cut(s)	36, 187
AclWI	GGATC	3 cut(s)	656, 669, 882
AcoI	YGGCCR	2 cut(s)	317, 366
AcsI	RAATTY	1 cut(s)	528
AcyI	GRCGYC	2 cut(s)	761, 814
AdeI	CACNNNGTG	1 cut(s)	923
AfaI	GTAC	2 cut(s)	847, 992
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	5 cut(s)	107, 355, 620, 768, 1009
AluBI	AGCT	5 cut(s)	28, 238, 443, 704, 941
AluI	AGCT	5 cut(s)	28, 238, 443, 704, 941
AlwI	GGATC	3 cut(s)	656, 669, 882
AoxI	GGCC	3 cut(s)	317, 366, 1029
ApeKI	GCWGC	2 cut(s)	25, 252
ApoI	RAATTY	1 cut(s)	528
AseI	ATTAAT	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	607
AspLEI	GCGC	2 cut(s)	315, 969
AspS9I	GGNCC	2 cut(s)	4, 100
AsuC2I	CCSGG	3 cut(s)	16, 420, 1003
AsuHPI	GGTGA	3 cut(s)	34, 109, 921
AsuII	TTCGAA	1 cut(s)	553
AvaII	GGWCC	2 cut(s)	4, 100
AxyI	CCTNAGG	1 cut(s)	468
BamHI	GGATCC	1 cut(s)	661
BarI	GAAGNNNNNNTAC	2 cut(s)	974, 1006
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	5 cut(s)	182, 209, 501, 756, 1016
BbvI	GCAGC	2 cut(s)	37, 264
BccI	CCATC	2 cut(s)	254, 954
BceAI	ACGGC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	718, 752
BcnI	CCSGG	3 cut(s)	16, 420, 1003
BfoI	RGCGCY	2 cut(s)	316, 970
BglI	GCCNNNNNGGC	1 cut(s)	1028
BisI	GCNGC	4 cut(s)	26, 253, 477, 970
BlsI	GCNGC	4 cut(s)	27, 254, 478, 971
Bme1390I	CCNGG	3 cut(s)	16, 420, 1003
Bme18I	GGWCC	2 cut(s)	4, 100
BmgT120I	GGNCC	2 cut(s)	4, 100
BmiI	GGNNCC	2 cut(s)	233, 663
BmrFI	CCNGG	3 cut(s)	16, 420, 1003
BmsI	GCATC	2 cut(s)	510, 918
BpiI	GAAGAC	5 cut(s)	182, 209, 501, 756, 1016
BpmI	CTGGAG	2 cut(s)	218, 224
Bpu14I	TTCGAA	1 cut(s)	553
BpuMI	CCSGG	3 cut(s)	16, 420, 1003
BsaHI	GRCGYC	2 cut(s)	761, 814
BsaJI	CCNNGG	4 cut(s)	14, 70, 133, 369
BsaWI	WCCGGW	1 cut(s)	330
BsaXI	ACNNNNNCTCC	6 cut(s)	12, 42, 980, 983, 1010, 1013
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse118I	RCCGGY	2 cut(s)	315, 670
Bse1I	ACTGG	1 cut(s)	241
Bse21I	CCTNAGG	1 cut(s)	468
Bse3DI	GCAATG	2 cut(s)	741, 791
BseDI	CCNNGG	4 cut(s)	14, 70, 133, 369
BseGI	GGATG	4 cut(s)	66, 246, 513, 909
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMI	GCAATG	2 cut(s)	741, 791
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	5 cut(s)	20, 47, 50, 53, 393
BseX3I	CGGCCG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	37, 264
BseYI	CCCAGC	1 cut(s)	868
Bsh1236I	CGCG	2 cut(s)	36, 187
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	3 cut(s)	319, 368, 1031
