Rorug06G0289700

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
44004469 .. 44007820
3352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0289700.1

Sequence Viewer

Length: 1251 bp
ATGATAAGCACACTCACTCTTCTCCATCCGATCTCTCATCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCGTTTCGCTCTGTGGTTTCGGTTACAGTTACAGTCAAATCCATGGCGACCCAAGGTCAAGTCATCACCTGCAAAGCGGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTTATCGAAGACGTCCAGGTGGCTCCGCCGCAGGCCGGAGAGGTCCGCGTCAAGATTCTCTACACCGCTCTCTGCCACACCGACGCTTATACCTGGGGCGGCAAGGACCCTGAAGGTCTCTTCCCTTGTATTCTTGGTCATGAGGCTGCAGGGATTGTTGAGAGTGTTGGTGAAGGTGTTACTGACGTTCAGGCGGGAGACCATGTCATCCCTTGTTACCAGGCTGAATGCGGAGAATGCAAGTTTTGCAAATCAGGGAAGACAAATCTCTGTGGAAAAGTACGTGCTGCCACTGGAGTTGGAGTCATGATGAGTGATCGTCAGAGCCGTTTCTCTATAAACGGAAAGCCTATTTACCATTTTATGGGAACCTCGACATTTAGCCAGTACACTGTTGTTCATGATGTTAGCGTTGCCAAGATAGATCCAAAAGCTCCTTTGGAGAAAGTATGCCTTCTCGGATGTGGTGTTCCTACTGGTCTTGGGGCCGTTTGGAACACAGCAAAAGTAGAAGCAGGGTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGTCTTGCAGTTGCTGAGGGTGCCAAAACAGCTGGTGCATCACGAATAATTGGCATCGACATCGATAGCAAGAAGTTTGATACAGCAAAGAACTTTGGAGTTACTGAATTTGTGAATCCAAAGGACCATGAGAAGCCAATCCAACAGGTCATAGTTGATCTCACTGATGGTGGTGTTGACTATAGCTTTGAGTGCATTGGGAATGTCTCAGTGATGAGGGCTGCCCTGGAGTGCTGCCACAAGGGCTGGGGAACATCAGTTATTGTAGGTGTTGCGGCATCAGGGCAAGAGATATCAACTCGTCCTTTTCAGCTGGTGACTGGTCGTGTGTGGAAGGGAACAGCCTTTGGTGGTTTCAAGAGCCGCTCACAGGTGCCTTGGCTTGTAGAGAAGTACTTGAAGAAGGAAATCAAAGTTGATGAATACATCACCCACACTTTGACCCTTGGGGAAATAAACAAGGCATTTGATTTGATGCATGAAGGGGGATGCCTCCGGTGTGTGCTTTCTACAGAAGCATAA

Protein Analysis

416

Amino Acids

44.35

Weight (kDa)

