Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008732

Physical Location & Seq

Genomic Coordinates Forward (+)

60621824 .. 60627731

Gene Structure 5908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26897

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2001 bp

ATGGACGAGGAGAAGCTTCAGAAATTCGTGGAAGCCTACCTGAAGAAGAAAGGGCTCAAGTTAACGGAGCACGCTCTCCAAGAAGAACTTCAGCCGTCTTCCTCCCCGGTCTCTCAATTCGACCCCGACGTCGTCAGGCAAATCCTCGCCTTCTCCGAATTTGAGGATGGTCCAGCACGTTACCAAGATGGATATGCCAAGTTGAGGTCATGGACTTATACTTCTCTGGATTTGTACCGGCATGAGTTGCTTCGTGTTCTTTATCCGGTATTCATTCATTGTTTCATGGATCTGGTTGCCAAAGGTCATATTCAAGAAGCTCGGACATTTTTCAATAGCTTCCGTGAAGACCATGAAATGATGCACCTACGAGATCTACAGAAGTTGGAAGGAGTTCTTTCTCCCTCTCATTTAGAGGAGATGGAATTTGCTCATTCTCTTAGGCAAAGCAAAGTGAACATAAAGATATGTCAGTACTCCTACGAGCTTCTGCTACAGTTTTTGCACAAGTCACAGTCCACCACAATGCTTGGGATTATCAATGAGCATATTAATTTCCAAGTTTCTCCTGGACAACCTAGCTCAATTACTGATGATGCTGAGGCTGTAACACTTACTGGAGGCAGCCAGGAGTCGGCTAATCAAATAAACCAGAAGGAAATTCATTGGGGGTTGCTTGAAGATTCCTTGGAAGAACGCTTGGAAAAGGCCGGGGGAATGGCTTTAGATTCTGAAAAAGCAGAAGGGGAAACCAAAGAAGGGGAGGGTGATGAAAATAAGAAAAAATCAATTGAAGGAGGTAAACAGGGTGCTTCAATCAAAAAGCAAAAAAAGGACAAGGCTGTTAGTGCAACAGTGAAAAGTGCACGCCCCGAGGCAACCACTGTACCTACAGCACCACGAGTCAAACCAGAACTTACTTTGCCAGTAATTCCAACAGAAGTTGAACAGTCTATTCTTGAGGACTTGAGAAACCGTGTACAGTTGAGTAGTGCTGCGTTGCCATCTGTCAGCTTTTATACATTTATCAACACACACAATGGGTTAAATTGTTCATCTATATCCCATGATGGATCCCTGGTTGCTGGTGGATTTTCTGACTCGTCGCTGAAGGTCTGGGATATGGCAAAGATAGGGCAACAATATGTTGGTTCAATTCTGCAGGGTGAAAATGGTACCGCTTCAAGTGAACAAGTTGCTGGATCAAATGGTAGGAAAAGGCCATATACATTGTTTCAGGGTCATTCAGGGCCAGTTTATTCTGCTACTTTCAATCCTCTGAGTGATTTTATACTTTCCTCTTCAGCAGACTCAACTATTCGGTTGTGGAGCACAAACCTAAATTCCAATCTTGTTTGCTACAAGGGTCATAACTACCCTGTTTGGGATGTTCAGTTTAGCCCAGTAGGTCATTATTTTGCCAGTGCATCACATGATAGAACAGCAAGAATTTGGTCTATGGACAGAATACAGCCTCTGAGAATAATGGCAGGGCACTTATCTGATGTTGATTGTGTACAATGGCATTCCAACTGCAACTACATTGCAACTGGTTCTAGTGACAAAACAGTTAGATTATGGGACGTGCAGAGTGGAGAGTGTGTCCGAATATTCATTGGCCACAGGAGTATGATTTTATCTCTTGCAATGTCACCTGATGGTCGGTACATGGCTTCGGGTGATGAAGATGGCTCAATCATGATGTGGGATCTTTCAAGTGGCCGCTGCGTTACACCTTTGATGGGTCATACCTCATGCGTATGGACATTGGCTTTCAGTGGTGAAGGTTCACTCCTTGCTTCTGGATCTGCTGATTGCACGGTAAAATTATGGGACGTAACTGCAAGTACAAAGTTGCCAAAAGCTGAAGAAAAAAGTGGAAGTGCTAGCAGACTGAGGTCATTGAAGACTTTACCAACCAAGTGTACGCCTGTCTACTCCTTGCGGTTTTCTCGAAGGAATCTTTTGTTTGCAGCCGGGGTCCTTTCAAAAACTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0005856 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0015629 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031248 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033276 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID_NTD2 WD40