BsiEI	CGRYCG	1 cut(s)	320
BsiSI	CCGG	7 cut(s)	16, 316, 320, 331, 419, 671, 1003
BslFI	GGGAC	1 cut(s)	665
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	665
BsnI	GGCC	3 cut(s)	319, 368, 1031
Bsp119I	TTCGAA	1 cut(s)	553
Bsp143I	GATC	3 cut(s)	540, 661, 887
BspANI	GGCC	3 cut(s)	319, 368, 1031
BspFNI	CGCG	2 cut(s)	36, 187
BspLI	GGNNCC	2 cut(s)	233, 663
BspPI	GGATC	3 cut(s)	656, 669, 882
BspT104I	TTCGAA	1 cut(s)	553
BsrBI	CCGCTC	1 cut(s)	934
BsrDI	GCAATG	2 cut(s)	741, 791
BsrFI	RCCGGY	2 cut(s)	315, 670
BsrI	ACTGG	1 cut(s)	241
BssAI	RCCGGY	2 cut(s)	315, 670
BssECI	CCNNGG	4 cut(s)	14, 70, 133, 369
BssMI	GATC	3 cut(s)	540, 661, 887
BssNI	GRCGYC	2 cut(s)	761, 814
BssSI	CACGAG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	152
Bst4CI	ACNGT	3 cut(s)	74, 121, 783
BstACI	GRCGYC	2 cut(s)	761, 814
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstBI	TTCGAA	1 cut(s)	553
BstC8I	GCNNGC	7 cut(s)	174, 317, 672, 726, 943, 1020, 1033
BstDEI	CTNAG	2 cut(s)	227, 468
BstDSI	CCRYGG	2 cut(s)	70, 369
BstF5I	GGATG	4 cut(s)	66, 246, 513, 909
BstFNI	CGCG	2 cut(s)	36, 187
BstH2I	RGCGCY	2 cut(s)	316, 970
BstHHI	GCGC	2 cut(s)	315, 969
BstKTI	GATC	3 cut(s)	543, 664, 890
BstMBI	GATC	3 cut(s)	540, 661, 887
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	6 cut(s)	193, 593, 710, 822, 951, 1028
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	3 cut(s)	14, 418, 1001
BstUI	CGCG	2 cut(s)	36, 187
BstV1I	GCAGC	2 cut(s)	37, 264
BstV2I	GAAGAC	5 cut(s)	182, 209, 501, 756, 1016
BstX2I	RGATCY	2 cut(s)	661, 887
BstYI	RGATCY	2 cut(s)	661, 887
BstZI	CGGCCG	1 cut(s)	317
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	3 cut(s)	319, 368, 1031
BtgI	CCRYGG	2 cut(s)	70, 369
BtgZI	GCGATG	1 cut(s)	935
BtsCI	GGATG	4 cut(s)	66, 246, 513, 909
Cac8I	GCNNGC	7 cut(s)	174, 317, 672, 726, 943, 1020, 1033
CfoI	GCGC	2 cut(s)	315, 969
Cfr10I	RCCGGY	2 cut(s)	315, 670
Cfr13I	GGNCC	2 cut(s)	4, 100
CseI	GACGC	4 cut(s)	25, 176, 512, 822
Csp6I	GTAC	2 cut(s)	846, 991
CviAII	CATG	3 cut(s)	173, 629, 1015
CviQI	GTAC	2 cut(s)	846, 991
DdeI	CTNAG	2 cut(s)	227, 468
DpnI	GATC	3 cut(s)	542, 663, 889
DpnII	GATC	3 cut(s)	540, 661, 887
DraIII	CACNNNGTG	1 cut(s)	923
DrdI	GACNNNNNNGTC	1 cut(s)	807
DseDI	GACNNNNNNGTC	1 cut(s)	807
EaeI	YGGCCR	2 cut(s)	317, 366
EagI	CGGCCG	1 cut(s)	317
