Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008732

Physical Location & Seq

Genomic Coordinates Reverse (-)

9289506 .. 9295064

Gene Structure 5559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011417

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGGACGAGGAGAAGCTTCAGAAATTCGTGGAAGCCTACTTGAAGAAGAAAGGGCTCAAGTTAACGGAGCACGCTCTCCAAGAAGAACTTCAGCAATCCACCAATACTTCTTCCTCCCCGGTCTCTCAATTCGACCCCGACGTCGTCAGGCAAATCCTCGCCTTCTCCGAATTTGAGGATGGTCCAGCACGTTACCAAGTTGGATATGCCAAGTTGAGGTCATGGACTTATACTTCTCTGGATTTGTACAGGCATGAGTTGCTTCGTGTTCTTTATCCGGTATTCATTCATTGTTTCATGGATCTGGTTGCTAAAGGTCATATTCAAGAAGCTCGGACATTTTTCAATAGCTTCCGTGAAGACCATGAAATGATGCACCTACGAGATCTACAGAAGTTGGAAGGAGTTCTTTCTCCCTCTCATTTAGAGGAGATGGAATTTGCTCATTCTCTTAGGCAGAGCAAAGTGAACATAAAGATATGTCAGTACTCCTATGAGCTTCTGCTACAGTTTTTGCACAAGTCACAGTCCACCACAATGCTTGGGATTATCAATGAGCATATTAATTTCCAAGTTTCTCCTGGACAACCTAGCTCAATTACTGATGATGCTGAGGCTGTAACACTTACTGGAGGCTGCCAGGAGTCGGCTAATCAAATAAACCAGAAGGAAATTCATTGGGGGTTGCTTGAAGATTCCTTGGAAGAACGCTTGGAAAAGGCCGGGGGAATGGCTCTAGATTCTGAAAAAGCAGAAGGGGAAACCAAAGAAGGGGAGGGTGATGAAAATAAGAAAAAATCAATTGAAGGAGGTAAACAGGGTGCTTCAATCAAAAAGCAAAAAAAGGACAAGGCTGTTAGTGCAACAGTGAAAAGTGCACGCCCCGAGGCAACCACTGTACCTACAGCACCACGAGTCAAACCAGAACTTACTTTGCCAGTAATTCCAACAGAAGTTGAACAGTCTATTCTTGAGGACTTGAGAAACCGTGTACAGTTGAGTAGTGCTGCGTTGCCATCTGTCAGCTTTTATACATTTATCAACACACACAATGGGTTAAACTGTTCATCTATATCCCCTGATGGATCCCTGGTTGCTGGTGGATTTTCTGACTCGTCGCTGAAGGTCTGGGATATGGCAAAGATTGGGCAACAATCTGTTGGTTCAATTCTGCAGGGTGAAAATGGTACCGCTTCAAGTGAACAAGTTGCTGGATCAAATGGCGGGAAAAGGCCATATACATTGTTTCAGGGTCATTCAGGGCCAGTTTATTCTGCTACTTTCAATCCTCTGGGTGATTTTATACTTTCCTCTTCAGCAGACTCAACTATTCGGTTGTGGAGCACAAACCTAAATGCCAATCTTGTTTGCTACAAGGGTCATAACTACCCTGTATGGGATGTTCAGTTTAGCCCAGTAGGTCATTATTTTGCCAGTGCATCACATGATAGAACAGCAAGAATTTGGTCTATGGACAGAATACAGCCTCTGAGAATAATGGCAGGGCACTTATCTGATGTAGATTGTGTACAATGGCATTCCAACTGCAACTACATTGCAACTGGTTCTAGTGACAAAACAGTTAGATTATGGGACGTGCAGAGTGGAGAGTGTGTCCGAATATTCATTGGCCACAGGAGTATGATTTTATCTCTTGCAATGTCACCTGATGGTCGGTACATGGCTTCGGGTGATGAAGATGGCTCAATCATGATGTGGGATCTTTCAAGTGGCCGCTGCGTTACACCTTTGATGGGTCATACCTCTTGCGTATGGACATTGGCTTTCAGTGGTGAAGGTTCACTCCTTGCTTCTGGATCTGCTGATTGCACGGTAAAATTATGGGACGTAACTGCAAGTACAAAGTTGCCAAAAGCTGAAGAAAAAAGTGGAAGTGCTAGCAGACTGAGGTCATTGAAGACTTTACCAACCAAGTGTACGCCTGTCTACTCCTTACGGTTTTCTCGAAGGAATCTTTTGTTTGCAGCCGGGGTCCTTTCAAAAACTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0005856 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0015629 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031248 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033276 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID_NTD2 WD40