Protein Analysis

666

Amino Acids

73.85

Weight (kDa)

6.25

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID_NTD2	PF04494	56 - 184	2e-45	WD40 associated region in TFIID subunit, NTD2 domain
Beta-prop_WDR3_1st	PF25173	342 - 529	1.5e-24	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	342 - 462	1.5e-10	WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	347 - 488	5.4e-10	CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	408 - 549	8.5e-14	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	409 - 487	2.1e-14	THOC3 beta-propeller domain
WD40	PF00400	409 - 444	3.4e-08	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	410 - 528	1.5e-18	WDR3 second beta-propeller domain
WD40_Gbeta	PF25391	410 - 489	2.1e-06	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	410 - 571	8.1e-35	Prp19 WD40 domain
EIF3I	PF24805	411 - 489	2.6e-09	EIF3I
Beta-prop_WDR36-Utp21_2nd	PF25168	411 - 480	2.5e-07	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	411 - 536	2e-15	CDC20/Fizzy WD40 domain
Beta-prop_IFT122_1st	PF23381	412 - 555	1e-05	IFT122 first beta-propeller
Beta-prop_EML_2	PF23414	417 - 516	1.9e-06	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	419 - 575	6.5e-15	WDR55
WD40	PF00400	452 - 486	8.6e-09	WD domain, G-beta repeat
EIF3I	PF24805	454 - 536	2.8e-10	EIF3I
Beta-prop_WDR5	PF25175	455 - 617	4.1e-47	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	457 - 542	3.4e-20	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	458 - 622	4e-27	CDC20/Fizzy WD40 domain
WDR90_beta-prop_4th	PF23342	461 - 577	7.2e-08	WDR90, 4th beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	461 - 571	1.4e-14	MABP1/WDR62 second WD40 domain
Beta-prop_WDR19_1st	PF23389	469 - 620	4.1e-09	WDR19 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	473 - 576	4.6e-13	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	477 - 611	1.9e-11	WDR36/Utp21 first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	479 - 562	3.5e-10	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	480 - 578	5.3e-23	THOC3 beta-propeller domain
WD40	PF00400	491 - 528	3.8e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	493 - 578	3.1e-10	CAF1B/HIR1 beta-propeller domain
WD40_Gbeta	PF25391	494 - 619	1.5e-21	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	501 - 578	7.6e-15	WDHD1 first WD40 domain
Beta-prop_IFT140_1st	PF23383	501 - 572	1.2e-07	IFT140 first beta-propeller
Beta-prop_WDR3_2nd	PF25172	505 - 614	5.4e-20	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	511 - 631	1.1e-15	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_SCAP	PF24017	515 - 623	6.3e-09	SCAP Beta-propeller
Beta-prop_WDR3_1st	PF25173	523 - 628	1.7e-26	WDR3 first beta-propeller domain
WD40	PF00400	532 - 570	3.3e-10	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	536 - 619	1.9e-09	TEP-1 second beta-propeller
WD40_MABP1-WDR62_1st	PF24780	537 - 614	7e-06	MABP1/WDR62 first WD40 domain
Beta-prop_THOC3	PF25174	538 - 624	6.1e-19	THOC3 beta-propeller domain
EIF3I	PF24805	540 - 626	1.7e-07	EIF3I
Beta-prop_EML	PF23409	543 - 616	4.1e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	545 - 612	2.1e-07	MABP1/WDR62 second WD40 domain
WD40_Prp19	PF24814	548 - 619	5e-15	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	562 - 617	2.4e-06	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	574 - 612	5.5e-11	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

