Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008732

Physical Location & Seq

Genomic Coordinates Forward (+)

59846832 .. 59853643

Gene Structure 6812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG401100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

GAGAGGGTTGCTAGTTTGTTTGAAATTGAAATGGACGAGGAGAAGCTTCAGAAATTCGTGGAAGCCTACTTGAAGAAGAAAGGGCTCAAGTTAACGGAGCACGCTCTCCAAGAAGAACTTCAGCAATCCACCAATACTTCTTCCTCCCCGGTCTCTCAATTCGACCCCGACGTCGTCAGGCAAATCCTCGCCTTCTCCGAATTTGAGGATGGTCCAGCACGTTACCAAGATGGATATGCCAAGTTGAGGTCATGGACTAATACTTCTCTGGATTTGTACAGGCATGAGTTGCTTCGTGTTCTTTATCCGGTATTCATTCATTGTTTCATGGATCTGGTTGCCAAAGGTCATATTCAAGAAGCTCGGACATTTTTCAATAGCTTCCGTGAAGACCATGAAATGATGCACCTACGAGATCTACAGAAGTTGGAAGGAGTTCTTTCTCCCTCTCATTTAGAGGAGATGGAATTTGCTCATTCTCTTAGGCAGAGCAAAGTGAACATAAAGATATGTCAGTACTCCTACGAGCTTCTGCTACAGTTTTTGCACAAGTCACAGTCCACCACAATGCTTGGGATTATCAATGAGCATATTAATTTCCAAGTTTCTCCTGGACAACCTAGCTCAATTACTGATGATGCTGAGGCTGTAACACTTACTGGAGGTAGCCAGGAGTCAGCTAATCAAATAAACCAGAAGGAAATTCATTGGGGGTTGCTTGAAGATTCCTTGGAAGAACGCTTGGAAAAGGCCGGGGGAATGGCTTTAGATTCTGAAAAAGCAGAAGGGGAAACCAAAGAAGGGGAGGGTGATGAAAATAAGAAAAAATCAATTGAAGGAGGTAAACAGGGTGCTTCAATCAAAAAGCAAAAAAAGGACAAGGCTGTTAGTGCAACAGTGAAAAATGCACGCCCCGAGGCAACCACTGTACCTACAGCACCACGAGTCAAACCAGAACTTACTTTGCCAGTAATTCCAACAGAAGTTGAACAGTCTATTCTTGAGGACTTGAGAAACCGTGTACAGTTGAGTAGTGCTGCGTTGCCATCTGTCAGCTTTTATACATTTATCAACACACACAATGGGTTAAACTGTTCATCTATATCCCATGATGGATCCCTGGTTGCTGGTGGATTTTCTGACTCGTCGCTGAAGGTCTGGGATATGGCAAAGATTGGGCAACAATCTGTTGGTTCAATTCTGCAGGGTGAAAATGGTACCGCTTCAAGTGAACAAGTTGCTGGATCAAATGGTGGGAAAAGGCCATATACATTGTTTCAGGGTCATTCAGGGCCAGTTTATTCTGCTACTTTCAATCCTCTGGGTGATTTTATACTTTCCTCTTCAGCAGACTCAACTATTCGGTTGTGGAGCACAAACCTAAATGCCAATCTTGTTTGCTACAAGGGTCATAACTACCCTGTATGGGATGTTCAGTTTAGTCCAGTAGGTCATTATTTTGCCAGTGCATCACATGATAGAACAGCAAGAATTTGGTCTATGGACAGAATACAGCCTCTGAGAATAATGGCAGGGCACTTATCTGATGTTGATTGTGTACAATGGCATTCCAACTGCAACTACATTGCAACTGGTTCTAGTGACAAAACAGTTAGATTATGGGACGTGCAGAGTGGAGAGTGTGTCCGAATATTCATTGGCCACAGGAGTATGATTTTATCTCTTGCAATGTCACCTGATGGTCGGTACATGGCTTCGGGTGATGAAGATGGCTCAATTATGATGTGGGATCTTTCAAGTGGCCGCTGCGTTACACCTTTGATGGGTCATACCTCATGCGTATGGACATTGGCTTTCAGTGGTGAAGGTTCACTCCTTGCTTCTGGATCTGCTGATTGCACGGTAAAATTATGGGACGTAACTGCAAGTACAAAGTTGCCAAAAGCGGAAGAAAAAAGTGGAAGTGCTAGCAGACTGAGGTCATTGAAGACTTTACCAACCAAGTGTACGCCTGTCTACTCCTTACGGTTTTCTCGAAGGAATCTTTTGTTTGCAGCGGGGGTCCTTTCAAAAACTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0005856 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0015629 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031248 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033276 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID_NTD2 WD40