6.82

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 71 - 200 5.9e-22 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 243 - 371 9e-26 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 146
AatII GACGTC 1 cut(s) 192
Acc36I ACCTGC 1 cut(s) 146
AccB1I GGYRCC 2 cut(s) 749, 1102
AccB7I CCANNNNNTGG 1 cut(s) 541
AccBSI CCGCTC 2 cut(s) 245, 1095
AccII CGCG 1 cut(s) 225
AclWI GGATC 1 cut(s) 596
AcsI RAATTY 1 cut(s) 836
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 3 cut(s) 459, 566, 1124
AfiI CCNNNNNNNGG 3 cut(s) 212, 541, 1099
AgsI TTSAA 2 cut(s) 1087, 1129
AhdI GACNNNNNGTC 1 cut(s) 123
AjnI CCWGG 5 cut(s) 155, 192, 269, 396, 954
AloI GAACNNNNNNTCC 2 cut(s) 630, 662
AluBI AGCT 4 cut(s) 611, 761, 915, 1042
AluI AGCT 4 cut(s) 611, 761, 915, 1042
Alw26I GTCTC 3 cut(s) 299, 369, 940
AlwI GGATC 1 cut(s) 596
AlwNI CAGNNNCTG 1 cut(s) 743
AoxI GGCC 4 cut(s) 153, 210, 663, 715
ApeKI GCWGC 4 cut(s) 323, 464, 950, 963
ApoI RAATTY 1 cut(s) 836
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
AspS9I GGNCC 4 cut(s) 220, 283, 663, 853
AsuHPI GGTGA 4 cut(s) 127, 359, 1057, 1150
AvaII GGWCC 3 cut(s) 220, 283, 853
BanI GGYRCC 2 cut(s) 749, 1102
BbsI GAAGAC 2 cut(s) 192, 443
BbvCI CCTCAGC 1 cut(s) 744
BbvI GCAGC 4 cut(s) 310, 451, 937, 950
BccI CCATC 2 cut(s) 33, 890
BceAI ACGGC 2 cut(s) 489, 650
BcgI CGANNNNNNTGC 2 cut(s) 772, 806
BciT130I CCWGG 5 cut(s) 157, 194, 271, 398, 956
BcoDI GTCTC 3 cut(s) 299, 369, 940
BfmI CTRYAG 3 cut(s) 324, 910, 1239
BfuAI ACCTGC 1 cut(s) 146
BglI GCCNNNNNGGC 1 cut(s) 972
BisI GCNGC 9 cut(s) 147, 206, 277, 324, 465, 951, 964, 1005, 1093
BlsI GCNGC 9 cut(s) 148, 207, 278, 325, 466, 952, 965, 1006, 1094
BmcAI AGTACT 1 cut(s) 1124
Bme1390I CCNGG 5 cut(s) 157, 194, 271, 398, 956
Bme18I GGWCC 3 cut(s) 220, 283, 853
BmeRI GACNNNNNGTC 1 cut(s) 123
BmgT120I GGNCC 4 cut(s) 220, 283, 663, 853
BmiI GGNNCC 7 cut(s) 162, 201, 285, 547, 664, 751, 1104
BmrFI CCNGG 5 cut(s) 157, 194, 271, 398, 956
BmsI GCATC 5 cut(s) 776, 792, 1016, 1194, 1208
BpiI GAAGAC 2 cut(s) 192, 443
BpmI CTGGAG 2 cut(s) 492, 977
Bpu10I CCTNAGC 1 cut(s) 744
Bsa29I ATCGAT 1 cut(s) 792
BsaAI YACGTR 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 2 cut(s) 299, 369
BsaJI CCNNGG 8 cut(s) 111, 121, 156, 270, 718, 954, 1106, 1174
BsaWI WCCGGW 1 cut(s) 1224
BsaXI ACNNNNNCTCC 4 cut(s) 366, 396, 465, 495
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 541, 1099
Bse1I ACTGG 4 cut(s) 475, 562, 658, 1054
BseBI CCWGG 5 cut(s) 157, 194, 271, 398, 956
BseCI ATCGAT 1 cut(s) 792
BseDI CCNNGG 8 cut(s) 111, 121, 156, 270, 718, 954, 1106, 1174
BseGI GGATG 4 cut(s) 25, 384, 644, 1223
BseLI CCNNNNNNNGG 3 cut(s) 212, 541, 1099
BseMII CTCAG 2 cut(s) 735, 951
