Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008551

Physical Location & Seq

Genomic Coordinates Forward (+)

62660999 .. 62663316

Gene Structure 2318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0511900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGTGTGGATTACTATAACATATTGAAGGTGAATAGGAATGCTACAGAAGATGATCTCAAAAAGGCTTATAGAAGGCTGGCCATGAAATGGCACCCTGATAAGAATCCCAATGACAAGAAAGAAGCTGAGGCCAAATTCAAGCAGATCTCTGAGGCCTATGAGGTCTTGAGTGATCCTCAGAAGAGGCAAATATATGATCAGTATGGAGAGGAAGGATTGAAAGACATGCCACCACCTGGAAGTGGTGGGTTCCCATTTGGTAGTGGCAGTGGCAGTGGATCAAAAGGATTCAATCCTAGAAATGCAGAGGATATCTTTGCAGAATTCTTTGGAAGTACTCCTTTTGGATTTGGGTCATCAGGCCCTGGTAGGTCTTCAAGATTTGGGTCCGATGGAGGAGGGATGTTTGGGGGATTTGGTGGAAGCAGCGAAAATGTTTTTCGATCATATAGTGAGAACGTTACACCAAAGAAACCACCAGCAGTGGAGAGCAAGTTGCCTTGCAGCCTCGAGGAGCTGTACACTGGTTCAACAAGGAAAATGAAAATCTCTAGGACTGTGGTTGATGCAAATGGACGTCAAGCGCCGGAAACAGAAATACTAACTATTGATGTGAAGCCAGGATGGAAAAAAGGAACCAAGATCACATTTCCAGATAAAGGCAATGAACAGCCCGGCCAGTTACCTGCAGACCTTGTTTTTGTGATTGATGAGAAGCCCCATGACGTTTACAAGAGAGACAGCAATGACCTCCTCATTACAAAAAAGGTGTCATTAGCTGAGGCATTGGGTGGAACTGCAGTGCATCTCAAAACGCTAGATGGGCGCGACCTATCAATCCCGGTGACTGAAATTGTAAGCCCTGGCTATGAGCTTGTTGTTGCTAGGGAGGGTATGCCAATAGCAAAAGAGCCTGGAAATAGGGGTGATTTGAAGATCAAATTCGAGGTCAGGTTCCCTACAACATTAACCCCGGAACAACGAGCTGGACTTAAACGCACCTTGAAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004713 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010941 GO:0010942 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0031347 GO:0031349 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

338

Amino Acids

36.99

Weight (kDa)