Protein Analysis

680

Amino Acids

75.22

Weight (kDa)

6.06

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID_NTD2	PF04494	70 - 198	1e-45	WD40 associated region in TFIID subunit, NTD2 domain
Beta-prop_WDR3_1st	PF25173	356 - 543	3.2e-25	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	356 - 481	1.5e-11	WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	361 - 502	1.5e-09	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	409 - 625	2.3e-12	WDR36/Utp21 first beta-propeller
WD40	PF00400	423 - 458	9.7e-09	WD domain, G-beta repeat
WD40_Gbeta	PF25391	424 - 501	2.5e-06	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	424 - 542	3.3e-18	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	424 - 585	2.8e-34	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	424 - 585	1.9e-15	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	424 - 503	3.1e-15	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	425 - 494	4e-07	WDR36/Utp21 second beta-propeller domain
EIF3I	PF24805	425 - 502	1.8e-10	EIF3I
Beta-prop_IFT122_1st	PF23381	426 - 570	9.1e-07	IFT122 first beta-propeller
Beta-prop_EML_2	PF23414	432 - 530	4.8e-07	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	433 - 589	1.8e-14	WDR55
WD40	PF00400	467 - 500	1e-08	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	469 - 632	3.9e-47	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	471 - 550	9.6e-20	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	473 - 636	4.4e-27	CDC20/Fizzy WD40 domain
WDR90_beta-prop_4th	PF23342	475 - 590	7.9e-08	WDR90, 4th beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	475 - 585	1.3e-14	MABP1/WDR62 second WD40 domain
Beta-prop_WDR19_1st	PF23389	483 - 634	4.3e-09	WDR19 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	487 - 590	4.3e-13	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	493 - 574	5.1e-10	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	495 - 592	9.1e-23	THOC3 beta-propeller domain
WD40	PF00400	505 - 542	3.9e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	507 - 592	3.1e-10	CAF1B/HIR1 beta-propeller domain
WD40_Gbeta	PF25391	508 - 633	1.7e-21	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	515 - 592	8.7e-15	WDHD1 first WD40 domain
Beta-prop_IFT140_1st	PF23383	515 - 586	1.2e-07	IFT140 first beta-propeller
Beta-prop_WDR3_2nd	PF25172	519 - 628	5.6e-20	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	525 - 645	1.2e-15	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_SCAP	PF24017	529 - 637	7e-09	SCAP Beta-propeller
Beta-prop_WDR3_1st	PF25173	537 - 642	1.7e-26	WDR3 first beta-propeller domain