EciI	GGCGGA	1 cut(s)	551
EclXI	CGGCCG	1 cut(s)	317
Eco47I	GGWCC	2 cut(s)	4, 100
Eco52I	CGGCCG	1 cut(s)	317
Eco81I	CCTNAGG	1 cut(s)	468
FaeI	CATG	3 cut(s)	176, 632, 1018
FaiI	YATR	9 cut(s)	174, 327, 630, 639, 698, 756, 758, 858, 1016
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	3 cut(s)	172, 628, 1014
FauI	CCCGC	4 cut(s)	156, 192, 690, 830
FauNDI	CATATG	1 cut(s)	756
FblI	GTMKAC	1 cut(s)	811
Fnu4HI	GCNGC	4 cut(s)	26, 253, 477, 970
FokI	GGATG	4 cut(s)	53, 233, 520, 896
Fsp4HI	GCNGC	4 cut(s)	26, 253, 477, 970
GlaI	GCGC	2 cut(s)	314, 968
GluI	GCNGC	4 cut(s)	26, 253, 477, 970
GsaI	CCCAGC	1 cut(s)	872
GsuI	CTGGAG	2 cut(s)	218, 224
HaeII	RGCGCY	2 cut(s)	316, 970
HaeIII	GGCC	3 cut(s)	319, 368, 1031
HapII	CCGG	7 cut(s)	16, 316, 320, 331, 419, 671, 1003
HgaI	GACGC	4 cut(s)	25, 176, 512, 822
HhaI	GCGC	2 cut(s)	315, 969
Hin1I	GRCGYC	2 cut(s)	761, 814
Hin1II	CATG	3 cut(s)	176, 632, 1018
Hin6I	GCGC	2 cut(s)	313, 967
HinP1I	GCGC	2 cut(s)	313, 967
HincII	GTYRAC	2 cut(s)	580, 812
HindII	GTYRAC	2 cut(s)	580, 812
HinfI	GANTC	5 cut(s)	205, 395, 603, 880, 926
HpaI	GTTAAC	1 cut(s)	580
HpaII	CCGG	7 cut(s)	16, 316, 320, 331, 419, 671, 1003
HphI	GGTGA	3 cut(s)	34, 109, 921
Hpy166II	GTNNAC	4 cut(s)	403, 580, 634, 812
Hpy188I	TCNGA	4 cut(s)	100, 288, 666, 885
Hpy188III	TCNNGA	1 cut(s)	862
Hpy8I	GTNNAC	4 cut(s)	403, 580, 634, 812
Hpy99I	CGWCG	4 cut(s)	490, 813, 816, 909
HpyAV	CCTTC	6 cut(s)	55, 105, 113, 549, 556, 979
HpyCH4III	ACNGT	3 cut(s)	74, 121, 783
HpyCH4IV	ACGT	3 cut(s)	548, 678, 761
HpyCH4V	TGCA	5 cut(s)	176, 596, 713, 796, 1018
HpyF10VI	GCNNNNNNNGC	6 cut(s)	193, 593, 710, 822, 951, 1028
HpyF3I	CTNAG	2 cut(s)	227, 468
HpySE526I	ACGT	3 cut(s)	548, 678, 761
Hsp92I	GRCGYC	2 cut(s)	761, 814
Hsp92II	CATG	3 cut(s)	176, 632, 1018
HspAI	GCGC	2 cut(s)	313, 967
KroI	GCCGGC	2 cut(s)	315, 670
KroNI	GCCGGC	2 cut(s)	317, 672
KspAI	GTTAAC	1 cut(s)	580
Kzo9I	GATC	3 cut(s)	540, 661, 887
LmnI	GCTCC	5 cut(s)	33, 237, 243, 322, 939
Lsp1109I	GCAGC	2 cut(s)	37, 264
LweI	GCATC	2 cut(s)	510, 918
MaeII	ACGT	3 cut(s)	548, 678, 761
MalI	GATC	3 cut(s)	542, 663, 889
MbiI	CCGCTC	1 cut(s)	934
MboI	GATC	3 cut(s)	540, 661, 887
MflI	RGATCY	2 cut(s)	661, 887
MluCI	AATT	5 cut(s)	528, 567, 591, 708, 875
MlyI	GAGTC	3 cut(s)	199, 389, 874
MmeI	TCCRAC	1 cut(s)	235
MroNI	GCCGGC	2 cut(s)	315, 670
