Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008732

Physical Location & Seq

Genomic Coordinates Reverse (-)

2741775 .. 2744856

Gene Structure 3082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1039100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCGAGGCGGTGGACGAGGAGAGCGTGCGGAAGTTCGTGGCGGCTTACTTGAAGAAGAAAGGCTTCAAGCAGACCGAGAACGCTTTTCAAGACGAACTAAACAAGAATGCCAACAGCTCTTGGTCCCCGATTTCTTTCAATTCCAAATTGGGCTCCGACGTCGCCAAGCACATCCTATCCTTCTCTCAATATGAGGAAGGTCCAGCACAGTACCAAGATGCATATGCCAAGTTGAGGTCGTGGACTTACAGTTCACTAGATTTGTACAGGCATGAGTTGCTTCGTGTTCTCTATCCAGTATTTATTCATTGTTTTATGGATCTGGTTGCTAAAGGTCATAATCAAGAAGCTCGGACATTTTTCAACAGCTTCCGTGAAAAACACGAAATGATGCACCAACGAGATCTACAGAAGTTGGAAGGCGTTCTTTCTCCCTCTCATTTGGAGGAGATGGAATTCGCTCATTCTCTTAGGCAGAGCAAAGTCAACATAAAGATATGCCAATACTCGTATGAGCTTCTGCTGCAGTTTCTACACAAGTCGCAGTCCGCCACAGTGCTTGGGATTATCAATGAGCATATTAACTTCCAAGTTTCTCCTGGACAACCCAGTTCAATTTCTGATGATGCTGAGGCTCTAACACTTACCGGAAGTAGCCTGGATTCAGCTAATCAGATAAACCAGAAGGAAATACATTGGGGGTTGCTCGAAGATTCCTTGGAAGAACGCTTGGACAAGGCTGGGGCCTTAGACTCTGAAAGGGCAGAAGGAGAAAGCAAAGAAGGGGACGGGGATGAGAATAAGAAAAAATTAAGTGAAGGAGCTAAACAGGGGGCTTCGAACAAAAAGTTGAAAAAGGACAAGGCTGCTGATGCAGCGAAAAGCGCACGCCCTGAGGCAACCCCTGTAACTGCAGTACCAAGAGTCAAACCAGAGCTTACTTTGCCAGTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0005856 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0015629 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031248 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033276 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID_NTD2 WD40

Protein Analysis

320

Amino Acids

35.89

Weight (kDa)