WD40	PF00400	546 - 584	3.4e-10	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	550 - 633	1.9e-09	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	551 - 639	3.8e-19	THOC3 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	551 - 629	7.6e-06	MABP1/WDR62 first WD40 domain
EIF3I	PF24805	554 - 640	1.7e-07	EIF3I
Beta-prop_EML	PF23409	557 - 630	3.9e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	560 - 626	2.9e-07	MABP1/WDR62 second WD40 domain
WD40_Prp19	PF24814	566 - 633	1.9e-14	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	576 - 631	2.4e-06	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	588 - 626	5.6e-11	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25150 AT5G25150
fragaria_vesca	FvH4_2g41020 FvH4_2g41020 FvH4_2g41020 FvH4_2g41020 FvH4_2g41020
malus_domestica	MD00G1143300.v1.1 MD15G1039100.v1.1
prunus_persica	Prupe.1G392800_v2.0.a1 Prupe.1G392800_v2.0.a1
pyrus_communis	pycom08g04780
rosa_chinensis	RchiOBHm_Chr6g0299541
rosa_laevigata	RLG00000011417
rosa_multiflora	Rmu_sc0004064.1_g000008
rosa_roxburghii	Rroxscaffold_7G00168570
rosa_rugosa	Rorug06G0289700 Rorug06G0289800 Rorug06G0289900 Rorug06G0289900
rosa_samantha	Rh6AG401100 Rh6DG402200
rosa_wichuraiana	Rw6G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	1 cut(s)	174
Acc65I	GGTACC	1 cut(s)	1217
AccB1I	GGYRCC	1 cut(s)	1217
AccI	GTMKAC	1 cut(s)	1977
AciI	CCGC	4 cut(s)	1221, 1765, 1907, 2018
AclWI	GGATC	6 cut(s)	339, 1110, 1123, 1252, 1758, 1855
AcoI	YGGCCR	2 cut(s)	1660, 1762
AcsI	RAATTY	5 cut(s)	53, 200, 467, 702, 1491
AcuI	CTGAAG	4 cut(s)	32, 104, 1172, 1329
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	9 cut(s)	278, 518, 930, 1023, 1219, 1560, 1709, 1891, 1969
AfiI	CCNNNNNNNGG	4 cut(s)	246, 801, 1426, 1784
AjiI	CACGTC	1 cut(s)	1627
AjnI	CCWGG	3 cut(s)	610, 669, 1119
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	7 cut(s)	46, 362, 381, 529, 624, 680, 1056
AluI	AGCT	7 cut(s)	46, 362, 381, 529, 624, 680, 1056
Alw21I	GWGCWC	2 cut(s)	102, 1376
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	6 cut(s)	339, 1110, 1123, 1252, 1758, 1855
AlwNI	CAGNNNCTG	1 cut(s)	1519
Ama87I	CYCGRG	1 cut(s)	914
AoxI	GGCC	5 cut(s)	750, 1262, 1292, 1660, 1762
ApeKI	GCWGC	3 cut(s)	1037, 1767, 2015
ApoI	RAATTY	5 cut(s)	53, 200, 467, 702, 1491
AseI	ATTAAT	1 cut(s)	594
Asp700I	GAANNNNTTC	2 cut(s)	117, 435
Asp718I	GGTACC	1 cut(s)	1217
AspS9I	GGNCC	3 cut(s)	212, 1292, 2023
AsuC2I	CCSGG	2 cut(s)	149, 754
AsuHPI	GGTGA	6 cut(s)	821, 1220, 1337, 1686, 1733, 1835
AsuNHI	GCTAGC	1 cut(s)	1928
AvaI	CYCGRG	1 cut(s)	914
AvaII	GGWCC	2 cut(s)	212, 2023
BaeGI	GKGCMC	1 cut(s)	1539
BaeI	ACNNNNGTAYC	2 cut(s)	912, 945
BalI	TGGCCA	1 cut(s)	1662
BamHI	GGATCC	1 cut(s)	1115