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Orthologous Genes (Group: OG0008732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25150 AT5G25150
fragaria_vesca	FvH4_2g41020 FvH4_2g41020 FvH4_2g41020 FvH4_2g41020 FvH4_2g41020
malus_domestica	MD00G1143300.v1.1 MD15G1039100.v1.1
prunus_persica	Prupe.1G392800_v2.0.a1 Prupe.1G392800_v2.0.a1
pyrus_communis	pycom08g04780
rosa_chinensis	RchiOBHm_Chr6g0299541
rosa_laevigata	RLG00000011417
rosa_multiflora	Rmu_sc0004064.1_g000008
rosa_roxburghii	Rroxscaffold_7G00168570
rosa_rugosa	Rorug06G0289700 Rorug06G0289800 Rorug06G0289900 Rorug06G0289900
rosa_samantha	Rh6AG401100 Rh6DG402200
rosa_wichuraiana	Rw6G035100

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	132
Acc65I	GGTACC	1 cut(s)	1175
AccB1I	GGYRCC	1 cut(s)	1175
AccI	GTMKAC	1 cut(s)	1935
AciI	CCGC	3 cut(s)	1179, 1723, 1945
AclWI	GGATC	6 cut(s)	297, 1068, 1081, 1210, 1716, 1813
AcoI	YGGCCR	2 cut(s)	1618, 1720
AcsI	RAATTY	6 cut(s)	23, 158, 425, 660, 1342, 1449
AcuI	CTGAAG	5 cut(s)	62, 74, 1130, 1287, 1887
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	9 cut(s)	236, 476, 888, 981, 1177, 1518, 1667, 1849, 1927
AfiI	CCNNNNNNNGG	5 cut(s)	204, 634, 759, 1384, 1742
AjiI	CACGTC	1 cut(s)	1585
AjnI	CCWGG	3 cut(s)	568, 627, 1077
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	7 cut(s)	16, 320, 339, 487, 582, 1014, 1865
AluI	AGCT	7 cut(s)	16, 320, 339, 487, 582, 1014, 1865
Alw21I	GWGCWC	3 cut(s)	72, 868, 1334
Alw26I	GTCTC	1 cut(s)	115
Alw44I	GTGCAC	1 cut(s)	864
AlwI	GGATC	6 cut(s)	297, 1068, 1081, 1210, 1716, 1813
AlwNI	CAGNNNCTG	1 cut(s)	1477
Ama87I	CYCGRG	1 cut(s)	872
AoxI	GGCC	5 cut(s)	708, 1220, 1250, 1618, 1720
ApaLI	GTGCAC	1 cut(s)	864
ApeKI	GCWGC	4 cut(s)	624, 995, 1725, 1973
ApoI	RAATTY	6 cut(s)	23, 158, 425, 660, 1342, 1449
AseI	ATTAAT	1 cut(s)	552
Asp700I	GAANNNNTTC	2 cut(s)	87, 393
Asp718I	GGTACC	1 cut(s)	1175
AspS9I	GGNCC	3 cut(s)	170, 1250, 1981
AsuC2I	CCSGG	3 cut(s)	107, 712, 1978
AsuHPI	GGTGA	5 cut(s)	779, 1178, 1644, 1691, 1793
AsuNHI	GCTAGC	1 cut(s)	1886
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	2 cut(s)	170, 1981
BaeGI	GKGCMC	2 cut(s)	868, 1497
BaeI	ACNNNNGTAYC	2 cut(s)	870, 903
BalI	TGGCCA	1 cut(s)	1620
BamHI	GGATCC	1 cut(s)	1073
BanI	GGYRCC	1 cut(s)	1175
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	900
BbsI	GAAGAC	3 cut(s)	90, 354, 1913
Bbv12I	GWGCWC	3 cut(s)	72, 868, 1334
BbvCI	CCTCAGC	1 cut(s)	600
BbvI	GCAGC	4 cut(s)	636, 982, 1712, 1985
BccI	CCATC	8 cut(s)	161, 182, 415, 1012, 1064, 1652, 1682, 1735
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	3 cut(s)	570, 629, 1079
BcnI	CCSGG	3 cut(s)	107, 712, 1978
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	3 cut(s)	579, 1557, 1887
