Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008732

Physical Location & Seq

Genomic Coordinates Reverse (-)

44011078 .. 44014550

Gene Structure 3473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0289900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCACTATGGATGGAGAAAGGCGCCGAACCCCAAACCGAAAGCGAAAAGGCTGACCTTGATGCCATCGCCGCCCTCAAAGAATCTGCTGCTATTGAACTCAAGGAGAAGGGCAACGAGTTTGTGAAAAAGGGTAAGAAGCATTACTCGGATGCCATAGACTGTTACACCAGGGCAATCAATAACCAAGCTTTGAGTGACCCAGAGACGTCTATTCTGTATTCGAATAGAGCCCATGTCAATCTTTTGCTTGGTAATTACAGACGTGCTCTTACTGATGCTGAGGAAGCAATTAGGCTCAGTAACACTAATGTCAAGGCATTTTACCGAGCTGCGAAAGCGTGTTTGTCATTGAACTTGTTGGCTGAATCGATTTCACATTGCAAAAATGGGCTTCAAATTGACCCCACTAATGAAGGGCTAGAGAAGCTATTAGGGCAGGTTGAGTCTAAGAAGATGGAACTTGAACAGCGCGAGGCTCAAGTCTCCAAAGCTCTTACTGAGGCTAAGGACATTGTTTCTGCAATTGAAAAAAGAGGCTTGAAGGTTGGGAAGCCAATGTATCAAGAACTTACTGGATCAAGAAAGCCTGTATTGGACAAGAATAGTATTCTTCATTGGCCTGTTCTTCTTTTGTATCCAGAGGTTATGTCAAGTGACTTTATCGAGGATTTCTGTGAGACGGAAATGTTCTCGGCTCATCTTGATATGATGTTTTCAGAAAGCGCCCCGCCTTTGCCATGGGACGAGAAACACAATTATACTCGTGATGCTGTTGAACTATTCTATGAAGCTAAATCAGGAGTTCCACTGTCAAAGACGAAGATTCTTCGTTGTCTCCTAGAGGGAACTCCAGCATCCAATCTGGAAAGCATGGTTGAGGAAAAAGATGCAACTGAAAATTCTAATTTTGGCAGCTCAGCAGGCAAAGGTTCCTCTAGATGGGTCAAAGTAAATGAGAAAAGAACCCTTTATGATATTCTGAAAGAAGCTAATTTCATTATTCAAGGGATCCCAGTGTTCGCTGTTGTTTCTAAAAAATCCAGCTTCTACAAAGAGTTCAAAGCCGGGGGCTGGGCTCTTCCAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0005856 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0015629 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031248 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033276 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID_NTD2 WD40

Protein Analysis

363

Amino Acids

40.5

Weight (kDa)