BanI	GGYRCC	1 cut(s)	1217
BanII	GRGCYC	1 cut(s)	87
BauI	CACGAG	1 cut(s)	942
BbsI	GAAGAC	2 cut(s)	396, 1955
Bbv12I	GWGCWC	2 cut(s)	102, 1376
BbvCI	CCTCAGC	1 cut(s)	642
BbvI	GCAGC	3 cut(s)	1024, 1754, 2027
BccI	CCATC	8 cut(s)	203, 224, 457, 1054, 1106, 1694, 1724, 1777
BciT130I	CCWGG	3 cut(s)	612, 671, 1121
BcnI	CCSGG	2 cut(s)	149, 754
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	4 cut(s)	12, 621, 1599, 1929
BfmI	CTRYAG	4 cut(s)	419, 536, 933, 1202
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	4 cut(s)	1038, 1765, 1768, 2016
BlsI	GCNGC	4 cut(s)	1039, 1766, 1769, 2017
BmcAI	AGTACT	1 cut(s)	518
Bme1390I	CCNGG	5 cut(s)	149, 612, 671, 754, 1121
Bme18I	GGWCC	2 cut(s)	212, 2023
BmeT110I	CYCGRG	1 cut(s)	914
BmgBI	CACGTC	1 cut(s)	1627
BmgT120I	GGNCC	3 cut(s)	212, 1292, 2023
BmiI	GGNNCC	3 cut(s)	1117, 1219, 2024
BmrFI	CCNGG	5 cut(s)	149, 612, 671, 754, 1121
BmsI	GCATC	3 cut(s)	393, 628, 1478
BmtI	GCTAGC	1 cut(s)	1932
BoxI	GACNNNNGTC	1 cut(s)	1939
BpiI	GAAGAC	2 cut(s)	396, 1955
BpmI	CTGGAG	1 cut(s)	681
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	3 cut(s)	71, 1022, 1030
BpuMI	CCSGG	2 cut(s)	149, 754
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	5 cut(s)	147, 729, 753, 915, 1119
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	1629, 1659
Bsc4I	CCNNNNNNNGG	4 cut(s)	246, 801, 1426, 1784
Bse1I	ACTGG	6 cut(s)	664, 968, 1295, 1445, 1464, 1597
Bse3DI	GCAATG	2 cut(s)	1584, 1695
BseBI	CCWGG	3 cut(s)	612, 671, 1121
BseDI	CCNNGG	5 cut(s)	147, 729, 753, 915, 1119
BseGI	GGATG	2 cut(s)	214, 1435
BseLI	CCNNNNNNNGG	4 cut(s)	246, 801, 1426, 1784
BseMI	GCAATG	2 cut(s)	1584, 1695
BseMII	CTCAG	3 cut(s)	633, 1511, 1928
BseNI	ACTGG	6 cut(s)	664, 968, 1295, 1445, 1464, 1597
BseRI	GAGGAG	2 cut(s)	53, 473
BseSI	GKGCMC	1 cut(s)	1539
BseXI	GCAGC	3 cut(s)	1024, 1754, 2027
BsgI	GTGCAG	1 cut(s)	1649
BshFI	GGCC	5 cut(s)	752, 1264, 1294, 1662, 1764
BshNI	GGYRCC	1 cut(s)	1217
BsiHKAI	GWGCWC	2 cut(s)	102, 1376
BsiHKCI	CYCGRG	1 cut(s)	914
BsiSI	CCGG	3 cut(s)	149, 308, 753
BslFI	GGGAC	2 cut(s)	1637, 1889
BslI	CCNNNNNNNGG	4 cut(s)	246, 801, 1426, 1784
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	2 cut(s)	1637, 1889
BsmI	GAATGC	1 cut(s)	1567
BsnI	GGCC	5 cut(s)	752, 1264, 1294, 1662, 1764
Bso31I	GGTCTC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	914
Bsp1286I	GDGCHC	4 cut(s)	87, 102, 1376, 1539
Bsp1407I	TGTACA	3 cut(s)	276, 1021, 1558
Bsp143I	GATC	6 cut(s)	331, 415, 1115, 1244, 1750, 1847
BspACI	CCGC	4 cut(s)	1221, 1765, 1907, 2018
BspANI	GGCC	5 cut(s)	752, 1264, 1294, 1662, 1764
BspCNI	CTCAG	3 cut(s)	634, 1512, 1929
BspLI	GGNNCC	3 cut(s)	1117, 1219, 2024
BspMAI	CTGCAG	1 cut(s)	1206