MroXI	GAANNNNTTC	1 cut(s)	607
MseI	TTAA	3 cut(s)	447, 456, 579
MslI	CAYNNNNRTG	1 cut(s)	755
MspI	CCGG	7 cut(s)	16, 316, 320, 331, 419, 671, 1003
MspR9I	CCNGG	3 cut(s)	16, 420, 1003
MvnI	CGCG	2 cut(s)	36, 187
MwoI	GCNNNNNNNGC	6 cut(s)	193, 593, 710, 822, 951, 1028
NaeI	GCCGGC	2 cut(s)	317, 672
NciI	CCSGG	3 cut(s)	16, 420, 1003
NdeI	CATATG	1 cut(s)	756
NdeII	GATC	3 cut(s)	540, 661, 887
NgoMIV	GCCGGC	2 cut(s)	315, 670
NlaIII	CATG	3 cut(s)	176, 632, 1018
NlaIV	GGNNCC	2 cut(s)	233, 663
NmeAIII	GCCGAG	4 cut(s)	114, 334, 436, 998
NspI	RCATGY	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	553
PaeI	GCATGC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	2 cut(s)	758, 1032
PdiI	GCCGGC	2 cut(s)	317, 672
PdmI	GAANNNNTTC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	603, 926
PkrI	GCNGC	4 cut(s)	27, 254, 478, 971
PleI	GAGTC	3 cut(s)	199, 389, 874
PpsI	GAGTC	3 cut(s)	199, 389, 874
PshBI	ATTAAT	1 cut(s)	456
PspFI	CCCAGC	1 cut(s)	868
PspN4I	GGNNCC	2 cut(s)	233, 663
PspPI	GGNCC	2 cut(s)	4, 100
PsuI	RGATCY	2 cut(s)	661, 887
RsaI	GTAC	2 cut(s)	847, 992
RsaNI	GTAC	2 cut(s)	846, 991
RseI	CAYNNNNRTG	1 cut(s)	755
SalI	GTCGAC	1 cut(s)	810
SaqAI	TTAA	3 cut(s)	447, 456, 579
SatI	GCNGC	4 cut(s)	26, 253, 477, 970
Sau3AI	GATC	3 cut(s)	540, 661, 887
Sau96I	GGNCC	2 cut(s)	4, 100
SchI	GAGTC	3 cut(s)	199, 389, 874
ScrFI	CCNGG	3 cut(s)	16, 420, 1003
SfaNI	GCATC	2 cut(s)	510, 918
SfuI	TTCGAA	1 cut(s)	553
SgrDI	CGTCGACG	1 cut(s)	810
SinI	GGWCC	2 cut(s)	4, 100
SmiMI	CAYNNNNRTG	1 cut(s)	755
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	5 cut(s)	528, 567, 591, 708, 875
StyD4I	CCNGG	3 cut(s)	14, 418, 1001
TaaI	ACNGT	3 cut(s)	74, 121, 783
TaiI	ACGT	3 cut(s)	551, 681, 764
TaqI	TCGA	5 cut(s)	90, 553, 706, 811, 863
TasI	AATT	5 cut(s)	528, 567, 591, 708, 875
TatI	WGTACW	1 cut(s)	990
TauI	GCSGC	2 cut(s)	479, 972
TfiI	GAWTC	2 cut(s)	603, 926
Tru1I	TTAA	3 cut(s)	447, 456, 579
Tru9I	TTAA	3 cut(s)	447, 456, 579
TseI	GCWGC	2 cut(s)	25, 252
TspDTI	ATGAA	3 cut(s)	325, 524, 780
TspGWI	ACGGA	3 cut(s)	503, 797, 833
VpaK11BI	GGWCC	2 cut(s)	4, 100
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	1 cut(s)	528
XceI	RCATGY	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	811
XmnI	GAANNNNTTC	1 cut(s)	607
ZraI	GACGTC	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.