BseNI ACTGG 4 cut(s) 475, 562, 658, 1054
BseXI GCAGC 4 cut(s) 310, 451, 937, 950
BseYI CCCAGC 1 cut(s) 975
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 4 cut(s) 155, 212, 665, 717
BshNI GGYRCC 2 cut(s) 749, 1102
BshVI ATCGAT 1 cut(s) 792
BsiSI CCGG 2 cut(s) 213, 1225
BslI CCNNNNNNNGG 3 cut(s) 212, 541, 1099
BsmAI GTCTC 3 cut(s) 299, 369, 940
BsmI GAATGC 2 cut(s) 410, 419
BsnI GGCC 4 cut(s) 155, 212, 665, 717
Bso31I GGTCTC 2 cut(s) 299, 369
Bsp143I GATC 4 cut(s) 30, 493, 601, 886
Bsp19I CCATGG 1 cut(s) 111
BspANI GGCC 4 cut(s) 155, 212, 665, 717
BspCNI CTCAG 2 cut(s) 736, 950
BspDI ATCGAT 1 cut(s) 792
BspFNI CGCG 1 cut(s) 225
BspHI TCATGA 3 cut(s) 316, 483, 577
BspLI GGNNCC 7 cut(s) 162, 201, 285, 547, 664, 751, 1104
BspMAI CTGCAG 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 146
BspPI GGATC 1 cut(s) 596
BspT107I GGYRCC 2 cut(s) 749, 1102
BspTNI GGTCTC 2 cut(s) 299, 369
BsrBI CCGCTC 2 cut(s) 245, 1095
BsrI ACTGG 4 cut(s) 475, 562, 658, 1054
BssECI CCNNGG 8 cut(s) 111, 121, 156, 270, 718, 954, 1106, 1174
BssMI GATC 4 cut(s) 30, 493, 601, 886
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 5 cut(s) 111, 121, 718, 1106, 1174
Bst2UI CCWGG 5 cut(s) 157, 194, 271, 398, 956
Bst4CI ACNGT 4 cut(s) 97, 103, 571, 727
Bst6I CTCTTC 2 cut(s) 24, 302
BstACI GRCGYC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 423
BstBAI YACGTR 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 744, 937
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 4 cut(s) 25, 384, 644, 1223
BstFNI CGCG 1 cut(s) 225
BstKTI GATC 4 cut(s) 33, 496, 604, 889
BstMAI GTCTC 3 cut(s) 299, 369, 940
BstMBI GATC 4 cut(s) 30, 493, 601, 886
BstMWI GCNNNNNNNGC 7 cut(s) 152, 414, 423, 749, 758, 921, 972
BstNI CCWGG 5 cut(s) 157, 194, 271, 398, 956
BstSCI CCNGG 5 cut(s) 155, 192, 269, 396, 954
BstSFI CTRYAG 3 cut(s) 324, 910, 1239
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 4 cut(s) 310, 451, 937, 950
BstV2I GAAGAC 2 cut(s) 192, 443
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
Bsu15I ATCGAT 1 cut(s) 792
BsuRI GGCC 4 cut(s) 155, 212, 665, 717
BsuTUI ATCGAT 1 cut(s) 792
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 4 cut(s) 25, 384, 644, 1223
BtsIMutI CAGTG 4 cut(s) 468, 567, 891, 945
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 743
CciI TCATGA 3 cut(s) 316, 483, 577
Cfr13I GGNCC 4 cut(s) 220, 283, 663, 853
ClaI ATCGAT 1 cut(s) 792
CseI GACGC 2 cut(s) 214, 269
Csp6I GTAC 3 cut(s) 458, 565, 1123
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 7 cut(s) 112, 317, 380, 484, 578, 857, 1208
CviQI GTAC 3 cut(s) 458, 565, 1123
DdeI CTNAG 2 cut(s) 744, 937
DpnI GATC 4 cut(s) 32, 495, 603, 888
DpnII GATC 4 cut(s) 30, 493, 601, 886