BfmI	CTRYAG	4 cut(s)	377, 494, 891, 1160
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	5 cut(s)	625, 996, 1723, 1726, 1974
BlsI	GCNGC	5 cut(s)	626, 997, 1724, 1727, 1975
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	6 cut(s)	107, 570, 629, 712, 1079, 1978
Bme18I	GGWCC	2 cut(s)	170, 1981
BmeT110I	CYCGRG	1 cut(s)	872
BmgBI	CACGTC	1 cut(s)	1585
BmgT120I	GGNCC	3 cut(s)	170, 1250, 1981
BmiI	GGNNCC	3 cut(s)	1075, 1177, 1982
BmrFI	CCNGG	6 cut(s)	107, 570, 629, 712, 1079, 1978
BmrI	ACTGGG	1 cut(s)	1397
BmsI	GCATC	3 cut(s)	351, 586, 1436
BmtI	GCTAGC	1 cut(s)	1890
BmuI	ACTGGG	1 cut(s)	1397
BoxI	GACNNNNGTC	1 cut(s)	1897
BpiI	GAAGAC	3 cut(s)	90, 354, 1913
BpmI	CTGGAG	1 cut(s)	639
Bpu10I	CCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	3 cut(s)	41, 980, 988
BpuMI	CCSGG	3 cut(s)	107, 712, 1978
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	6 cut(s)	105, 687, 711, 873, 1077, 1977
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	1587, 1617
Bsc4I	CCNNNNNNNGG	5 cut(s)	204, 634, 759, 1384, 1742
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	6 cut(s)	622, 926, 1253, 1403, 1422, 1555
Bse3DI	GCAATG	2 cut(s)	1542, 1653
BseBI	CCWGG	3 cut(s)	570, 629, 1079
BseDI	CCNNGG	6 cut(s)	105, 687, 711, 873, 1077, 1977
BseGI	GGATG	2 cut(s)	172, 1393
BseLI	CCNNNNNNNGG	5 cut(s)	204, 634, 759, 1384, 1742
BseMI	GCAATG	2 cut(s)	1542, 1653
BseMII	CTCAG	4 cut(s)	591, 1271, 1469, 1886
BseNI	ACTGG	6 cut(s)	622, 926, 1253, 1403, 1422, 1555
BseRI	GAGGAG	2 cut(s)	23, 431
BseSI	GKGCMC	2 cut(s)	868, 1497
BseXI	GCAGC	4 cut(s)	636, 982, 1712, 1985
BsgI	GTGCAG	1 cut(s)	1607
BshFI	GGCC	5 cut(s)	710, 1222, 1252, 1620, 1722
BshNI	GGYRCC	1 cut(s)	1175
BsiHKAI	GWGCWC	3 cut(s)	72, 868, 1334
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	5 cut(s)	107, 238, 266, 711, 1977
BslFI	GGGAC	2 cut(s)	1595, 1847
BslI	CCNNNNNNNGG	5 cut(s)	204, 634, 759, 1384, 1742
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	2 cut(s)	1595, 1847
BsmI	GAATGC	1 cut(s)	1525
BsnI	GGCC	5 cut(s)	710, 1222, 1252, 1620, 1722
Bso31I	GGTCTC	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	872
Bsp1286I	GDGCHC	5 cut(s)	57, 72, 868, 1334, 1497
Bsp1407I	TGTACA	2 cut(s)	979, 1516
Bsp143I	GATC	6 cut(s)	289, 373, 1073, 1202, 1708, 1805
BspACI	CCGC	3 cut(s)	1179, 1723, 1945
BspANI	GGCC	5 cut(s)	710, 1222, 1252, 1620, 1722
BspCNI	CTCAG	4 cut(s)	592, 1272, 1470, 1887
BspHI	TCATGA	1 cut(s)	1698
BspLI	GGNNCC	3 cut(s)	1075, 1177, 1982
BspMAI	CTGCAG	1 cut(s)	1164
BspOI	GCTAGC	1 cut(s)	1890
BspPI	GGATC	6 cut(s)	297, 1068, 1081, 1210, 1716, 1813
BspT107I	GGYRCC	1 cut(s)	1175
BspTNI	GGTCTC	1 cut(s)	115
BsrDI	GCAATG	2 cut(s)	1542, 1653
BsrFI	RCCGGY	1 cut(s)	237