8.82

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	6.7e-29	DnaJ domain
DnaJ_C	PF01556	163 - 321	1.1e-38	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31880
fragaria_vesca	FvH4_5g06700
malus_domestica	MD14G1167300.v1.1 MD14G1167400.v1.1
prunus_persica	Prupe.5G161700_v2.0.a1
pyrus_communis	pycom06g14450 pycom14g13960 pycom14g13970
rosa_chinensis	RchiOBHm_Chr7g0191951 RchiOBHm_Chr7g0191971
rosa_laevigata	RLG00000004413 RLG00000004415
rosa_roxburghii	Rroxscaffold_3G00263400 Rroxscaffold_3G00263440
rosa_rugosa	Rorug06G0511800 Rorug06G0511900
rosa_samantha	Rh7AG122200 Rh7AG122300 Rh7BG123900 Rh7CG126400 Rh7CG126600
rosa_wichuraiana	Rw7G010400 Rw7G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	583
AbsI	CCTCGAGG	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	697
AccB1I	GGYRCC	1 cut(s)	93
AccB7I	CCANNNNNTGG	2 cut(s)	90, 239
AccII	CGCG	1 cut(s)	831
AclI	AACGTT	1 cut(s)	462
AclWI	GGATC	2 cut(s)	170, 289
AcoI	YGGCCR	2 cut(s)	81, 679
AcsI	RAATTY	3 cut(s)	137, 326, 944
AcyI	GRCGYC	1 cut(s)	580
AfaI	GTAC	2 cut(s)	340, 524
AfiI	CCNNNNNNNGG	4 cut(s)	90, 239, 245, 662
AgsI	TTSAA	8 cut(s)	28, 142, 223, 295, 381, 534, 937, 1009
AjnI	CCWGG	5 cut(s)	238, 367, 622, 865, 916
AluBI	AGCT	5 cut(s)	128, 520, 782, 877, 989
AluI	AGCT	5 cut(s)	128, 520, 782, 877, 989
Alw26I	GTCTC	1 cut(s)	735
AlwI	GGATC	2 cut(s)	170, 289
AlwNI	CAGNNNCTG	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	5 cut(s)	81, 132, 156, 364, 679
ApeKI	GCWGC	2 cut(s)	429, 507
ApoI	RAATTY	3 cut(s)	137, 326, 944
ArsI	GACNNNNNNTTYG	6 cut(s)	686, 718, 758, 790, 936, 968
AspLEI	GCGC	2 cut(s)	589, 831
AspS9I	GGNCC	2 cut(s)	365, 390
AsuC2I	CCSGG	3 cut(s)	678, 845, 977
AsuHPI	GGTGA	3 cut(s)	43, 859, 941
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	369
BbvCI	CCTCAGC	2 cut(s)	129, 783
BbvI	GCAGC	2 cut(s)	441, 519
BccI	CCATC	3 cut(s)	389, 621, 818
BciT130I	CCWGG	5 cut(s)	240, 369, 624, 867, 918
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	3 cut(s)	678, 845, 977
BcoDI	GTCTC	1 cut(s)	735
BfaI	CTAG	4 cut(s)	300, 555, 821, 888
BfmI	CTRYAG	3 cut(s)	45, 690, 801
BfoI	RGCGCY	1 cut(s)	590
BfuAI	ACCTGC	1 cut(s)	697
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	2 cut(s)	430, 508
BlsI	GCNGC	2 cut(s)	431, 509
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	8 cut(s)	240, 369, 624, 678, 845, 867, 918, 977
Bme18I	GGWCC	1 cut(s)	390
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	2 cut(s)	365, 390
BmiI	GGNNCC	5 cut(s)	95, 254, 391, 640, 959
BmrFI	CCNGG	8 cut(s)	240, 369, 624, 678, 845, 867, 918, 977
BmsI	GCATC	2 cut(s)	559, 817
BpiI	GAAGAC	1 cut(s)	369
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
Bpu10I	CCTNAGC	2 cut(s)	129, 783
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	3 cut(s)	678, 845, 977
BsaBI	GATNNNNATC	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	580
BsaJI	CCNNGG	3 cut(s)	367, 865, 975
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 239, 245, 662
Bse1I	ACTGG	2 cut(s)	532, 682
Bse3DI	GCAATG	2 cut(s)	673, 754
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	5 cut(s)	240, 369, 624, 867, 918
BseDI	CCNNGG	3 cut(s)	367, 865, 975
BseGI	GGATG	2 cut(s)	411, 632
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	4 cut(s)	90, 239, 245, 662
BseMI	GCAATG	2 cut(s)	673, 754
BseMII	CTCAG	4 cut(s)	120, 144, 194, 774
BseNI	ACTGG	2 cut(s)	532, 682
BseRI	GAGGAG	3 cut(s)	414, 530, 746
BseXI	GCAGC	2 cut(s)	441, 519