BspOI	GCTAGC	1 cut(s)	1932
BspPI	GGATC	6 cut(s)	339, 1110, 1123, 1252, 1758, 1855
BspT107I	GGYRCC	1 cut(s)	1217
BspTNI	GGTCTC	1 cut(s)	157
BsrDI	GCAATG	2 cut(s)	1584, 1695
BsrGI	TGTACA	3 cut(s)	276, 1021, 1558
BsrI	ACTGG	6 cut(s)	664, 968, 1295, 1445, 1464, 1597
BssECI	CCNNGG	5 cut(s)	147, 729, 753, 915, 1119
BssMI	GATC	6 cut(s)	331, 415, 1115, 1244, 1750, 1847
BssNI	GRCGYC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	942
BssT1I	CCWWGG	1 cut(s)	729
Bst2BI	CACGAG	1 cut(s)	942
Bst2UI	CCWGG	3 cut(s)	612, 671, 1121
Bst6I	CTCTTC	1 cut(s)	1348
BstACI	GRCGYC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	289
BstAUI	TGTACA	3 cut(s)	276, 1021, 1558
BstC8I	GCNNGC	3 cut(s)	102, 910, 1930
BstDEI	CTNAG	4 cut(s)	482, 642, 1520, 1937
BstF5I	GGATG	2 cut(s)	214, 1435
BstKTI	GATC	6 cut(s)	334, 418, 1118, 1247, 1753, 1850
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	6 cut(s)	331, 415, 1115, 1244, 1750, 1847
BstMWI	GCNNNNNNNGC	2 cut(s)	289, 890
BstNI	CCWGG	3 cut(s)	612, 671, 1121
BstPAI	GACNNNNGTC	1 cut(s)	1939
BstSCI	CCNGG	5 cut(s)	147, 610, 669, 752, 1119
BstSFI	CTRYAG	4 cut(s)	419, 536, 933, 1202
BstSLI	GKGCMC	1 cut(s)	1539
BstV1I	GCAGC	3 cut(s)	1024, 1754, 2027
BstV2I	GAAGAC	2 cut(s)	396, 1955
BstX2I	RGATCY	5 cut(s)	331, 415, 1115, 1750, 1847
BstYI	RGATCY	5 cut(s)	331, 415, 1115, 1750, 1847
BsuRI	GGCC	5 cut(s)	752, 1264, 1294, 1662, 1764
BtrI	CACGTC	1 cut(s)	1627
BtsCI	GGATG	2 cut(s)	214, 1435
BtsIMutI	CAGTG	4 cut(s)	903, 924, 1471, 1825
Cac8I	GCNNGC	3 cut(s)	102, 910, 1930
CaiI	CAGNNNCTG	1 cut(s)	1519
Cfr13I	GGNCC	3 cut(s)	212, 1292, 2023
Csp6I	GTAC	9 cut(s)	277, 517, 929, 1022, 1218, 1559, 1708, 1890, 1968
CspCI	CAANNNNNGTGG	2 cut(s)	553, 588
CviAII	CATG	8 cut(s)	252, 284, 328, 395, 1109, 1475, 1711, 1797
CviQI	GTAC	9 cut(s)	277, 517, 929, 1022, 1218, 1559, 1708, 1890, 1968
DdeI	CTNAG	4 cut(s)	482, 642, 1520, 1937
DpnI	GATC	6 cut(s)	333, 417, 1117, 1246, 1752, 1849
DpnII	GATC	6 cut(s)	331, 415, 1115, 1244, 1750, 1847
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	2 cut(s)	1660, 1762
Eam1104I	CTCTTC	1 cut(s)	1348
EarI	CTCTTC	1 cut(s)	1348
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	212, 2023
Eco57I	CTGAAG	4 cut(s)	32, 104, 1172, 1329
Eco88I	CYCGRG	1 cut(s)	914
EcoO109I	RGGNCCY	1 cut(s)	2023
EcoRII	CCWGG	3 cut(s)	610, 669, 1119
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	8 cut(s)	255, 287, 331, 398, 1112, 1478, 1714, 1800
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 423, 455
FaqI	GGGAC	2 cut(s)	1637, 1889
FatI	CATG	8 cut(s)	251, 283, 327, 394, 1108, 1474, 1710, 1796
FauI	CCCGC	1 cut(s)	2011
FblI	GTMKAC	1 cut(s)	1977