5.86

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Wheel	PF18972	200 - 268	2.3e-15	Cns1/TTC4 Wheel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25150 AT5G25150
fragaria_vesca	FvH4_2g41020 FvH4_2g41020 FvH4_2g41020 FvH4_2g41020 FvH4_2g41020
malus_domestica	MD00G1143300.v1.1 MD15G1039100.v1.1
prunus_persica	Prupe.1G392800_v2.0.a1 Prupe.1G392800_v2.0.a1
pyrus_communis	pycom08g04780
rosa_chinensis	RchiOBHm_Chr6g0299541
rosa_laevigata	RLG00000011417
rosa_multiflora	Rmu_sc0004064.1_g000008
rosa_roxburghii	Rroxscaffold_7G00168570
rosa_rugosa	Rorug06G0289700 Rorug06G0289800 Rorug06G0289900 Rorug06G0289900
rosa_samantha	Rh6AG401100 Rh6DG402200
rosa_wichuraiana	Rw6G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	23
AccII	CGCG	1 cut(s)	474
AciI	CCGC	2 cut(s)	72, 731
AclWI	GGATC	3 cut(s)	586, 1006, 1019
AcsI	RAATTY	1 cut(s)	901
AcyI	GRCGYC	2 cut(s)	24, 209
AfiI	CCNNNNNNNGG	2 cut(s)	942, 1074
AgsI	TTSAA	9 cut(s)	98, 355, 398, 467, 530, 544, 779, 1007, 1063
AjiI	CACGTC	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	170, 1084
AluBI	AGCT	8 cut(s)	191, 332, 430, 494, 794, 918, 992, 1047
AluI	AGCT	8 cut(s)	191, 332, 430, 494, 794, 918, 992, 1047
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	4 cut(s)	200, 490, 674, 842
AlwI	GGATC	3 cut(s)	586, 1006, 1019
AoxI	GGCC	1 cut(s)	620
ApeKI	GCWGC	3 cut(s)	89, 332, 915
ApoI	RAATTY	1 cut(s)	901
AspLEI	GCGC	3 cut(s)	26, 474, 728
AsuC2I	CCSGG	1 cut(s)	1069
AsuII	TTCGAA	1 cut(s)	224
BamHI	GGATCC	1 cut(s)	1011
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	2 cut(s)	235, 1081
BauI	CACGAG	1 cut(s)	765
Bbv12I	GWGCWC	1 cut(s)	271
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	76, 319, 927
BccI	CCATC	4 cut(s)	7, 74, 451, 936
BciT130I	CCWGG	2 cut(s)	172, 1086
BciVI	GTATCC	1 cut(s)	648
BcnI	CCSGG	1 cut(s)	1069
BcoDI	GTCTC	4 cut(s)	200, 490, 674, 842
BfaI	CTAG	3 cut(s)	422, 842, 939
BfoI	RGCGCY	2 cut(s)	27, 729
BfuAI	ACCTGC	1 cut(s)	430
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	4 cut(s)	72, 90, 333, 916
BlpI	GCTNAGC	1 cut(s)	919
BlsI	GCNGC	4 cut(s)	73, 91, 334, 917
Bme1390I	CCNGG	3 cut(s)	172, 1069, 1086
BmgBI	CACGTC	1 cut(s)	266
BmiI	GGNNCC	3 cut(s)	25, 934, 1013
BmrFI	CCNGG	3 cut(s)	172, 1069, 1086
BmrI	ACTGGG	1 cut(s)	1010
BmsI	GCATC	6 cut(s)	52, 142, 268, 760, 866, 880
BmuI	ACTGGG	1 cut(s)	1010
BpmI	CTGGAG	1 cut(s)	837
Bpu10I	CCTNAGC	2 cut(s)	282, 507
Bpu1102I	GCTNAGC	1 cut(s)	919
Bpu14I	TTCGAA	1 cut(s)	224
BpuEI	CTTGAG	2 cut(s)	86, 465
BpuMI	CCSGG	1 cut(s)	1069
Bsa29I	ATCGAT	1 cut(s)	371
BsaHI	GRCGYC	2 cut(s)	24, 209
BsaJI	CCNNGG	4 cut(s)	171, 740, 1068, 1085
Bsc4I	CCNNNNNNNGG	2 cut(s)	942, 1074
Bse1I	ACTGG	2 cut(s)	580, 1016
Bse3DI	GCAATG	1 cut(s)	379
BseBI	CCWGG	2 cut(s)	172, 1086
BseCI	ATCGAT	1 cut(s)	371
BseDI	CCNNGG	4 cut(s)	171, 740, 1068, 1085
BseGI	GGATG	3 cut(s)	18, 157, 857
BseLI	CCNNNNNNNGG	2 cut(s)	942, 1074
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	4 cut(s)	273, 313, 492, 933
BseNI	ACTGG	2 cut(s)	580, 1016
BseXI	GCAGC	3 cut(s)	76, 319, 927
BseYI	CCCAGC	1 cut(s)	1074
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	1 cut(s)	622
BshNI	GGYRCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	1068
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	2 cut(s)	942, 1074