Protein Analysis

671

Amino Acids

74.02

Weight (kDa)

6.23

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID_NTD2	PF04494	60 - 188	6.9e-45	WD40 associated region in TFIID subunit, NTD2 domain
Beta-prop_WDR5	PF25175	346 - 465	4.3e-10	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	346 - 533	1.2e-25	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	351 - 492	2.6e-10	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	399 - 615	2.2e-12	WDR36/Utp21 first beta-propeller
WD40	PF00400	413 - 448	9.5e-09	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	414 - 492	4.8e-15	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	414 - 532	3.2e-18	WDR3 second beta-propeller domain
WD40_Gbeta	PF25391	414 - 493	1.9e-06	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	414 - 575	1.5e-15	TEP-1 second beta-propeller
WD40_Prp19	PF24814	414 - 575	2.9e-34	Prp19 WD40 domain
EIF3I	PF24805	415 - 492	1.7e-10	EIF3I
Beta-prop_WDR36-Utp21_2nd	PF25168	415 - 484	3.4e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_IFT122_1st	PF23381	416 - 560	8.8e-07	IFT122 first beta-propeller
Beta-prop_EML_2	PF23414	421 - 520	4.2e-07	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	423 - 579	1.8e-14	WDR55
WD40	PF00400	457 - 490	1e-08	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	459 - 622	4.2e-47	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	461 - 540	8.3e-20	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	461 - 626	3e-27	CDC20/Fizzy WD40 domain
WDR90_beta-prop_4th	PF23342	465 - 581	7.3e-08	WDR90, 4th beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	465 - 575	1.2e-14	MABP1/WDR62 second WD40 domain
Beta-prop_WDR19_1st	PF23389	473 - 624	4.2e-09	WDR19 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	477 - 580	4.2e-13	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	483 - 564	5e-10	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	484 - 582	5.3e-23	THOC3 beta-propeller domain
WD40	PF00400	495 - 532	3.8e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	497 - 582	3.5e-10	CAF1B/HIR1 beta-propeller domain
WD40_Gbeta	PF25391	498 - 623	1.6e-21	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	505 - 582	8.5e-15	WDHD1 first WD40 domain
Beta-prop_IFT140_1st	PF23383	505 - 576	1.2e-07	IFT140 first beta-propeller
Beta-prop_WDR3_2nd	PF25172	509 - 618	5.5e-20	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	515 - 635	1.2e-15	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_SCAP	PF24017	519 - 627	6.8e-09	SCAP Beta-propeller
Beta-prop_WDR3_1st	PF25173	527 - 631	1.8e-26	WDR3 first beta-propeller domain
WD40	PF00400	536 - 574	3.3e-10	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	536 - 629	1.1e-19	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	540 - 623	1.8e-09	TEP-1 second beta-propeller
WD40_MABP1-WDR62_1st	PF24780	541 - 619	6.3e-06	MABP1/WDR62 first WD40 domain
EIF3I	PF24805	544 - 630	1.7e-07	EIF3I
Beta-prop_EML	PF23409	544 - 620	2e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	550 - 616	2.8e-07	MABP1/WDR62 second WD40 domain
Beta-prop_WDR5	PF25175	551 - 623	2e-18	WDR5 beta-propeller domain
WD40_Prp19	PF24814	556 - 623	2e-14	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	561 - 666	9.6e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	566 - 621	2.5e-06	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	578 - 616	5.5e-11	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

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Orthologous Genes (Group: OG0008732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25150 AT5G25150
fragaria_vesca	FvH4_2g41020 FvH4_2g41020 FvH4_2g41020 FvH4_2g41020 FvH4_2g41020
malus_domestica	MD00G1143300.v1.1 MD15G1039100.v1.1
prunus_persica	Prupe.1G392800_v2.0.a1 Prupe.1G392800_v2.0.a1
pyrus_communis	pycom08g04780
rosa_chinensis	RchiOBHm_Chr6g0299541
rosa_laevigata	RLG00000011417
rosa_multiflora	Rmu_sc0004064.1_g000008
rosa_roxburghii	Rroxscaffold_7G00168570
rosa_rugosa	Rorug06G0289700 Rorug06G0289800 Rorug06G0289900 Rorug06G0289900
rosa_samantha	Rh6AG401100 Rh6DG402200
rosa_wichuraiana	Rw6G035100

