Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014673

Physical Location & Seq

Genomic Coordinates Reverse (-)

5596668 .. 5599923

Gene Structure 3256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1081500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGTGTTCAGAAGTGCTTGACCCTGATGGAACTGACTGCCAAGACAACGGTGATTCCGGAGACTGGATGGTATATTGGGATTCTTACTACATGAGAAATTACTTCTATAATATCAAAACACATACTTCCACATGGTATCCACCCCCAGGCATGGAATATTTAGCATCTATTGACGCCATATGTAAACCAAATGATGTGATTTCTGAAGTAATGGAGATTGATGTTAGCACTGATTCAAAGGCAACAAATTTTTGTGGTGCGAGTAAAACTGATTCATTTCAAGAATCAATTACTCATGGTGTTTCACAGTGTCAGCCAAATCATGAGATCTCCGGGGGGATTGAACTTTCTGTTGACACTTCTATGTCTGATACCACTTTGTCAACTGTCACTGTAAGCAGATGTCCGGTACAGTCAGATGAAATCAATGAGAACAATAACACCTGCAACGATGGGAACCCATCATGCTTCTTCTCAGATGTCCAGGATCATATCGCTAGTATCAGAAACAAAATCAAGCAGTTGATTTCTGATGATGTCTGCAACAGTGGTTTGCAATCAATTCTTGCTGAACAGATTGATGAACAAAATACTATTGAACTCAATAATGAGCCTAATGAACCTAATTTTTGTGAGGAAACTCTCAAAGATTGCGAAGATTTTGACGCATTTCAAATATTAAATACAAGCAGCTTGTCCCATACATACATTGATGAAGTGTCTGAGGATAGTAATATGTATTCAGGAAATGAAGTTTTGGCAACAAACCAGTTGGAAATACAGCTTGACCCTGCTGTACAAAAACGGAAGAAGAAAGTGAGAAGAAAGAAAATTCAGGGAAAGTTATCTAATGAGAACAAAGAGCTTCTATTTGAAGAGTTGTTCAAAGAGTTTTCTGCTGATATGGGAAAATATTGGTGTCAACGGTACTTATTATTCTCCAAATACGATGATGGTATAAAAATGGATGAGGAAGGATGGTTCTCTGTCACTCCAGAGCTTCTAGCTAGGCATCATGCAGAACGATGTGGTAGTGATGTCATCATTGACTGTTTTACTGGAGTTGGTGGGAATTCCATCCAATTAGCACAGATAAGCAAACATGTAATTGCAATTGATATTGATCCAACGAAGATTGATTATGCACAGCGTAATGCTGCCATCTATGGGGTTGATGACAGGATAGATTTCATAACGGGGGACTTTTTTCGCTTGGCACCAAAGCTGAAGGCAGACACGGTCTTTTTGTCACCCCCGTGGGGAGGACCTGGTTATGCAAAAGTAGAGACATACGACATGAAGACAATGCTTAAGCCACATGATGGATATTTTCTCTTTAACATCGCAAAGGAAGTTGCTTCTAGGATTGTCATGTTTCTCCCAAGAAATGTTGATATCAACCAATTAGCAGAGATCGCTCTATCGGGGTCTCGGCCATGGTCACTAGAGGTTGAGAAAAACTTCTTAAATGGCAAGTTGAAGGGGATAACTGCTTACTTCAGTGACATGGCCAGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0032259 GO:0034641 GO:0036260 GO:0036261 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071164 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Methyltransf_15 WW

Protein Analysis

507

Amino Acids

57.03

Weight (kDa)