BsmAI	GTCTC	4 cut(s)	200, 490, 674, 842
BsmBI	CGTCTC	2 cut(s)	200, 674
BsmFI	GGGAC	1 cut(s)	758
BsnI	GGCC	1 cut(s)	622
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	3 cut(s)	235, 271, 1081
Bsp143I	GATC	2 cut(s)	578, 1011
Bsp1720I	GCTNAGC	1 cut(s)	919
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	2 cut(s)	72, 731
BspANI	GGCC	1 cut(s)	622
BspCNI	CTCAG	4 cut(s)	274, 312, 493, 932
BspDI	ATCGAT	1 cut(s)	371
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	25, 934, 1013
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	3 cut(s)	586, 1006, 1019
BspQI	GCTCTTC	1 cut(s)	1086
BspT104I	TTCGAA	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	379
BsrI	ACTGG	2 cut(s)	580, 1016
BssECI	CCNNGG	4 cut(s)	171, 740, 1068, 1085
BssMI	GATC	2 cut(s)	578, 1011
BssNI	GRCGYC	2 cut(s)	24, 209
BssSI	CACGAG	1 cut(s)	765
BssT1I	CCWWGG	1 cut(s)	740
Bst2BI	CACGAG	1 cut(s)	765
Bst2UI	CCWGG	2 cut(s)	172, 1086
Bst4CI	ACNGT	2 cut(s)	164, 813
Bst6I	CTCTTC	1 cut(s)	1086
BstACI	GRCGYC	2 cut(s)	24, 209
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	925
BstDEI	CTNAG	6 cut(s)	282, 299, 450, 501, 507, 919
BstDSI	CCRYGG	1 cut(s)	740
BstF5I	GGATG	3 cut(s)	18, 157, 857
BstFNI	CGCG	1 cut(s)	474
BstH2I	RGCGCY	2 cut(s)	27, 729
BstHHI	GCGC	3 cut(s)	26, 474, 728
BstKTI	GATC	2 cut(s)	581, 1014
BstMAI	GTCTC	4 cut(s)	200, 490, 674, 842
BstMBI	GATC	2 cut(s)	578, 1011
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 287, 338, 427, 436, 924
BstNI	CCWGG	2 cut(s)	172, 1086
BstSCI	CCNGG	3 cut(s)	170, 1067, 1084
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	3 cut(s)	76, 319, 927
BstX2I	RGATCY	1 cut(s)	1011
BstYI	RGATCY	1 cut(s)	1011
Bsu15I	ATCGAT	1 cut(s)	371
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	622
BsuTUI	ATCGAT	1 cut(s)	371
BtgI	CCRYGG	1 cut(s)	740
BtgZI	GCGATG	1 cut(s)	52
BtrI	CACGTC	1 cut(s)	266
BtsCI	GGATG	3 cut(s)	18, 157, 857
BtsIMutI	CAGTG	2 cut(s)	809, 1023
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	925
CfoI	GCGC	3 cut(s)	26, 474, 728
ClaI	ATCGAT	1 cut(s)	371
CviAII	CATG	3 cut(s)	236, 741, 874
DdeI	CTNAG	6 cut(s)	282, 299, 450, 501, 507, 919
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	2 cut(s)	580, 1013
DpnII	GATC	2 cut(s)	578, 1011
Eam1104I	CTCTTC	1 cut(s)	1086
EarI	CTCTTC	1 cut(s)	1086
Eco130I	CCWWGG	1 cut(s)	740
Eco24I	GRGCYC	2 cut(s)	235, 1081
EcoRII	CCWGG	2 cut(s)	170, 1084
EcoT14I	CCWWGG	1 cut(s)	740
EcoT38I	GRGCYC	2 cut(s)	235, 1081
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	740
Esp3I	CGTCTC	2 cut(s)	200, 674
FaeI	CATG	3 cut(s)	239, 744, 877
FaqI	GGGAC	1 cut(s)	758
FatI	CATG	3 cut(s)	235, 740, 873
FauI	CCCGC	1 cut(s)	738
Fnu4HI	GCNGC	4 cut(s)	72, 90, 333, 916
FokI	GGATG	3 cut(s)	25, 164, 844
FriOI	GRGCYC	2 cut(s)	235, 1081
Fsp4HI	GCNGC	4 cut(s)	72, 90, 333, 916
FspBI	CTAG	3 cut(s)	422, 842, 939
GlaI	GCGC	3 cut(s)	25, 473, 727
GluI	GCNGC	4 cut(s)	72, 90, 333, 916
GsaI	CCCAGC	1 cut(s)	1078
GsuI	CTGGAG	1 cut(s)	837
HaeII	RGCGCY	2 cut(s)	27, 729
HaeIII	GGCC	1 cut(s)	622
HapII	CCGG	1 cut(s)	1068
HhaI	GCGC	3 cut(s)	26, 474, 728
Hin1I	GRCGYC	2 cut(s)	24, 209
Hin1II	CATG	3 cut(s)	239, 744, 877
Hin6I	GCGC	3 cut(s)	24, 472, 726
HinP1I	GCGC	3 cut(s)	24, 472, 726
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	4 cut(s)	83, 368, 446, 826