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AatII	GACGTC	1 cut(s)	144
Acc65I	GGTACC	1 cut(s)	1187
AccB1I	GGYRCC	1 cut(s)	1187
AccI	GTMKAC	1 cut(s)	1947
AciI	CCGC	3 cut(s)	1191, 1224, 1735
AclWI	GGATC	6 cut(s)	309, 1080, 1093, 1222, 1728, 1825
AcoI	YGGCCR	2 cut(s)	1630, 1732
AcsI	RAATTY	5 cut(s)	23, 170, 437, 672, 1461
AcuI	CTGAAG	4 cut(s)	74, 1142, 1299, 1899
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	9 cut(s)	248, 488, 900, 993, 1189, 1530, 1679, 1861, 1939
AfiI	CCNNNNNNNGG	5 cut(s)	216, 646, 771, 1396, 1754
AjiI	CACGTC	1 cut(s)	1597
AjnI	CCWGG	3 cut(s)	580, 639, 1089
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	7 cut(s)	16, 332, 351, 499, 594, 1026, 1877
AluI	AGCT	7 cut(s)	16, 332, 351, 499, 594, 1026, 1877
Alw21I	GWGCWC	3 cut(s)	72, 880, 1346
Alw26I	GTCTC	1 cut(s)	127
Alw44I	GTGCAC	1 cut(s)	876
AlwI	GGATC	6 cut(s)	309, 1080, 1093, 1222, 1728, 1825
AlwNI	CAGNNNCTG	1 cut(s)	1489
Ama87I	CYCGRG	1 cut(s)	884
AoxI	GGCC	5 cut(s)	720, 1232, 1262, 1630, 1732
ApaLI	GTGCAC	1 cut(s)	876
ApeKI	GCWGC	4 cut(s)	636, 1007, 1737, 1985
ApoI	RAATTY	5 cut(s)	23, 170, 437, 672, 1461
AseI	ATTAAT	1 cut(s)	564
Asp700I	GAANNNNTTC	2 cut(s)	87, 405
Asp718I	GGTACC	1 cut(s)	1187
AspS9I	GGNCC	3 cut(s)	182, 1262, 1993
AsuC2I	CCSGG	3 cut(s)	119, 724, 1990
AsuHPI	GGTGA	6 cut(s)	791, 1190, 1307, 1656, 1703, 1805
AsuNHI	GCTAGC	1 cut(s)	1898
AvaI	CYCGRG	1 cut(s)	884
AvaII	GGWCC	2 cut(s)	182, 1993
BaeGI	GKGCMC	2 cut(s)	880, 1509
BaeI	ACNNNNGTAYC	2 cut(s)	882, 915
BalI	TGGCCA	1 cut(s)	1632
BamHI	GGATCC	1 cut(s)	1085
BanI	GGYRCC	1 cut(s)	1187
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	912
BbsI	GAAGAC	2 cut(s)	366, 1925
Bbv12I	GWGCWC	3 cut(s)	72, 880, 1346
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	4 cut(s)	623, 994, 1724, 1997
BccI	CCATC	7 cut(s)	173, 427, 1024, 1076, 1664, 1694, 1747
BciT130I	CCWGG	3 cut(s)	582, 641, 1091
BcnI	CCSGG	3 cut(s)	119, 724, 1990
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	4 cut(s)	591, 737, 1569, 1899
BfmI	CTRYAG	4 cut(s)	389, 506, 903, 1172
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	5 cut(s)	637, 1008, 1735, 1738, 1986
BlsI	GCNGC	5 cut(s)	638, 1009, 1736, 1739, 1987
BmcAI	AGTACT	1 cut(s)	488
Bme1390I	CCNGG	6 cut(s)	119, 582, 641, 724, 1091, 1990
Bme18I	GGWCC	2 cut(s)	182, 1993
BmeT110I	CYCGRG	1 cut(s)	884
BmgBI	CACGTC	1 cut(s)	1597
BmgT120I	GGNCC	3 cut(s)	182, 1262, 1993
BmiI	GGNNCC	3 cut(s)	1087, 1189, 1994
BmrFI	CCNGG	6 cut(s)	119, 582, 641, 724, 1091, 1990