BsrGI	TGTACA	2 cut(s)	979, 1516
BsrI	ACTGG	6 cut(s)	622, 926, 1253, 1403, 1422, 1555
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	6 cut(s)	105, 687, 711, 873, 1077, 1977
BssMI	GATC	6 cut(s)	289, 373, 1073, 1202, 1708, 1805
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	900
BssT1I	CCWWGG	1 cut(s)	687
Bst2BI	CACGAG	1 cut(s)	900
Bst2UI	CCWGG	3 cut(s)	570, 629, 1079
Bst6I	CTCTTC	1 cut(s)	1306
BstACI	GRCGYC	1 cut(s)	129
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstAUI	TGTACA	2 cut(s)	979, 1516
BstC8I	GCNNGC	3 cut(s)	72, 868, 1888
BstDEI	CTNAG	5 cut(s)	440, 600, 1280, 1478, 1895
BstF5I	GGATG	2 cut(s)	172, 1393
BstKTI	GATC	6 cut(s)	292, 376, 1076, 1205, 1711, 1808
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	6 cut(s)	289, 373, 1073, 1202, 1708, 1805
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 848
BstNI	CCWGG	3 cut(s)	570, 629, 1079
BstPAI	GACNNNNGTC	1 cut(s)	1897
BstSCI	CCNGG	6 cut(s)	105, 568, 627, 710, 1077, 1976
BstSFI	CTRYAG	4 cut(s)	377, 494, 891, 1160
BstSLI	GKGCMC	2 cut(s)	868, 1497
BstV1I	GCAGC	4 cut(s)	636, 982, 1712, 1985
BstV2I	GAAGAC	3 cut(s)	90, 354, 1913
BstX2I	RGATCY	5 cut(s)	289, 373, 1073, 1708, 1805
BstYI	RGATCY	5 cut(s)	289, 373, 1073, 1708, 1805
BsuRI	GGCC	5 cut(s)	710, 1222, 1252, 1620, 1722
BtrI	CACGTC	1 cut(s)	1585
BtsCI	GGATG	2 cut(s)	172, 1393
BtsIMutI	CAGTG	4 cut(s)	861, 882, 1429, 1783
Cac8I	GCNNGC	3 cut(s)	72, 868, 1888
CaiI	CAGNNNCTG	1 cut(s)	1477
CciI	TCATGA	1 cut(s)	1698
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	170, 1250, 1981
Csp6I	GTAC	9 cut(s)	235, 475, 887, 980, 1176, 1517, 1666, 1848, 1926
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviAII	CATG	9 cut(s)	210, 242, 286, 353, 1067, 1433, 1669, 1699, 1755
CviQI	GTAC	9 cut(s)	235, 475, 887, 980, 1176, 1517, 1666, 1848, 1926
DdeI	CTNAG	5 cut(s)	440, 600, 1280, 1478, 1895
DpnI	GATC	6 cut(s)	291, 375, 1075, 1204, 1710, 1807
DpnII	GATC	6 cut(s)	289, 373, 1073, 1202, 1708, 1805
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	2 cut(s)	1618, 1720
Eam1104I	CTCTTC	1 cut(s)	1306
EarI	CTCTTC	1 cut(s)	1306
Eco130I	CCWWGG	1 cut(s)	687
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	115
Eco47I	GGWCC	2 cut(s)	170, 1981
Eco57I	CTGAAG	5 cut(s)	62, 74, 1130, 1287, 1887
Eco88I	CYCGRG	1 cut(s)	872
EcoO109I	RGGNCCY	1 cut(s)	1981
EcoRII	CCWGG	3 cut(s)	568, 627, 1077
EcoT14I	CCWWGG	1 cut(s)	687
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	687
FaeI	CATG	9 cut(s)	213, 245, 289, 356, 1070, 1436, 1672, 1702, 1758
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 381, 413
FaqI	GGGAC	2 cut(s)	1595, 1847
FatI	CATG	9 cut(s)	209, 241, 285, 352, 1066, 1432, 1668, 1698, 1754
