Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008551

Physical Location & Seq

Genomic Coordinates Reverse (-)

26024524 .. 26025114

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1167400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAAATCATCAAGATTTCAGCAACCAATGTGCCAAAACGTTACATTTTGGCTGAGAATACAAGCACAAAAGGCCACAATAACACCACAGCTGCTGCTAATGCTCAAGCTCCAACTAACACTTTAGCTCCAGGTCCATCTGCAACACCGAAGCAGAAGAAGAATAACAAGAAGGTAGGAGGGTGGCTGCTCGGGTTTTTTGCCAGAGTACTGGGCGGAAGGGTATCCGGGTTCATCTTTTCTCTACTTTTTAAGCTGCTCTTAGTCGTGGTAAAAGGTGTCGGCAAAGACGACGGTCCTGCGATTTTCAGTTCTATGATCAAAAGGAAAAAAGACTTGGCTTTCCTAGAAAAAGAAGATAGCTTGGTTAATTTGGAATTCATAGGATGGCGTGGAGGTGGAGACGTTTATAAAGCCGAGTTGCCAGGAAGCAACAGCAAAATTATTGCTATAAAAAAGATAGTGCAACCCCATAAAGATACCGATGAACTGATCGCTGAAGAGGAAAGTAAGTTTATGAACAATAAGATGCGTGAAATCCGATCAACATTGTGGGGAAAATTAGGCACCGAAATCTTGTTCCTCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004713 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010941 GO:0010942 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0031347 GO:0031349 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

197

Amino Acids

21.5

Weight (kDa)