Fnu4HI	GCNGC	4 cut(s)	1038, 1765, 1768, 2016
FokI	GGATG	2 cut(s)	221, 1442
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	4 cut(s)	1038, 1765, 1768, 2016
FspBI	CTAG	4 cut(s)	12, 621, 1599, 1929
GluI	GCNGC	4 cut(s)	1038, 1765, 1768, 2016
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	5 cut(s)	752, 1264, 1294, 1662, 1764
HapII	CCGG	3 cut(s)	149, 308, 753
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	8 cut(s)	255, 287, 331, 398, 1112, 1478, 1714, 1800
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	7 cut(s)	674, 725, 770, 945, 1142, 1352, 2002
HpaI	GTTAAC	1 cut(s)	93
HpaII	CCGG	3 cut(s)	149, 308, 753
HphI	GGTGA	6 cut(s)	821, 1220, 1337, 1686, 1733, 1835
Hpy188I	TCNGA	8 cut(s)	51, 199, 366, 775, 1141, 1521, 1546, 1649
Hpy188III	TCNNGA	5 cut(s)	269, 356, 1001, 1845, 1995
Hpy99I	CGWCG	3 cut(s)	173, 176, 1150
HpyAV	CCTTC	9 cut(s)	202, 425, 691, 779, 794, 830, 1147, 1820, 1992
HpyCH4IV	ACGT	4 cut(s)	171, 220, 1626, 1878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	289, 890
HpyF3I	CTNAG	4 cut(s)	482, 642, 1520, 1937
HpySE526I	ACGT	4 cut(s)	171, 220, 1626, 1878
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	8 cut(s)	255, 287, 331, 398, 1112, 1478, 1714, 1800
KpnI	GGTACC	1 cut(s)	1221
KspAI	GTTAAC	1 cut(s)	93
Kzo9I	GATC	6 cut(s)	331, 415, 1115, 1244, 1750, 1847
LmnI	GCTCC	2 cut(s)	97, 1371
Lsp1109I	GCAGC	3 cut(s)	1024, 1754, 2027
LweI	GCATC	3 cut(s)	393, 628, 1478
MaeI	CTAG	4 cut(s)	12, 621, 1599, 1929
MaeII	ACGT	4 cut(s)	171, 220, 1626, 1878
MaeIII	GTNAC	7 cut(s)	221, 552, 649, 1601, 1692, 1771, 1879
MalI	GATC	6 cut(s)	333, 417, 1117, 1246, 1752, 1849
MboI	GATC	6 cut(s)	331, 415, 1115, 1244, 1750, 1847
MfeI	CAATTG	1 cut(s)	831
MflI	RGATCY	5 cut(s)	331, 415, 1115, 1750, 1847
MhlI	GDGCHC	4 cut(s)	87, 102, 1376, 1539
MlsI	TGGCCA	1 cut(s)	1662
MluNI	TGGCCA	1 cut(s)	1662
MlyI	GAGTC	4 cut(s)	683, 954, 1136, 1346
MmeI	TCCRAC	3 cut(s)	408, 1001, 1596
Mox20I	TGGCCA	1 cut(s)	1662
MroXI	GAANNNNTTC	2 cut(s)	117, 435
MscI	TGGCCA	1 cut(s)	1662
MseI	TTAA	3 cut(s)	92, 594, 1088
MslI	CAYNNNNRTG	2 cut(s)	566, 1801
Msp20I	TGGCCA	1 cut(s)	1662
MspA1I	CMGCKG	2 cut(s)	1767, 2018
MspI	CCGG	3 cut(s)	149, 308, 753
MspR9I	CCNGG	5 cut(s)	149, 612, 671, 754, 1121
MunI	CAATTG	1 cut(s)	831
Mva1269I	GAATGC	1 cut(s)	1567
MvaI	CCWGG	3 cut(s)	612, 671, 1121
MwoI	GCNNNNNNNGC	2 cut(s)	289, 890
NciI	CCSGG	2 cut(s)	149, 754
NdeII	GATC	6 cut(s)	331, 415, 1115, 1244, 1750, 1847
NheI	GCTAGC	1 cut(s)	1928
NlaIII	CATG	8 cut(s)	255, 287, 331, 398, 1112, 1478, 1714, 1800
NlaIV	GGNNCC	3 cut(s)	1117, 1219, 2024
NmuCI	GTSAC	3 cut(s)	552, 1601, 1692
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 195, 1993