BmrI	ACTGGG	1 cut(s)	1409
BmsI	GCATC	3 cut(s)	363, 598, 1448
BmtI	GCTAGC	1 cut(s)	1902
BmuI	ACTGGG	1 cut(s)	1409
BoxI	GACNNNNGTC	1 cut(s)	1909
BpiI	GAAGAC	2 cut(s)	366, 1925
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	3 cut(s)	41, 992, 1000
BpuMI	CCSGG	3 cut(s)	119, 724, 1990
BsaHI	GRCGYC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	6 cut(s)	117, 699, 723, 885, 1089, 1989
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	1599, 1629
Bsc4I	CCNNNNNNNGG	5 cut(s)	216, 646, 771, 1396, 1754
Bse1I	ACTGG	6 cut(s)	634, 938, 1265, 1415, 1434, 1567
Bse3DI	GCAATG	2 cut(s)	1554, 1665
BseBI	CCWGG	3 cut(s)	582, 641, 1091
BseDI	CCNNGG	6 cut(s)	117, 699, 723, 885, 1089, 1989
BseGI	GGATG	2 cut(s)	184, 1405
BseLI	CCNNNNNNNGG	5 cut(s)	216, 646, 771, 1396, 1754
BseMI	GCAATG	2 cut(s)	1554, 1665
BseMII	CTCAG	3 cut(s)	603, 1481, 1898
BseNI	ACTGG	6 cut(s)	634, 938, 1265, 1415, 1434, 1567
BseRI	GAGGAG	2 cut(s)	23, 443
BseSI	GKGCMC	2 cut(s)	880, 1509
BseXI	GCAGC	4 cut(s)	623, 994, 1724, 1997
BsgI	GTGCAG	1 cut(s)	1619
BshFI	GGCC	5 cut(s)	722, 1234, 1264, 1632, 1734
BshNI	GGYRCC	1 cut(s)	1187
BsiHKAI	GWGCWC	3 cut(s)	72, 880, 1346
BsiHKCI	CYCGRG	1 cut(s)	884
BsiSI	CCGG	4 cut(s)	119, 278, 723, 1989
BslFI	GGGAC	2 cut(s)	1607, 1859
BslI	CCNNNNNNNGG	5 cut(s)	216, 646, 771, 1396, 1754
BsmAI	GTCTC	1 cut(s)	127
BsmFI	GGGAC	2 cut(s)	1607, 1859
BsmI	GAATGC	1 cut(s)	1537
BsnI	GGCC	5 cut(s)	722, 1234, 1264, 1632, 1734
Bso31I	GGTCTC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	884
Bsp1286I	GDGCHC	5 cut(s)	57, 72, 880, 1346, 1509
Bsp1407I	TGTACA	3 cut(s)	246, 991, 1528
Bsp143I	GATC	6 cut(s)	301, 385, 1085, 1214, 1720, 1817
BspACI	CCGC	3 cut(s)	1191, 1224, 1735
BspANI	GGCC	5 cut(s)	722, 1234, 1264, 1632, 1734
BspCNI	CTCAG	3 cut(s)	604, 1482, 1899
BspHI	TCATGA	1 cut(s)	1710
BspLI	GGNNCC	3 cut(s)	1087, 1189, 1994
BspMAI	CTGCAG	1 cut(s)	1176
BspOI	GCTAGC	1 cut(s)	1902
BspPI	GGATC	6 cut(s)	309, 1080, 1093, 1222, 1728, 1825
BspT107I	GGYRCC	1 cut(s)	1187
BspTNI	GGTCTC	1 cut(s)	127
BsrDI	GCAATG	2 cut(s)	1554, 1665
BsrGI	TGTACA	3 cut(s)	246, 991, 1528
BsrI	ACTGG	6 cut(s)	634, 938, 1265, 1415, 1434, 1567
BssECI	CCNNGG	6 cut(s)	117, 699, 723, 885, 1089, 1989
BssMI	GATC	6 cut(s)	301, 385, 1085, 1214, 1720, 1817
BssNI	GRCGYC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	912
BssT1I	CCWWGG	1 cut(s)	699
Bst2BI	CACGAG	1 cut(s)	912
Bst2UI	CCWGG	3 cut(s)	582, 641, 1091
Bst6I	CTCTTC	1 cut(s)	1318
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstAUI	TGTACA	3 cut(s)	246, 991, 1528