FblI	GTMKAC	1 cut(s)	1935
Fnu4HI	GCNGC	5 cut(s)	625, 996, 1723, 1726, 1974
FokI	GGATG	2 cut(s)	179, 1400
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	5 cut(s)	625, 996, 1723, 1726, 1974
FspBI	CTAG	3 cut(s)	579, 1557, 1887
GluI	GCNGC	5 cut(s)	625, 996, 1723, 1726, 1974
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	5 cut(s)	710, 1222, 1252, 1620, 1722
HapII	CCGG	5 cut(s)	107, 238, 266, 711, 1977
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	9 cut(s)	213, 245, 289, 356, 1070, 1436, 1672, 1702, 1758
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	7 cut(s)	632, 683, 728, 903, 1100, 1310, 1960
HpaI	GTTAAC	1 cut(s)	63
HpaII	CCGG	5 cut(s)	107, 238, 266, 711, 1977
HphI	GGTGA	5 cut(s)	779, 1178, 1644, 1691, 1793
Hpy188I	TCNGA	9 cut(s)	21, 157, 324, 733, 1099, 1281, 1479, 1504, 1607
Hpy188III	TCNNGA	6 cut(s)	227, 314, 959, 1699, 1803, 1953
Hpy99I	CGWCG	3 cut(s)	131, 134, 1108
HpyAV	CCTTC	9 cut(s)	160, 383, 649, 737, 752, 788, 1105, 1778, 1950
HpyCH4IV	ACGT	4 cut(s)	129, 178, 1584, 1836
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 848
HpyF3I	CTNAG	5 cut(s)	440, 600, 1280, 1478, 1895
HpySE526I	ACGT	4 cut(s)	129, 178, 1584, 1836
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	9 cut(s)	213, 245, 289, 356, 1070, 1436, 1672, 1702, 1758
KpnI	GGTACC	1 cut(s)	1179
KspAI	GTTAAC	1 cut(s)	63
Kzo9I	GATC	6 cut(s)	289, 373, 1073, 1202, 1708, 1805
LmnI	GCTCC	2 cut(s)	67, 1329
Lsp1109I	GCAGC	4 cut(s)	636, 982, 1712, 1985
LweI	GCATC	3 cut(s)	351, 586, 1436
MaeI	CTAG	3 cut(s)	579, 1557, 1887
MaeII	ACGT	4 cut(s)	129, 178, 1584, 1836
MaeIII	GTNAC	7 cut(s)	179, 510, 607, 1559, 1650, 1729, 1837
MalI	GATC	6 cut(s)	291, 375, 1075, 1204, 1710, 1807
MboI	GATC	6 cut(s)	289, 373, 1073, 1202, 1708, 1805
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	5 cut(s)	289, 373, 1073, 1708, 1805
MhlI	GDGCHC	5 cut(s)	57, 72, 868, 1334, 1497
MlsI	TGGCCA	1 cut(s)	1620
MluNI	TGGCCA	1 cut(s)	1620
MlyI	GAGTC	4 cut(s)	641, 912, 1094, 1304
MmeI	TCCRAC	3 cut(s)	366, 959, 1554
Mox20I	TGGCCA	1 cut(s)	1620
MroXI	GAANNNNTTC	2 cut(s)	87, 393
MscI	TGGCCA	1 cut(s)	1620
MseI	TTAA	3 cut(s)	62, 552, 1046
MslI	CAYNNNNRTG	2 cut(s)	524, 1759
Msp20I	TGGCCA	1 cut(s)	1620
MspA1I	CMGCKG	1 cut(s)	1725
MspI	CCGG	5 cut(s)	107, 238, 266, 711, 1977
MspR9I	CCNGG	6 cut(s)	107, 570, 629, 712, 1079, 1978
MunI	CAATTG	1 cut(s)	789
Mva1269I	GAATGC	1 cut(s)	1525
MvaI	CCWGG	3 cut(s)	570, 629, 1079
MwoI	GCNNNNNNNGC	2 cut(s)	247, 848
NciI	CCSGG	3 cut(s)	107, 712, 1978
NdeII	GATC	6 cut(s)	289, 373, 1073, 1202, 1708, 1805
NheI	GCTAGC	1 cut(s)	1886
NlaIII	CATG	9 cut(s)	213, 245, 289, 356, 1070, 1436, 1672, 1702, 1758
NlaIV	GGNNCC	3 cut(s)	1075, 1177, 1982