PctI	GAATGC	1 cut(s)	1567
PdmI	GAANNNNTTC	2 cut(s)	117, 435
PfeI	GAWTC	3 cut(s)	725, 770, 2002
PflFI	GACNNNGTC	1 cut(s)	173
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	4 cut(s)	1039, 1766, 1769, 2017
PleI	GAGTC	4 cut(s)	682, 953, 1136, 1346
PpsI	GAGTC	4 cut(s)	682, 953, 1136, 1346
PpuMI	RGGWCCY	1 cut(s)	2023
PshAI	GACNNNNGTC	1 cut(s)	1939
PshBI	ATTAAT	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	2023
Psp6I	CCWGG	3 cut(s)	610, 669, 1119
PspGI	CCWGG	3 cut(s)	610, 669, 1119
PspN4I	GGNNCC	3 cut(s)	1117, 1219, 2024
PspPI	GGNCC	3 cut(s)	212, 1292, 2023
PspPPI	RGGWCCY	1 cut(s)	2023
PsrI	GAACNNNNNNTAC	2 cut(s)	1416, 1448
PstI	CTGCAG	1 cut(s)	1206
PstNI	CAGNNNCTG	1 cut(s)	1519
PsuI	RGATCY	5 cut(s)	331, 415, 1115, 1750, 1847
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	9 cut(s)	278, 518, 930, 1023, 1219, 1560, 1709, 1891, 1969
RsaNI	GTAC	9 cut(s)	277, 517, 929, 1022, 1218, 1559, 1708, 1890, 1968
RseI	CAYNNNNRTG	2 cut(s)	566, 1801
SaqAI	TTAA	3 cut(s)	92, 594, 1088
SatI	GCNGC	4 cut(s)	1038, 1765, 1768, 2016
Sau3AI	GATC	6 cut(s)	331, 415, 1115, 1244, 1750, 1847
Sau96I	GGNCC	3 cut(s)	212, 1292, 2023
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	4 cut(s)	683, 954, 1136, 1346
ScrFI	CCNGG	5 cut(s)	149, 612, 671, 754, 1121
SduI	GDGCHC	4 cut(s)	87, 102, 1376, 1539
SfaNI	GCATC	3 cut(s)	393, 628, 1478
SfcI	CTRYAG	4 cut(s)	419, 536, 933, 1202
SinI	GGWCC	2 cut(s)	212, 2023
SmiMI	CAYNNNNRTG	2 cut(s)	566, 1801
SmlI	CTYRAG	3 cut(s)	86, 1001, 1009
SmoI	CTYRAG	3 cut(s)	86, 1001, 1009
SsiI	CCGC	4 cut(s)	1221, 1765, 1907, 2018
SspI	AATATT	1 cut(s)	1653
SspMI	CTAG	4 cut(s)	12, 621, 1599, 1929
StyD4I	CCNGG	5 cut(s)	147, 610, 669, 752, 1119
StyI	CCWWGG	1 cut(s)	729
TaiI	ACGT	4 cut(s)	174, 223, 1629, 1881
TaqI	TCGA	2 cut(s)	162, 1996
TatI	WGTACW	5 cut(s)	276, 516, 1021, 1558, 1889
TauI	GCSGC	1 cut(s)	1767
TfiI	GAWTC	3 cut(s)	725, 770, 2002
Tru1I	TTAA	3 cut(s)	92, 594, 1088
Tru9I	TTAA	3 cut(s)	92, 594, 1088
TscAI	CASTG	4 cut(s)	903, 931, 1471, 1825
TseFI	GTSAC	3 cut(s)	552, 1601, 1692
TseI	GCWGC	3 cut(s)	1037, 1767, 2015
Tsp45I	GTSAC	3 cut(s)	552, 1601, 1692
TspDTI	ATGAA	9 cut(s)	304, 308, 316, 411, 695, 828, 1086, 1645, 1740
TspGWI	ACGGA	2 cut(s)	110, 374
TspRI	CASTG	4 cut(s)	903, 931, 1471, 1825
Tth111I	GACNNNGTC	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	212, 2023
VspI	ATTAAT	1 cut(s)	594
XapI	RAATTY	5 cut(s)	53, 200, 467, 702, 1491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XmiI	GTMKAC	1 cut(s)	1977
XmnI	GAANNNNTTC	2 cut(s)	117, 435
XspI	CTAG	4 cut(s)	12, 621, 1599, 1929
ZraI	GACGTC	1 cut(s)	172
ZrmI	AGTACT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.