BstC8I	GCNNGC	3 cut(s)	72, 880, 1900
BstDEI	CTNAG	4 cut(s)	452, 612, 1490, 1907
BstF5I	GGATG	2 cut(s)	184, 1405
BstKTI	GATC	6 cut(s)	304, 388, 1088, 1217, 1723, 1820
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	6 cut(s)	301, 385, 1085, 1214, 1720, 1817
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 860
BstNI	CCWGG	3 cut(s)	582, 641, 1091
BstPAI	GACNNNNGTC	1 cut(s)	1909
BstSCI	CCNGG	6 cut(s)	117, 580, 639, 722, 1089, 1988
BstSFI	CTRYAG	4 cut(s)	389, 506, 903, 1172
BstSLI	GKGCMC	2 cut(s)	880, 1509
BstV1I	GCAGC	4 cut(s)	623, 994, 1724, 1997
BstV2I	GAAGAC	2 cut(s)	366, 1925
BstX2I	RGATCY	5 cut(s)	301, 385, 1085, 1720, 1817
BstYI	RGATCY	5 cut(s)	301, 385, 1085, 1720, 1817
BsuRI	GGCC	5 cut(s)	722, 1234, 1264, 1632, 1734
BtrI	CACGTC	1 cut(s)	1597
BtsCI	GGATG	2 cut(s)	184, 1405
BtsIMutI	CAGTG	4 cut(s)	873, 894, 1441, 1795
Cac8I	GCNNGC	3 cut(s)	72, 880, 1900
CaiI	CAGNNNCTG	1 cut(s)	1489
CciI	TCATGA	1 cut(s)	1710
Cfr13I	GGNCC	3 cut(s)	182, 1262, 1993
Csp6I	GTAC	9 cut(s)	247, 487, 899, 992, 1188, 1529, 1678, 1860, 1938
CspCI	CAANNNNNGTGG	2 cut(s)	523, 558
CviAII	CATG	7 cut(s)	222, 254, 298, 365, 1445, 1681, 1711
CviQI	GTAC	9 cut(s)	247, 487, 899, 992, 1188, 1529, 1678, 1860, 1938
DdeI	CTNAG	4 cut(s)	452, 612, 1490, 1907
DpnI	GATC	6 cut(s)	303, 387, 1087, 1216, 1722, 1819
DpnII	GATC	6 cut(s)	301, 385, 1085, 1214, 1720, 1817
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	2 cut(s)	1630, 1732
Eam1104I	CTCTTC	1 cut(s)	1318
EarI	CTCTTC	1 cut(s)	1318
Eco130I	CCWWGG	1 cut(s)	699
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	182, 1993
Eco57I	CTGAAG	4 cut(s)	74, 1142, 1299, 1899
Eco88I	CYCGRG	1 cut(s)	884
EcoO109I	RGGNCCY	1 cut(s)	1993
EcoRII	CCWGG	3 cut(s)	580, 639, 1089
EcoT14I	CCWWGG	1 cut(s)	699
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	699
FaeI	CATG	7 cut(s)	225, 257, 301, 368, 1448, 1684, 1714
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 393, 425
FaqI	GGGAC	2 cut(s)	1607, 1859
FatI	CATG	7 cut(s)	221, 253, 297, 364, 1444, 1680, 1710
FauI	CCCGC	1 cut(s)	1217
FblI	GTMKAC	1 cut(s)	1947
Fnu4HI	GCNGC	5 cut(s)	637, 1008, 1735, 1738, 1986
FokI	GGATG	2 cut(s)	191, 1412
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	5 cut(s)	637, 1008, 1735, 1738, 1986
FspBI	CTAG	4 cut(s)	591, 737, 1569, 1899
GluI	GCNGC	5 cut(s)	637, 1008, 1735, 1738, 1986
GsuI	CTGGAG	1 cut(s)	651
HaeIII	GGCC	5 cut(s)	722, 1234, 1264, 1632, 1734
HapII	CCGG	4 cut(s)	119, 278, 723, 1989
