Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008551

Physical Location & Seq

Genomic Coordinates Reverse (-)

9834050 .. 9834436

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG126400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCTGACTACCAGACGCATATCACGACTTCAAATGTGGCAGGAACGGTTGGTTACATTGCACCGGAGTATCATCAGACACTTAAGTTCACAGACAAGTGTGATATATACAGTTTCGGGGTATTGCTCGGGGTACTGATCATAGGAAAGCTACCGTCCGATGAATTTTTCCAGACCACCAGTGAGATGAGTCTGGTTAAGTGGATGAAGAATGTTCTGACGTCCGAGGATCCTAAGCAGGCAATCGACTCAAAATTGATGGGAAATGGATTTGAGGACCAAATGCTCTTGGTTCTAAAGATAGCATGCTTTTGCACAGTGGATAACCCGAAAGAGAGACCTAATAGTAAGGATGTTAGGTGCATGTTGGATCAAATCAAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004713 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010941 GO:0010942 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0031347 GO:0031349 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

128

Amino Acids

14.47

Weight (kDa)

5.52

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	8 - 118	3.5e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	10 - 79	5.3e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31880
fragaria_vesca	FvH4_5g06700
malus_domestica	MD14G1167300.v1.1 MD14G1167400.v1.1
prunus_persica	Prupe.5G161700_v2.0.a1
pyrus_communis	pycom06g14450 pycom14g13960 pycom14g13970
rosa_chinensis	RchiOBHm_Chr7g0191951 RchiOBHm_Chr7g0191971
rosa_laevigata	RLG00000004413 RLG00000004415
rosa_roxburghii	Rroxscaffold_3G00263400 Rroxscaffold_3G00263440
rosa_rugosa	Rorug06G0511800 Rorug06G0511900
rosa_samantha	Rh7AG122200 Rh7AG122300 Rh7BG123900 Rh7CG126400 Rh7CG126600
rosa_wichuraiana	Rw7G010400 Rw7G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	224
AclWI	GGATC	3 cut(s)	224, 237, 378
AcsI	RAATTY	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	1 cut(s)	135
AflII	CTTAAG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	33
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	3 cut(s)	224, 237, 378
Ama87I	CYCGRG	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	277
BaeI	ACNNNNGTAYC	2 cut(s)	53, 86
BamHI	GGATCC	1 cut(s)	229
BccI	CCATC	1 cut(s)	253
BclI	TGATCA	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	331
BfrI	CTTAAG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	210, 358
BseMI	GCAATG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	331
Bso31I	GGTCTC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	138, 229, 370
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	3 cut(s)	224, 237, 378
BspTI	CTTAAG	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	138, 229, 370
BssNI	GRCGYC	1 cut(s)	221
Bst4CI	ACNGT	4 cut(s)	49, 113, 156, 319
BstACI	GRCGYC	1 cut(s)	221
BstAFI	CTTAAG	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	240, 307
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	210, 358
BstKTI	GATC	3 cut(s)	141, 232, 373
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	3 cut(s)	138, 229, 370
BstNSI	RCATGY	2 cut(s)	309, 367
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	210, 358
BtsIMutI	CAGTG	2 cut(s)	187, 324
Cac8I	GCNNGC	2 cut(s)	240, 307
Cfr13I	GGNCC	1 cut(s)	277
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	2 cut(s)	306, 364
CviJI	RGCY	1 cut(s)	151
CviKI_1	RGCY	1 cut(s)	151
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	3 cut(s)	140, 231, 372
DpnII	GATC	3 cut(s)	138, 229, 370
Eco31I	GGTCTC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	128
FaeI	CATG	2 cut(s)	309, 367
FaiI	YATR	6 cut(s)	21, 107, 109, 143, 307, 365
FatI	CATG	2 cut(s)	305, 363
FbaI	TGATCA	1 cut(s)	138
FokI	GGATG	2 cut(s)	217, 365
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	309, 367
HinfI	GANTC	2 cut(s)	190, 248
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	4 cut(s)	78, 160, 219, 226
Hpy188III	TCNNGA	2 cut(s)	25, 172
Hpy8I	GTNNAC	1 cut(s)	90
HpyCH4III	ACNGT	4 cut(s)	49, 113, 156, 319
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	62, 315, 363
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	309, 367
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	138, 229, 370
LpnPI	CCDG	8 cut(s)	18, 26, 27, 78, 179, 185, 193, 224
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	3 cut(s)	140, 231, 372
MboI	GATC	3 cut(s)	138, 229, 370
MboII	GAAGA	1 cut(s)	220
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	2 cut(s)	164, 254
MlyI	GAGTC	2 cut(s)	199, 242
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	2 cut(s)	220, 268
MseI	TTAA	2 cut(s)	84, 198
MspCI	CTTAAG	1 cut(s)	83
MspI	CCGG	1 cut(s)	65
NdeII	GATC	3 cut(s)	138, 229, 370
NlaIII	CATG	2 cut(s)	309, 367
NlaIV	GGNNCC	1 cut(s)	231
NspI	RCATGY	2 cut(s)	309, 367
PaeI	GCATGC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PleI	GAGTC	2 cut(s)	198, 242
PpsI	GAGTC	2 cut(s)	198, 242
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	84, 198
Sau3AI	GATC	3 cut(s)	138, 229, 370
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	2 cut(s)	199, 242
SetI	ASST	4 cut(s)	153, 224, 343, 362
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SphI	GCATGC	1 cut(s)	309
Sse9I	AATT	2 cut(s)	164, 254
TaaI	ACNGT	4 cut(s)	49, 113, 156, 319
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	246
TasI	AATT	2 cut(s)	164, 254
Tru1I	TTAA	2 cut(s)	84, 198
Tru9I	TTAA	2 cut(s)	84, 198
TscAI	CASTG	2 cut(s)	187, 324
TspDTI	ATGAA	2 cut(s)	177, 221
TspRI	CASTG	2 cut(s)	187, 324
Vha464I	CTTAAG	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	2 cut(s)	309, 367
ZraI	GACGTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.