Bsh1236I	CGCG	1 cut(s)	831
BshFI	GGCC	5 cut(s)	83, 134, 158, 366, 681
BshNI	GGYRCC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	4 cut(s)	590, 678, 845, 977
BslI	CCNNNNNNNGG	4 cut(s)	90, 239, 245, 662
BsmAI	GTCTC	1 cut(s)	735
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	5 cut(s)	83, 134, 158, 366, 681
BsoBI	CYCGRG	1 cut(s)	512
Bsp1407I	TGTACA	1 cut(s)	522
Bsp143I	GATC	8 cut(s)	55, 147, 175, 199, 281, 446, 645, 939
BspANI	GGCC	5 cut(s)	83, 134, 158, 366, 681
BspCNI	CTCAG	4 cut(s)	121, 145, 193, 775
BspFNI	CGCG	1 cut(s)	831
BspLI	GGNNCC	5 cut(s)	95, 254, 391, 640, 959
BspMAI	CTGCAG	2 cut(s)	694, 805
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	2 cut(s)	170, 289
BspT107I	GGYRCC	1 cut(s)	93
BsrDI	GCAATG	2 cut(s)	673, 754
BsrGI	TGTACA	1 cut(s)	522
BsrI	ACTGG	2 cut(s)	532, 682
BssECI	CCNNGG	3 cut(s)	367, 865, 975
BssMI	GATC	8 cut(s)	55, 147, 175, 199, 281, 446, 645, 939
BssNI	GRCGYC	1 cut(s)	580
Bst2UI	CCWGG	5 cut(s)	240, 369, 624, 867, 918
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	580
BstAUI	TGTACA	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	4 cut(s)	129, 153, 180, 783
BstF5I	GGATG	2 cut(s)	411, 632
BstFNI	CGCG	1 cut(s)	831
BstH2I	RGCGCY	1 cut(s)	590
BstHHI	GCGC	2 cut(s)	589, 831
BstKTI	GATC	8 cut(s)	58, 150, 178, 202, 284, 449, 648, 942
BstMAI	GTCTC	1 cut(s)	735
BstMBI	GATC	8 cut(s)	55, 147, 175, 199, 281, 446, 645, 939
BstMWI	GCNNNNNNNGC	1 cut(s)	826
BstNI	CCWGG	5 cut(s)	240, 369, 624, 867, 918
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	8 cut(s)	238, 367, 622, 676, 843, 865, 916, 975
BstSFI	CTRYAG	3 cut(s)	45, 690, 801
BstUI	CGCG	1 cut(s)	831
BstV1I	GCAGC	2 cut(s)	441, 519
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	5 cut(s)	83, 134, 158, 366, 681
BtsCI	GGATG	2 cut(s)	411, 632
BtsI	GCAGTG	4 cut(s)	277, 283, 492, 810
BtsIMutI	CAGTG	5 cut(s)	277, 283, 492, 525, 810
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	368
CfoI	GCGC	2 cut(s)	589, 831
Cfr13I	GGNCC	2 cut(s)	365, 390
Csp6I	GTAC	2 cut(s)	339, 523
CviAII	CATG	3 cut(s)	85, 229, 725
CviQI	GTAC	2 cut(s)	339, 523
DdeI	CTNAG	4 cut(s)	129, 153, 180, 783
DpnI	GATC	8 cut(s)	57, 149, 177, 201, 283, 448, 647, 941
DpnII	GATC	8 cut(s)	55, 147, 175, 199, 281, 446, 645, 939
EaeI	YGGCCR	2 cut(s)	81, 679
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco147I	AGGCCT	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	5 cut(s)	238, 367, 622, 865, 916
EcoRV	GATATC	1 cut(s)	316
FaeI	CATG	3 cut(s)	88, 232, 728
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FatI	CATG	3 cut(s)	84, 228, 724
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	430, 508
FokI	GGATG	2 cut(s)	418, 639
Fsp4HI	GCNGC	2 cut(s)	430, 508
FspBI	CTAG	4 cut(s)	300, 555, 821, 888
GlaI	GCGC	2 cut(s)	588, 830
GluI	GCNGC	2 cut(s)	430, 508
HaeII	RGCGCY	1 cut(s)	590
HaeIII	GGCC	5 cut(s)	83, 134, 158, 366, 681
HapII	CCGG	4 cut(s)	590, 678, 845, 977
HhaI	GCGC	2 cut(s)	589, 831
Hin1I	GRCGYC	1 cut(s)	580
Hin1II	CATG	3 cut(s)	88, 232, 728
Hin6I	GCGC	2 cut(s)	587, 829
HinP1I	GCGC	2 cut(s)	587, 829
HinfI	GANTC	2 cut(s)	106, 291
HpaII	CCGG	4 cut(s)	590, 678, 845, 977
HphI	GGTGA	3 cut(s)	43, 859, 941
Hpy166II	GTNNAC	2 cut(s)	525, 733
Hpy188I	TCNGA	3 cut(s)	154, 183, 394
Hpy188III	TCNNGA	3 cut(s)	169, 381, 656
Hpy8I	GTNNAC	2 cut(s)	525, 733
HpyAV	CCTTC	3 cut(s)	22, 69, 209
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4IV	ACGT	3 cut(s)	462, 580, 729