6.03

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID_NTD2	PF04494	67 - 195	9.5e-47	WD40 associated region in TFIID subunit, NTD2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25150 AT5G25150
fragaria_vesca	FvH4_2g41020 FvH4_2g41020 FvH4_2g41020 FvH4_2g41020 FvH4_2g41020
malus_domestica	MD00G1143300.v1.1 MD15G1039100.v1.1
prunus_persica	Prupe.1G392800_v2.0.a1 Prupe.1G392800_v2.0.a1
pyrus_communis	pycom08g04780
rosa_chinensis	RchiOBHm_Chr6g0299541
rosa_laevigata	RLG00000011417
rosa_multiflora	Rmu_sc0004064.1_g000008
rosa_roxburghii	Rroxscaffold_7G00168570
rosa_rugosa	Rorug06G0289700 Rorug06G0289800 Rorug06G0289900 Rorug06G0289900
rosa_samantha	Rh6AG401100 Rh6DG402200
rosa_wichuraiana	Rw6G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AciI	CCGC	4 cut(s)	11, 31, 44, 552
AclWI	GGATC	1 cut(s)	330
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	3 cut(s)	215, 269, 921
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	7 cut(s)	55, 70, 92, 142, 367, 618, 856
AjnI	CCWGG	2 cut(s)	601, 660
AloI	GAACNNNNNNTCC	2 cut(s)	238, 270
AluBI	AGCT	7 cut(s)	120, 353, 372, 520, 671, 827, 940
AluI	AGCT	7 cut(s)	120, 353, 372, 520, 671, 827, 940
AlwI	GGATC	1 cut(s)	330
AoxI	GGCC	2 cut(s)	3, 747
ApeKI	GCWGC	3 cut(s)	526, 869, 878
ApoI	RAATTY	1 cut(s)	458
Asp700I	GAANNNNTTC	2 cut(s)	65, 426
AspLEI	GCGC	1 cut(s)	890
AspS9I	GGNCC	3 cut(s)	126, 203, 747
AsuII	TTCGAA	1 cut(s)	842
AvaII	GGWCC	2 cut(s)	126, 203
AxyI	CCTNAGG	1 cut(s)	897
BaeI	ACNNNNGTAYC	2 cut(s)	903, 936
BanII	GRGCYC	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	3 cut(s)	513, 856, 890
BccI	CCATC	1 cut(s)	448
BciT130I	CCWGG	2 cut(s)	603, 662
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	3 cut(s)	410, 527, 915
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	4 cut(s)	45, 527, 870, 879
BlsI	GCNGC	4 cut(s)	46, 528, 871, 880
Bme1390I	CCNGG	2 cut(s)	603, 662
Bme18I	GGWCC	2 cut(s)	126, 203
BmgT120I	GGNCC	3 cut(s)	126, 203, 747
BmiI	GGNNCC	3 cut(s)	128, 157, 748
BmrFI	CCNGG	2 cut(s)	603, 662
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	4 cut(s)	211, 384, 619, 865
BmuI	ACTGGG	1 cut(s)	606
Bpu10I	CCTNAGC	1 cut(s)	633
Bpu14I	TTCGAA	1 cut(s)	842
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	6, 720
BsaWI	WCCGGW	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	3 cut(s)	299, 612, 950
Bse21I	CCTNAGG	1 cut(s)	897
BseBI	CCWGG	2 cut(s)	603, 662
BseDI	CCNNGG	2 cut(s)	6, 720
BseGI	GGATG	2 cut(s)	174, 802
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	624, 888
BseNI	ACTGG	3 cut(s)	299, 612, 950
BseRI	GAGGAG	2 cut(s)	35, 464
BseXI	GCAGC	3 cut(s)	513, 856, 890
BseYI	CCCAGC	1 cut(s)	743
BshFI	GGCC	2 cut(s)	5, 749
BsiSI	CCGG	1 cut(s)	651
BslFI	GGGAC	2 cut(s)	112, 803
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmFI	GGGAC	2 cut(s)	112, 803
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	5, 749
Bsp119I	TTCGAA	1 cut(s)	842
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp1407I	TGTACA	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	322, 406
BspACI	CCGC	4 cut(s)	11, 31, 44, 552
BspANI	GGCC	2 cut(s)	5, 749
BspCNI	CTCAG	2 cut(s)	625, 889
BspLI	GGNNCC	3 cut(s)	128, 157, 748
BspMAI	CTGCAG	2 cut(s)	531, 919
BspPI	GGATC	1 cut(s)	330
BspT104I	TTCGAA	1 cut(s)	842
BsrGI	TGTACA	1 cut(s)	267
BsrI	ACTGG	3 cut(s)	299, 612, 950
BssECI	CCNNGG	2 cut(s)	6, 720
BssMI	GATC	2 cut(s)	322, 406
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	603, 662
Bst4CI	ACNGT	3 cut(s)	213, 254, 559
BstACI	GRCGYC	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	280
BstAUI	TGTACA	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	842
BstC8I	GCNNGC	2 cut(s)	29, 892
BstDEI	CTNAG	4 cut(s)	473, 633, 751, 897
BstF5I	GGATG	2 cut(s)	174, 802
BstHHI	GCGC	1 cut(s)	890
BstKTI	GATC	2 cut(s)	325, 409
BstMBI	GATC	2 cut(s)	322, 406
BstMWI	GCNNNNNNNGC	6 cut(s)	280, 526, 875, 878, 887, 946
BstNI	CCWGG	2 cut(s)	603, 662
BstSCI	CCNGG	2 cut(s)	601, 660
BstSFI	CTRYAG	3 cut(s)	410, 527, 915
BstV1I	GCAGC	3 cut(s)	513, 856, 890
BstX2I	RGATCY	2 cut(s)	322, 406
BstYI	RGATCY	2 cut(s)	322, 406
Bsu36I	CCTNAGG	1 cut(s)	897
BsuRI	GGCC	2 cut(s)	5, 749
BtsCI	GGATG	2 cut(s)	174, 802
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	2 cut(s)	29, 892
CfoI	GCGC	1 cut(s)	890
Cfr13I	GGNCC	3 cut(s)	126, 203, 747
Csp6I	GTAC	3 cut(s)	214, 268, 920
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	1 cut(s)	275
CviQI	GTAC	3 cut(s)	214, 268, 920