NmuCI	GTSAC	3 cut(s)	510, 1559, 1650
PagI	TCATGA	1 cut(s)	1698
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 153
PctI	GAATGC	1 cut(s)	1525
PdmI	GAANNNNTTC	2 cut(s)	87, 393
PfeI	GAWTC	3 cut(s)	683, 728, 1960
PflFI	GACNNNGTC	1 cut(s)	131
PfoI	TCCNGGA	1 cut(s)	568
PkrI	GCNGC	5 cut(s)	626, 997, 1724, 1727, 1975
PleI	GAGTC	4 cut(s)	640, 911, 1094, 1304
PpsI	GAGTC	4 cut(s)	640, 911, 1094, 1304
PpuMI	RGGWCCY	1 cut(s)	1981
PshAI	GACNNNNGTC	1 cut(s)	1897
PshBI	ATTAAT	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	1981
Psp6I	CCWGG	3 cut(s)	568, 627, 1077
PspGI	CCWGG	3 cut(s)	568, 627, 1077
PspN4I	GGNNCC	3 cut(s)	1075, 1177, 1982
PspPI	GGNCC	3 cut(s)	170, 1250, 1981
PspPPI	RGGWCCY	1 cut(s)	1981
PstI	CTGCAG	1 cut(s)	1164
PstNI	CAGNNNCTG	1 cut(s)	1477
PsuI	RGATCY	5 cut(s)	289, 373, 1073, 1708, 1805
PsyI	GACNNNGTC	1 cut(s)	131
RsaI	GTAC	9 cut(s)	236, 476, 888, 981, 1177, 1518, 1667, 1849, 1927
RsaNI	GTAC	9 cut(s)	235, 475, 887, 980, 1176, 1517, 1666, 1848, 1926
RseI	CAYNNNNRTG	2 cut(s)	524, 1759
SaqAI	TTAA	3 cut(s)	62, 552, 1046
SatI	GCNGC	5 cut(s)	625, 996, 1723, 1726, 1974
Sau3AI	GATC	6 cut(s)	289, 373, 1073, 1202, 1708, 1805
Sau96I	GGNCC	3 cut(s)	170, 1250, 1981
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	4 cut(s)	641, 912, 1094, 1304
ScrFI	CCNGG	6 cut(s)	107, 570, 629, 712, 1079, 1978
SduI	GDGCHC	5 cut(s)	57, 72, 868, 1334, 1497
SfaNI	GCATC	3 cut(s)	351, 586, 1436
SfcI	CTRYAG	4 cut(s)	377, 494, 891, 1160
SinI	GGWCC	2 cut(s)	170, 1981
SmiMI	CAYNNNNRTG	2 cut(s)	524, 1759
SmlI	CTYRAG	3 cut(s)	56, 959, 967
SmoI	CTYRAG	3 cut(s)	56, 959, 967
SsiI	CCGC	3 cut(s)	1179, 1723, 1945
SspI	AATATT	1 cut(s)	1611
SspMI	CTAG	3 cut(s)	579, 1557, 1887
StyD4I	CCNGG	6 cut(s)	105, 568, 627, 710, 1077, 1976
StyI	CCWWGG	1 cut(s)	687
TaiI	ACGT	4 cut(s)	132, 181, 1587, 1839
TaqI	TCGA	2 cut(s)	120, 1954
TatI	WGTACW	4 cut(s)	474, 979, 1516, 1847
TauI	GCSGC	1 cut(s)	1725
TfiI	GAWTC	3 cut(s)	683, 728, 1960
Tru1I	TTAA	3 cut(s)	62, 552, 1046
Tru9I	TTAA	3 cut(s)	62, 552, 1046
TscAI	CASTG	4 cut(s)	861, 889, 1429, 1783
TseFI	GTSAC	3 cut(s)	510, 1559, 1650
TseI	GCWGC	4 cut(s)	624, 995, 1725, 1973
Tsp45I	GTSAC	3 cut(s)	510, 1559, 1650
TspDTI	ATGAA	9 cut(s)	262, 266, 274, 369, 653, 786, 1044, 1603, 1698
TspGWI	ACGGA	2 cut(s)	80, 332
TspRI	CASTG	4 cut(s)	861, 889, 1429, 1783
Tth111I	GACNNNGTC	1 cut(s)	131
VneI	GTGCAC	1 cut(s)	864
VpaK11BI	GGWCC	2 cut(s)	170, 1981
VspI	ATTAAT	1 cut(s)	552
XapI	RAATTY	6 cut(s)	23, 158, 425, 660, 1342, 1449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	566
XmiI	GTMKAC	1 cut(s)	1935
XmnI	GAANNNNTTC	2 cut(s)	87, 393
XspI	CTAG	3 cut(s)	579, 1557, 1887
ZraI	GACGTC	1 cut(s)	130
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.