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	7 cut(s)	225, 257, 301, 368, 1448, 1684, 1714
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	7 cut(s)	644, 695, 740, 915, 1112, 1322, 1972
HpaI	GTTAAC	1 cut(s)	63
HpaII	CCGG	4 cut(s)	119, 278, 723, 1989
HphI	GGTGA	6 cut(s)	791, 1190, 1307, 1656, 1703, 1805
Hpy188I	TCNGA	8 cut(s)	21, 169, 336, 745, 1111, 1491, 1516, 1619
Hpy188III	TCNNGA	7 cut(s)	239, 326, 737, 971, 1711, 1815, 1965
Hpy99I	CGWCG	3 cut(s)	143, 146, 1120
HpyAV	CCTTC	9 cut(s)	172, 395, 661, 749, 764, 800, 1117, 1790, 1962
HpyCH4IV	ACGT	4 cut(s)	141, 190, 1596, 1848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 860
HpyF3I	CTNAG	4 cut(s)	452, 612, 1490, 1907
HpySE526I	ACGT	4 cut(s)	141, 190, 1596, 1848
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	7 cut(s)	225, 257, 301, 368, 1448, 1684, 1714
KpnI	GGTACC	1 cut(s)	1191
KspAI	GTTAAC	1 cut(s)	63
Kzo9I	GATC	6 cut(s)	301, 385, 1085, 1214, 1720, 1817
LmnI	GCTCC	2 cut(s)	67, 1341
Lsp1109I	GCAGC	4 cut(s)	623, 994, 1724, 1997
LweI	GCATC	3 cut(s)	363, 598, 1448
MaeI	CTAG	4 cut(s)	591, 737, 1569, 1899
MaeII	ACGT	4 cut(s)	141, 190, 1596, 1848
MaeIII	GTNAC	7 cut(s)	191, 522, 619, 1571, 1662, 1741, 1849
MalI	GATC	6 cut(s)	303, 387, 1087, 1216, 1722, 1819
MboI	GATC	6 cut(s)	301, 385, 1085, 1214, 1720, 1817
MfeI	CAATTG	1 cut(s)	801
MflI	RGATCY	5 cut(s)	301, 385, 1085, 1720, 1817
MhlI	GDGCHC	5 cut(s)	57, 72, 880, 1346, 1509
MlsI	TGGCCA	1 cut(s)	1632
MluNI	TGGCCA	1 cut(s)	1632
MlyI	GAGTC	4 cut(s)	653, 924, 1106, 1316
MmeI	TCCRAC	4 cut(s)	181, 378, 971, 1566
Mox20I	TGGCCA	1 cut(s)	1632
MroXI	GAANNNNTTC	2 cut(s)	87, 405
MscI	TGGCCA	1 cut(s)	1632
MseI	TTAA	3 cut(s)	62, 564, 1058
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	1632
MspA1I	CMGCKG	1 cut(s)	1737
MspI	CCGG	4 cut(s)	119, 278, 723, 1989
MspR9I	CCNGG	6 cut(s)	119, 582, 641, 724, 1091, 1990
MunI	CAATTG	1 cut(s)	801
Mva1269I	GAATGC	1 cut(s)	1537
MvaI	CCWGG	3 cut(s)	582, 641, 1091
MwoI	GCNNNNNNNGC	2 cut(s)	259, 860
NciI	CCSGG	3 cut(s)	119, 724, 1990
NdeII	GATC	6 cut(s)	301, 385, 1085, 1214, 1720, 1817
NheI	GCTAGC	1 cut(s)	1898
NlaIII	CATG	7 cut(s)	225, 257, 301, 368, 1448, 1684, 1714
NlaIV	GGNNCC	3 cut(s)	1087, 1189, 1994
NmuCI	GTSAC	3 cut(s)	522, 1571, 1662
PagI	TCATGA	1 cut(s)	1710
PcsI	WCGNNNNNNNCGW	3 cut(s)	138, 165, 1963
PctI	GAATGC	1 cut(s)	1537
PdmI	GAANNNNTTC	2 cut(s)	87, 405
PfeI	GAWTC	3 cut(s)	695, 740, 1972
PflFI	GACNNNGTC	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	580
PkrI	GCNGC	5 cut(s)	638, 1009, 1736, 1739, 1987