9.87

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31880
fragaria_vesca	FvH4_5g06700
malus_domestica	MD14G1167300.v1.1 MD14G1167400.v1.1
prunus_persica	Prupe.5G161700_v2.0.a1
pyrus_communis	pycom06g14450 pycom14g13960 pycom14g13970
rosa_chinensis	RchiOBHm_Chr7g0191951 RchiOBHm_Chr7g0191971
rosa_laevigata	RLG00000004413 RLG00000004415
rosa_roxburghii	Rroxscaffold_3G00263400 Rroxscaffold_3G00263440
rosa_rugosa	Rorug06G0511800 Rorug06G0511900
rosa_samantha	Rh7AG122200 Rh7AG122300 Rh7BG123900 Rh7CG126400 Rh7CG126600
rosa_wichuraiana	Rw7G010400 Rw7G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	566
AciI	CCGC	1 cut(s)	216
AclI	AACGTT	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	1 cut(s)	210
AjnI	CCWGG	2 cut(s)	130, 424
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	5 cut(s)	92, 110, 128, 256, 363
AluI	AGCT	5 cut(s)	92, 110, 128, 256, 363
Alw26I	GTCTC	1 cut(s)	396
AlwNI	CAGNNNCTG	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	4 cut(s)	92, 95, 187, 256
ApoI	RAATTY	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	134, 296
AsuC2I	CCSGG	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	134, 296
BanI	GGYRCC	1 cut(s)	566
BbvI	GCAGC	4 cut(s)	79, 82, 174, 243
BccI	CCATC	2 cut(s)	145, 381
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	2 cut(s)	132, 426
BciVI	GTATCC	1 cut(s)	235
BclI	TGATCA	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	2 cut(s)	347, 589
BfuI	GTATCC	1 cut(s)	235
BisI	GCNGC	4 cut(s)	93, 96, 188, 257
BlsI	GCNGC	4 cut(s)	94, 97, 189, 258
BmcAI	AGTACT	1 cut(s)	210
Bme1390I	CCNGG	3 cut(s)	132, 229, 426
Bme18I	GGWCC	2 cut(s)	134, 296
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	134, 296
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	3 cut(s)	132, 229, 426
BmrI	ACTGGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	519
BmuI	ACTGGG	1 cut(s)	221
BoxI	GACNNNNGTC	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bse1I	ACTGG	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	132, 426
BseGI	GGATG	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	4 cut(s)	79, 82, 174, 243
BshFI	GGCC	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	566
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	396
BsmBI	CGTCTC	1 cut(s)	396
BsnI	GGCC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	318, 492, 542
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	568
BspT107I	GGYRCC	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	318, 492, 542
Bst2UI	CCWGG	2 cut(s)	132, 426
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	495
BstDEI	CTNAG	2 cut(s)	54, 262
BstF5I	GGATG	1 cut(s)	392
BstKTI	GATC	3 cut(s)	321, 495, 545
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	3 cut(s)	318, 492, 542
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 101
BstNI	CCWGG	2 cut(s)	132, 426
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSCI	CCNGG	3 cut(s)	130, 227, 424
BstV1I	GCAGC	4 cut(s)	79, 82, 174, 243
BstXI	CCANNNNNNTGG	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	392
CaiI	CAGNNNCTG	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	134, 296
Csp6I	GTAC	1 cut(s)	209
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	2 cut(s)	54, 262
DpnI	GATC	3 cut(s)	320, 494, 544
DpnII	GATC	3 cut(s)	318, 492, 542
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
EciI	GGCGGA	1 cut(s)	231
Eco47I	GGWCC	2 cut(s)	134, 296
Eco57I	CTGAAG	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	130, 424
Esp3I	CGTCTC	1 cut(s)	396
FaiI	YATR	6 cut(s)	317, 383, 411, 452, 474, 518
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	4 cut(s)	93, 96, 188, 257
FokI	GGATG	1 cut(s)	399
Fsp4HI	GCNGC	4 cut(s)	93, 96, 188, 257
FspBI	CTAG	2 cut(s)	347, 589
GluI	GCNGC	4 cut(s)	93, 96, 188, 257
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	228
HpaII	CCGG	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	542
Hpy188III	TCNNGA	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	2 cut(s)	166, 213
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	2 cut(s)	40, 405
HpyCH4V	TGCA	2 cut(s)	143, 466
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 101
HpyF3I	CTNAG	2 cut(s)	54, 262
HpySE526I	ACGT	2 cut(s)	40, 405
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	318, 492, 542
LmnI	GCTCC	2 cut(s)	115, 133
LpnPI	CCDG	8 cut(s)	117, 144, 197, 217, 241, 312, 411, 438
Lsp1109I	GCAGC	4 cut(s)	79, 82, 174, 243
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	2 cut(s)	347, 589
MaeII	ACGT	2 cut(s)	40, 405
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	3 cut(s)	320, 494, 544
MboI	GATC	3 cut(s)	318, 492, 542
MboII	GAAGA	4 cut(s)	169, 172, 368, 512
MluCI	AATT	4 cut(s)	370, 377, 441, 560
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	3 cut(s)	173, 389, 496
MseI	TTAA	2 cut(s)	252, 369
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	3 cut(s)	132, 229, 426
MvaI	CCWGG	2 cut(s)	132, 426
MwoI	GCNNNNNNNGC	2 cut(s)	72, 101
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	3 cut(s)	318, 492, 542
NlaIV	GGNNCC	1 cut(s)	568
NmeAIII	GCCGAG	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PkrI	GCNGC	4 cut(s)	94, 97, 189, 258
PshAI	GACNNNNGTC	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	411
Psp1406I	AACGTT	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	130, 424
PspGI	CCWGG	2 cut(s)	130, 424
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	2 cut(s)	134, 296
PstNI	CAGNNNCTG	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	252, 369
SatI	GCNGC	4 cut(s)	93, 96, 188, 257
Sau3AI	GATC	3 cut(s)	318, 492, 542
Sau96I	GGNCC	2 cut(s)	134, 296
ScaI	AGTACT	1 cut(s)	210
ScrFI	CCNGG	3 cut(s)	132, 229, 426
SfaNI	GCATC	1 cut(s)	519
SinI	GGWCC	2 cut(s)	134, 296
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	4 cut(s)	370, 377, 441, 560
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	2 cut(s)	347, 589
StyD4I	CCNGG	3 cut(s)	130, 227, 424
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	2 cut(s)	43, 408
TasI	AATT	4 cut(s)	370, 377, 441, 560
TatI	WGTACW	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	252, 369
Tru9I	TTAA	2 cut(s)	252, 369
TseI	GCWGC	4 cut(s)	92, 95, 187, 256
TspDTI	ATGAA	5 cut(s)	17, 223, 370, 501, 533
VpaK11BI	GGWCC	2 cut(s)	134, 296
XapI	RAATTY	1 cut(s)	377
XspI	CTAG	2 cut(s)	347, 589
ZrmI	AGTACT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.