DriI GACNNNNNGTC 1 cut(s) 123
Eam1104I CTCTTC 2 cut(s) 24, 302
Eam1105I GACNNNNNGTC 1 cut(s) 123
EarI CTCTTC 2 cut(s) 24, 302
EciI GGCGGA 1 cut(s) 192
Eco130I CCWWGG 5 cut(s) 111, 121, 718, 1106, 1174
Eco31I GGTCTC 2 cut(s) 299, 369
Eco32I GATATC 1 cut(s) 1023
Eco47I GGWCC 3 cut(s) 220, 283, 853
Eco57I CTGAAG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 5 cut(s) 155, 192, 269, 396, 954
EcoRV GATATC 1 cut(s) 1023
EcoT14I CCWWGG 5 cut(s) 111, 121, 718, 1106, 1174
EcoT22I ATGCAT 1 cut(s) 1209
ErhI CCWWGG 5 cut(s) 111, 121, 718, 1106, 1174
FaeI CATG 7 cut(s) 115, 320, 383, 487, 581, 860, 1211
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FatI CATG 7 cut(s) 111, 316, 379, 483, 577, 856, 1207
FauI CCCGC 1 cut(s) 364
Fnu4HI GCNGC 9 cut(s) 147, 206, 277, 324, 465, 951, 964, 1005, 1093
FokI GGATG 4 cut(s) 12, 371, 651, 1230
Fsp4HI GCNGC 9 cut(s) 147, 206, 277, 324, 465, 951, 964, 1005, 1093
GluI GCNGC 9 cut(s) 147, 206, 277, 324, 465, 951, 964, 1005, 1093
GsaI CCCAGC 1 cut(s) 979
GsuI CTGGAG 2 cut(s) 492, 977
HaeIII GGCC 4 cut(s) 155, 212, 665, 717
HapII CCGG 2 cut(s) 213, 1225
HgaI GACGC 2 cut(s) 214, 269
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 7 cut(s) 115, 320, 383, 487, 581, 860, 1211
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HinfI GANTC 3 cut(s) 232, 480, 844
HpaII CCGG 2 cut(s) 213, 1225
HphI GGTGA 4 cut(s) 127, 359, 1057, 1150
Hpy166II GTNNAC 2 cut(s) 567, 907
Hpy188I TCNGA 3 cut(s) 30, 501, 638
Hpy188III TCNNGA 6 cut(s) 229, 317, 484, 578, 771, 1087
Hpy8I GTNNAC 2 cut(s) 567, 907
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 6 cut(s) 284, 344, 641, 1057, 1126, 1205
HpyCH4III ACNGT 4 cut(s) 97, 103, 571, 727
HpyCH4IV ACGT 3 cut(s) 189, 363, 460
HpyCH4V TGCA 8 cut(s) 141, 326, 417, 426, 737, 767, 924, 1207
HpyF10VI GCNNNNNNNGC 7 cut(s) 152, 414, 423, 749, 758, 921, 972
HpyF3I CTNAG 2 cut(s) 744, 937
HpySE526I ACGT 3 cut(s) 189, 363, 460
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 7 cut(s) 115, 320, 383, 487, 581, 860, 1211
Kzo9I GATC 4 cut(s) 30, 493, 601, 886
LmnI GCTCC 2 cut(s) 205, 616
Lsp1109I GCAGC 4 cut(s) 310, 451, 937, 950
LweI GCATC 5 cut(s) 776, 792, 1016, 1194, 1208
MaeII ACGT 3 cut(s) 189, 363, 460
MaeIII GTNAC 6 cut(s) 91, 97, 355, 392, 829, 1045
MalI GATC 4 cut(s) 32, 495, 603, 888
MbiI CCGCTC 2 cut(s) 245, 1095
MboI GATC 4 cut(s) 30, 493, 601, 886
MboII GAAGA 6 cut(s) 11, 32, 197, 289, 448, 1141
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 1 cut(s) 601
MluCI AATT 3 cut(s) 699, 777, 836
MlyI GAGTC 1 cut(s) 489
MmeI TCCRAC 2 cut(s) 457, 895
MnlI CCTC 6 cut(s) 211, 313, 559, 739, 939, 1232
Mph1103I ATGCAT 1 cut(s) 1209
MspA1I CMGCKG 2 cut(s) 761, 1042