HpyCH4V	TGCA	7 cut(s)	308, 323, 507, 572, 692, 803, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	826
HpyF3I	CTNAG	4 cut(s)	129, 153, 180, 783
HpySE526I	ACGT	3 cut(s)	462, 580, 729
Hsp92I	GRCGYC	1 cut(s)	580
Hsp92II	CATG	3 cut(s)	88, 232, 728
HspAI	GCGC	2 cut(s)	587, 829
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	8 cut(s)	55, 147, 175, 199, 281, 446, 645, 939
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	2 cut(s)	441, 519
LweI	GCATC	2 cut(s)	559, 817
MaeI	CTAG	4 cut(s)	300, 555, 821, 888
MaeII	ACGT	3 cut(s)	462, 580, 729
MaeIII	GTNAC	3 cut(s)	463, 684, 847
MalI	GATC	8 cut(s)	57, 149, 177, 201, 283, 448, 647, 941
MboI	GATC	8 cut(s)	55, 147, 175, 199, 281, 446, 645, 939
MboII	GAAGA	4 cut(s)	62, 196, 369, 949
MflI	RGATCY	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	4 cut(s)	137, 326, 855, 944
MluNI	TGGCCA	1 cut(s)	83
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	2 cut(s)	971, 996
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	4 cut(s)	590, 678, 845, 977
MspR9I	CCNGG	8 cut(s)	240, 369, 624, 678, 845, 867, 918, 977
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	5 cut(s)	240, 369, 624, 867, 918
MvnI	CGCG	1 cut(s)	831
MwoI	GCNNNNNNNGC	1 cut(s)	826
NciI	CCSGG	3 cut(s)	678, 845, 977
NdeII	GATC	8 cut(s)	55, 147, 175, 199, 281, 446, 645, 939
NlaIII	CATG	3 cut(s)	88, 232, 728
NlaIV	GGNNCC	5 cut(s)	95, 254, 391, 640, 959
NmuCI	GTSAC	1 cut(s)	847
NspI	RCATGY	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	158
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	2 cut(s)	106, 291
PflMI	CCANNNNNTGG	2 cut(s)	90, 239
PkrI	GCNGC	2 cut(s)	431, 509
Psp1406I	AACGTT	1 cut(s)	462
Psp6I	CCWGG	5 cut(s)	238, 367, 622, 865, 916
PspGI	CCWGG	5 cut(s)	238, 367, 622, 865, 916
PspN4I	GGNNCC	5 cut(s)	95, 254, 391, 640, 959
PspPI	GGNCC	2 cut(s)	365, 390
PspXI	VCTCGAGB	1 cut(s)	512
PstI	CTGCAG	2 cut(s)	694, 805
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	2 cut(s)	340, 524
RsaNI	GTAC	2 cut(s)	339, 523
SaqAI	TTAA	2 cut(s)	971, 996
SatI	GCNGC	2 cut(s)	430, 508
Sau3AI	GATC	8 cut(s)	55, 147, 175, 199, 281, 446, 645, 939
Sau96I	GGNCC	2 cut(s)	365, 390
ScaI	AGTACT	1 cut(s)	340
ScrFI	CCNGG	8 cut(s)	240, 369, 624, 678, 845, 867, 918, 977
SfaNI	GCATC	2 cut(s)	559, 817
SfcI	CTRYAG	3 cut(s)	45, 690, 801
Sfr274I	CTCGAG	1 cut(s)	512
SinI	GGWCC	1 cut(s)	390
SlaI	CTCGAG	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	169, 512
SmoI	CTYRAG	2 cut(s)	169, 512
Sse9I	AATT	4 cut(s)	137, 326, 855, 944
SseBI	AGGCCT	1 cut(s)	158
SspMI	CTAG	4 cut(s)	300, 555, 821, 888
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	8 cut(s)	238, 367, 622, 676, 843, 865, 916, 975
TaaI	ACNGT	1 cut(s)	562
TaiI	ACGT	3 cut(s)	465, 583, 732
TaqI	TCGA	3 cut(s)	445, 513, 948
TasI	AATT	4 cut(s)	137, 326, 855, 944
TatI	WGTACW	2 cut(s)	338, 522
TfiI	GAWTC	2 cut(s)	106, 291
Tru1I	TTAA	2 cut(s)	971, 996
Tru9I	TTAA	2 cut(s)	971, 996
TscAI	CASTG	5 cut(s)	277, 283, 492, 532, 810
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	2 cut(s)	429, 507
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	3 cut(s)	101, 560, 684
TspRI	CASTG	5 cut(s)	277, 283, 492, 532, 810
Van91I	CCANNNNNTGG	2 cut(s)	90, 239
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	3 cut(s)	137, 326, 944
XceI	RCATGY	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	512
XspI	CTAG	4 cut(s)	300, 555, 821, 888
ZraI	GACGTC	1 cut(s)	581
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.