DdeI	CTNAG	4 cut(s)	473, 633, 751, 897
DpnI	GATC	2 cut(s)	324, 408
DpnII	GATC	2 cut(s)	322, 406
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	541
Eco130I	CCWWGG	1 cut(s)	720
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	126, 203
Eco81I	CCTNAGG	1 cut(s)	897
EcoO109I	RGGNCCY	1 cut(s)	747
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	601, 660
EcoT14I	CCWWGG	1 cut(s)	720
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	1 cut(s)	278
FalI	AAGNNNNNCTT	4 cut(s)	50, 82, 414, 446
FaqI	GGGAC	2 cut(s)	112, 803
FatI	CATG	1 cut(s)	274
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	4 cut(s)	45, 527, 870, 879
FokI	GGATG	2 cut(s)	161, 809
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	4 cut(s)	45, 527, 870, 879
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	889
GluI	GCNGC	4 cut(s)	45, 527, 870, 879
GsaI	CCCAGC	1 cut(s)	747
HaeIII	GGCC	2 cut(s)	5, 749
HapII	CCGG	1 cut(s)	651
HhaI	GCGC	1 cut(s)	890
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	888
HinP1I	GCGC	1 cut(s)	888
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	4 cut(s)	665, 716, 755, 927
HpaII	CCGG	1 cut(s)	651
Hpy166II	GTNNAC	4 cut(s)	16, 246, 257, 490
Hpy188I	TCNGA	5 cut(s)	160, 357, 625, 678, 760
Hpy188III	TCNNGA	2 cut(s)	92, 347
Hpy8I	GTNNAC	4 cut(s)	16, 246, 257, 490
Hpy99I	CGWCG	2 cut(s)	164, 167
HpyAV	CCTTC	7 cut(s)	193, 194, 416, 682, 764, 779, 815
HpyCH4III	ACNGT	3 cut(s)	213, 254, 559
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	5 cut(s)	224, 397, 529, 878, 917
HpyF10VI	GCNNNNNNNGC	6 cut(s)	280, 526, 875, 878, 887, 946
HpyF3I	CTNAG	4 cut(s)	473, 633, 751, 897
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	888
Kzo9I	GATC	2 cut(s)	322, 406
LmnI	GCTCC	2 cut(s)	161, 824
Lsp1109I	GCAGC	3 cut(s)	513, 856, 890
LweI	GCATC	4 cut(s)	211, 384, 619, 865
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	910
MalI	GATC	2 cut(s)	324, 408
MboI	GATC	2 cut(s)	322, 406
MboII	GAAGA	4 cut(s)	67, 70, 725, 737
MflI	RGATCY	2 cut(s)	322, 406
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	5 cut(s)	142, 149, 458, 618, 812
MlyI	GAGTC	2 cut(s)	749, 936
MmeI	TCCRAC	2 cut(s)	183, 399
MnlI	CCTC	7 cut(s)	13, 190, 231, 442, 448, 628, 892
Mph1103I	ATGCAT	1 cut(s)	226
MroXI	GAANNNNTTC	2 cut(s)	65, 426
MseI	TTAA	2 cut(s)	585, 815
MspI	CCGG	1 cut(s)	651
MspR9I	CCNGG	2 cut(s)	603, 662
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	2 cut(s)	603, 662
MwoI	GCNNNNNNNGC	6 cut(s)	280, 526, 875, 878, 887, 946
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	2 cut(s)	322, 406
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	3 cut(s)	128, 157, 748
NmeAIII	GCCGAG	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	842
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	1 cut(s)	115
PdmI	GAANNNNTTC	2 cut(s)	65, 426
PfeI	GAWTC	2 cut(s)	665, 716
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	4 cut(s)	46, 528, 871, 880
PleI	GAGTC	2 cut(s)	749, 935
PpsI	GAGTC	2 cut(s)	749, 935
Psp6I	CCWGG	2 cut(s)	601, 660
PspFI	CCCAGC	1 cut(s)	743
PspGI	CCWGG	2 cut(s)	601, 660
PspN4I	GGNNCC	3 cut(s)	128, 157, 748
PspPI	GGNCC	3 cut(s)	126, 203, 747
PstI	CTGCAG	2 cut(s)	531, 919
PsuI	RGATCY	2 cut(s)	322, 406
RsaI	GTAC	3 cut(s)	215, 269, 921
RsaNI	GTAC	3 cut(s)	214, 268, 920
SaqAI	TTAA	2 cut(s)	585, 815
SatI	GCNGC	4 cut(s)	45, 527, 870, 879
Sau3AI	GATC	2 cut(s)	322, 406
Sau96I	GGNCC	3 cut(s)	126, 203, 747
SchI	GAGTC	2 cut(s)	749, 936
ScrFI	CCNGG	2 cut(s)	603, 662
SduI	GDGCHC	1 cut(s)	158
SfaNI	GCATC	4 cut(s)	211, 384, 619, 865
SfcI	CTRYAG	3 cut(s)	410, 527, 915
SfuI	TTCGAA	1 cut(s)	842
SinI	GGWCC	2 cut(s)	126, 203
Sse9I	AATT	5 cut(s)	142, 149, 458, 618, 812
SsiI	CCGC	4 cut(s)	11, 31, 44, 552
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	601, 660
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	3 cut(s)	213, 254, 559
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	711, 842
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	5 cut(s)	142, 149, 458, 618, 812
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	665, 716
Tru1I	TTAA	2 cut(s)	585, 815
Tru9I	TTAA	2 cut(s)	585, 815
TscAI	CASTG	1 cut(s)	564
TseI	GCWGC	3 cut(s)	526, 869, 878
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	564
VpaK11BI	GGWCC	2 cut(s)	126, 203
XapI	RAATTY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XmnI	GAANNNNTTC	2 cut(s)	65, 426
XspI	CTAG	1 cut(s)	260
ZraI	GACGTC	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.