MspI CCGG 2 cut(s) 213, 1225
MspR9I CCNGG 5 cut(s) 157, 194, 271, 398, 956
MunI CAATTG 1 cut(s) 699
Mva1269I GAATGC 2 cut(s) 410, 419
MvaI CCWGG 5 cut(s) 157, 194, 271, 398, 956
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 7 cut(s) 152, 414, 423, 749, 758, 921, 972
NcoI CCATGG 1 cut(s) 111
NdeII GATC 4 cut(s) 30, 493, 601, 886
NlaIII CATG 7 cut(s) 115, 320, 383, 487, 581, 860, 1211
NlaIV GGNNCC 7 cut(s) 162, 201, 285, 547, 664, 751, 1104
NmuCI GTSAC 1 cut(s) 1045
NsiI ATGCAT 1 cut(s) 1209
PagI TCATGA 3 cut(s) 316, 483, 577
PaqCI CACCTGC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 502
PctI GAATGC 2 cut(s) 410, 419
PfeI GAWTC 2 cut(s) 232, 844
PflFI GACNNNGTC 1 cut(s) 380
PflMI CCANNNNNTGG 1 cut(s) 541
PkrI GCNGC 9 cut(s) 148, 207, 278, 325, 466, 952, 965, 1006, 1094
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
Ppu21I YACGTR 1 cut(s) 461
PpuMI RGGWCCY 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 5 cut(s) 155, 192, 269, 396, 954
PspFI CCCAGC 1 cut(s) 975
PspGI CCWGG 5 cut(s) 155, 192, 269, 396, 954
PspN4I GGNNCC 7 cut(s) 162, 201, 285, 547, 664, 751, 1104
PspPI GGNCC 4 cut(s) 220, 283, 663, 853
PspPPI RGGWCCY 1 cut(s) 283
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 1 cut(s) 601
PsyI GACNNNGTC 1 cut(s) 380
PvuII CAGCTG 2 cut(s) 761, 1042
RsaI GTAC 3 cut(s) 459, 566, 1124
RsaNI GTAC 3 cut(s) 458, 565, 1123
SatI GCNGC 9 cut(s) 147, 206, 277, 324, 465, 951, 964, 1005, 1093
Sau3AI GATC 4 cut(s) 30, 493, 601, 886
Sau96I GGNCC 4 cut(s) 220, 283, 663, 853
ScaI AGTACT 1 cut(s) 1124
SchI GAGTC 1 cut(s) 489
ScrFI CCNGG 5 cut(s) 157, 194, 271, 398, 956
SfaNI GCATC 5 cut(s) 776, 792, 1016, 1194, 1208
SfcI CTRYAG 3 cut(s) 324, 910, 1239
SinI GGWCC 3 cut(s) 220, 283, 853
Sse9I AATT 3 cut(s) 699, 777, 836
StyD4I CCNGG 5 cut(s) 155, 192, 269, 396, 954
StyI CCWWGG 5 cut(s) 111, 121, 718, 1106, 1174
TaaI ACNGT 4 cut(s) 97, 103, 571, 727
TaiI ACGT 3 cut(s) 192, 366, 463
TaqI TCGA 4 cut(s) 183, 551, 786, 792
TasI AATT 3 cut(s) 699, 777, 836
TatI WGTACW 2 cut(s) 564, 1122
TauI GCSGC 5 cut(s) 149, 208, 279, 1007, 1095
TfiI GAWTC 2 cut(s) 232, 844
TscAI CASTG 4 cut(s) 475, 574, 898, 945
TseFI GTSAC 1 cut(s) 1045
TseI GCWGC 4 cut(s) 323, 464, 950, 963
Tsp45I GTSAC 1 cut(s) 1045
TspDTI ATGAA 3 cut(s) 566, 1164, 1224
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 4 cut(s) 475, 574, 898, 945
Tth111I GACNNNGTC 1 cut(s) 380
Van91I CCANNNNNTGG 1 cut(s) 541
VpaK11BI GGWCC 3 cut(s) 220, 283, 853
XapI RAATTY 1 cut(s) 836
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
ZraI GACGTC 1 cut(s) 190
ZrmI AGTACT 1 cut(s) 1124
Zsp2I ATGCAT 1 cut(s) 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.