HpaII	CCGG	1 cut(s)	1068
Hpy188I	TCNGA	3 cut(s)	151, 721, 984
Hpy188III	TCNNGA	8 cut(s)	566, 582, 641, 704, 767, 801, 866, 939
HpyAV	CCTTC	3 cut(s)	103, 410, 538
HpyCH4III	ACNGT	2 cut(s)	164, 813
HpyCH4IV	ACGT	2 cut(s)	209, 265
HpyCH4V	TGCA	3 cut(s)	384, 524, 893
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 287, 338, 427, 436, 924
HpyF3I	CTNAG	6 cut(s)	282, 299, 450, 501, 507, 919
HpySE526I	ACGT	2 cut(s)	209, 265
Hsp92I	GRCGYC	2 cut(s)	24, 209
Hsp92II	CATG	3 cut(s)	239, 744, 877
HspAI	GCGC	3 cut(s)	24, 472, 726
KasI	GGCGCC	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	578, 1011
LguI	GCTCTTC	1 cut(s)	1086
Lsp1109I	GCAGC	3 cut(s)	76, 319, 927
LweI	GCATC	6 cut(s)	52, 142, 268, 760, 866, 880
MaeI	CTAG	3 cut(s)	422, 842, 939
MaeII	ACGT	2 cut(s)	209, 265
MaeIII	GTNAC	4 cut(s)	164, 197, 302, 656
MalI	GATC	2 cut(s)	580, 1013
MboI	GATC	2 cut(s)	578, 1011
MboII	GAAGA	6 cut(s)	466, 605, 620, 821, 835, 1073
MfeI	CAATTG	1 cut(s)	525
MflI	RGATCY	1 cut(s)	1011
MhlI	GDGCHC	3 cut(s)	235, 271, 1081
MluCI	AATT	8 cut(s)	256, 291, 399, 525, 757, 901, 907, 994
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	455
MspI	CCGG	1 cut(s)	1068
MspR9I	CCNGG	3 cut(s)	172, 1069, 1086
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	2 cut(s)	172, 1086
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	6 cut(s)	71, 287, 338, 427, 436, 924
NarI	GGCGCC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	1069
NcoI	CCATGG	1 cut(s)	740
NdeII	GATC	2 cut(s)	578, 1011
NlaIII	CATG	3 cut(s)	239, 744, 877
NlaIV	GGNNCC	3 cut(s)	25, 934, 1013
NmeAIII	GCCGAG	1 cut(s)	674
NmuCI	GTSAC	2 cut(s)	197, 656
NspV	TTCGAA	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	1086
PfeI	GAWTC	3 cut(s)	83, 368, 826
PkrI	GCNGC	4 cut(s)	73, 91, 334, 917
PleI	GAGTC	1 cut(s)	454
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	454
Psp6I	CCWGG	2 cut(s)	170, 1084
PspFI	CCCAGC	1 cut(s)	1074
PspGI	CCWGG	2 cut(s)	170, 1084
PspN4I	GGNNCC	3 cut(s)	25, 934, 1013
PsuI	RGATCY	1 cut(s)	1011
SapI	GCTCTTC	1 cut(s)	1086
SatI	GCNGC	4 cut(s)	72, 90, 333, 916
Sau3AI	GATC	2 cut(s)	578, 1011
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	3 cut(s)	172, 1069, 1086
SduI	GDGCHC	3 cut(s)	235, 271, 1081
SfaNI	GCATC	6 cut(s)	52, 142, 268, 760, 866, 880
SfoI	GGCGCC	1 cut(s)	25
SfuI	TTCGAA	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	101, 480
SmoI	CTYRAG	2 cut(s)	101, 480
Sse9I	AATT	8 cut(s)	256, 291, 399, 525, 757, 901, 907, 994
SsiI	CCGC	2 cut(s)	72, 731
SspDI	GGCGCC	1 cut(s)	23
SspMI	CTAG	3 cut(s)	422, 842, 939
StyD4I	CCNGG	3 cut(s)	170, 1067, 1084
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	2 cut(s)	164, 813
TaiI	ACGT	2 cut(s)	212, 268
TaqI	TCGA	3 cut(s)	224, 371, 666
TasI	AATT	8 cut(s)	256, 291, 399, 525, 757, 901, 907, 994
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	3 cut(s)	83, 368, 826
TscAI	CASTG	2 cut(s)	816, 1023
TseFI	GTSAC	2 cut(s)	197, 656
TseI	GCWGC	3 cut(s)	89, 332, 915
Tsp45I	GTSAC	2 cut(s)	197, 656
TspDTI	ATGAA	4 cut(s)	429, 605, 804, 988
TspGWI	ACGGA	1 cut(s)	698
TspRI	CASTG	2 cut(s)	816, 1023
XapI	RAATTY	1 cut(s)	901
XbaI	TCTAGA	1 cut(s)	938
XspI	CTAG	3 cut(s)	422, 842, 939
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.