PleI	GAGTC	4 cut(s)	652, 923, 1106, 1316
PpsI	GAGTC	4 cut(s)	652, 923, 1106, 1316
PpuMI	RGGWCCY	1 cut(s)	1993
PshAI	GACNNNNGTC	1 cut(s)	1909
PshBI	ATTAAT	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	1993
Psp6I	CCWGG	3 cut(s)	580, 639, 1089
PspGI	CCWGG	3 cut(s)	580, 639, 1089
PspN4I	GGNNCC	3 cut(s)	1087, 1189, 1994
PspPI	GGNCC	3 cut(s)	182, 1262, 1993
PspPPI	RGGWCCY	1 cut(s)	1993
PsrI	GAACNNNNNNTAC	2 cut(s)	1386, 1418
PstI	CTGCAG	1 cut(s)	1176
PstNI	CAGNNNCTG	1 cut(s)	1489
PsuI	RGATCY	5 cut(s)	301, 385, 1085, 1720, 1817
PsyI	GACNNNGTC	1 cut(s)	143
RsaI	GTAC	9 cut(s)	248, 488, 900, 993, 1189, 1530, 1679, 1861, 1939
RsaNI	GTAC	9 cut(s)	247, 487, 899, 992, 1188, 1529, 1678, 1860, 1938
RseI	CAYNNNNRTG	1 cut(s)	536
SaqAI	TTAA	3 cut(s)	62, 564, 1058
SatI	GCNGC	5 cut(s)	637, 1008, 1735, 1738, 1986
Sau3AI	GATC	6 cut(s)	301, 385, 1085, 1214, 1720, 1817
Sau96I	GGNCC	3 cut(s)	182, 1262, 1993
ScaI	AGTACT	1 cut(s)	488
SchI	GAGTC	4 cut(s)	653, 924, 1106, 1316
ScrFI	CCNGG	6 cut(s)	119, 582, 641, 724, 1091, 1990
SduI	GDGCHC	5 cut(s)	57, 72, 880, 1346, 1509
SfaNI	GCATC	3 cut(s)	363, 598, 1448
SfcI	CTRYAG	4 cut(s)	389, 506, 903, 1172
SinI	GGWCC	2 cut(s)	182, 1993
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	3 cut(s)	56, 971, 979
SmoI	CTYRAG	3 cut(s)	56, 971, 979
SsiI	CCGC	3 cut(s)	1191, 1224, 1735
SspI	AATATT	1 cut(s)	1623
SspMI	CTAG	4 cut(s)	591, 737, 1569, 1899
StyD4I	CCNGG	6 cut(s)	117, 580, 639, 722, 1089, 1988
StyI	CCWWGG	1 cut(s)	699
TaiI	ACGT	4 cut(s)	144, 193, 1599, 1851
TaqI	TCGA	2 cut(s)	132, 1966
TatI	WGTACW	5 cut(s)	246, 486, 991, 1528, 1859
TauI	GCSGC	1 cut(s)	1737
TfiI	GAWTC	3 cut(s)	695, 740, 1972
Tru1I	TTAA	3 cut(s)	62, 564, 1058
Tru9I	TTAA	3 cut(s)	62, 564, 1058
TscAI	CASTG	4 cut(s)	873, 901, 1441, 1795
TseFI	GTSAC	3 cut(s)	522, 1571, 1662
TseI	GCWGC	4 cut(s)	636, 1007, 1737, 1985
Tsp45I	GTSAC	3 cut(s)	522, 1571, 1662
TspDTI	ATGAA	9 cut(s)	274, 278, 286, 381, 665, 798, 1056, 1615, 1710
TspGWI	ACGGA	2 cut(s)	80, 344
TspRI	CASTG	4 cut(s)	873, 901, 1441, 1795
Tth111I	GACNNNGTC	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	876
VpaK11BI	GGWCC	2 cut(s)	182, 1993
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	5 cut(s)	23, 170, 437, 672, 1461
XbaI	TCTAGA	1 cut(s)	736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	1947
XmnI	GAANNNNTTC	2 cut(s)	87, 405
XspI	CTAG	4 cut(s)	591, 737, 1569, 1899
ZraI	GACGTC	1 cut(s)	142
ZrmI	AGTACT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.