4.58

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM5-TYW2_MTfase	PF02475	345 - 417	1.3e-09	TRM5/TYW2 methyltransferase domain
Methyltransf_15	PF09445	347 - 501	3.1e-42	RNA cap guanine-N2 methyltransferase
Methyltransf_31	PF13847	347 - 416	1.7e-07	Methyltransferase domain
Methyltransf_25	PF13649	348 - 416	2.7e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34310 FvH4_2g34310
malus_domestica	MD15G1081500.v1.1
prunus_persica	Prupe.1G434300_v2.0.a1 Prupe.1G434300_v2.0.a1 Prupe.1G434300_v2.0.a1
pyrus_communis	pycom15g07620 pycom15g07630
rosa_chinensis	RchiOBHm_Chr6g0308051
rosa_laevigata	RLG00000010672
rosa_multiflora	Rmu_sc0002624.1_g000003
rosa_roxburghii	Rroxscaffold_7G00160630
rosa_rugosa	Rorug06G0363400
rosa_samantha	Rh6AG472300 Rh6BG483400 Rh6DG474700
rosa_wichuraiana	Rw6G041220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	452
Acc36I	ACCTGC	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	1216
AccB7I	CCANNNNNTGG	1 cut(s)	1322
AccIII	TCCGGA	1 cut(s)	56
AclWI	GGATC	2 cut(s)	495, 1118
AcoI	YGGCCR	2 cut(s)	1433, 1509
AcsI	RAATTY	3 cut(s)	247, 831, 1072
AcuI	CTGAAG	3 cut(s)	225, 1247, 1483
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	3 cut(s)	411, 798, 929
AfiI	CCNNNNNNNGG	7 cut(s)	63, 146, 151, 1167, 1259, 1262, 1322
AflII	CTTAAG	1 cut(s)	1310
AflIII	ACRYGT	1 cut(s)	1102
AgsI	TTSAA	8 cut(s)	237, 281, 344, 599, 674, 875, 886, 1480
AjnI	CCWGG	3 cut(s)	145, 483, 1267
AleI	CACNNNNGTG	1 cut(s)	1255
AloI	GAACNNNNNNTCC	2 cut(s)	965, 997
AluBI	AGCT	6 cut(s)	693, 784, 865, 1000, 1007, 1225
AluI	AGCT	6 cut(s)	693, 784, 865, 1000, 1007, 1225
Alw26I	GTCTC	3 cut(s)	54, 1280, 1434
AlwI	GGATC	2 cut(s)	495, 1118
Aor13HI	TCCGGA	1 cut(s)	56
AoxI	GGCC	2 cut(s)	1433, 1509
ApeKI	GCWGC	2 cut(s)	690, 1157
ApoI	RAATTY	3 cut(s)	247, 831, 1072
Asp700I	GAANNNNTTC	1 cut(s)	1460
AspS9I	GGNCC	1 cut(s)	1265
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	62, 1242
AvaII	GGWCC	1 cut(s)	1265
BalI	TGGCCA	1 cut(s)	1511
BanI	GGYRCC	1 cut(s)	1216
BbsI	GAAGAC	1 cut(s)	1307
BbvI	GCAGC	2 cut(s)	702, 1144
BccI	CCATC	9 cut(s)	20, 61, 446, 469, 947, 972, 1085, 1169, 1316
BciT130I	CCWGG	3 cut(s)	147, 485, 1269
BciVI	GTATCC	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	3 cut(s)	54, 1280, 1434
BfaI	CTAG	5 cut(s)	498, 1004, 1008, 1362, 1445
BfrI	CTTAAG	1 cut(s)	1310
BfuAI	ACCTGC	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	147
BglII	AGATCT	1 cut(s)	327
BisI	GCNGC	2 cut(s)	691, 1158
BlsI	GCNGC	2 cut(s)	692, 1159
Bme1390I	CCNGG	4 cut(s)	147, 334, 485, 1269
Bme18I	GGWCC	1 cut(s)	1265
BmgT120I	GGNCC	1 cut(s)	1265
BmiI	GGNNCC	2 cut(s)	458, 1218
BmrFI	CCNGG	4 cut(s)	147, 334, 485, 1269
BmsI	GCATC	2 cut(s)	173, 1021
BpiI	GAAGAC	1 cut(s)	1307
BpmI	CTGGAG	2 cut(s)	978, 1080
BpuMI	CCSGG	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	1122
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	1434
BsaJI	CCNNGG	4 cut(s)	145, 333, 1256, 1436
BsaWI	WCCGGW	2 cut(s)	56, 406
Bsc4I	CCNNNNNNNGG	7 cut(s)	63, 146, 151, 1167, 1259, 1262, 1322
Bse1I	ACTGG	4 cut(s)	68, 769, 1063, 1512
Bse8I	GATNNNNATC	1 cut(s)	1122
BseAI	TCCGGA	1 cut(s)	56
BseBI	CCWGG	3 cut(s)	147, 485, 1269
BseDI	CCNNGG	4 cut(s)	145, 333, 1256, 1436
BseGI	GGATG	4 cut(s)	72, 973, 983, 1077
BseJI	GATNNNNATC	1 cut(s)	1122
BseLI	CCNNNNNNNGG	7 cut(s)	63, 146, 151, 1167, 1259, 1262, 1322
BseMII	CTCAG	2 cut(s)	489, 714
BseNI	ACTGG	4 cut(s)	68, 769, 1063, 1512
BseXI	GCAGC	2 cut(s)	702, 1144
BshFI	GGCC	2 cut(s)	1435, 1511
BshNI	GGYRCC	1 cut(s)	1216
BsiSI	CCGG	3 cut(s)	57, 333, 407
BslFI	GGGAC	2 cut(s)	682, 1214
BslI	CCNNNNNNNGG	7 cut(s)	63, 146, 151, 1167, 1259, 1262, 1322
BsmAI	GTCTC	3 cut(s)	54, 1280, 1434
BsmFI	GGGAC	2 cut(s)	682, 1214
BsnI	GGCC	2 cut(s)	1435, 1511
Bso31I	GGTCTC	1 cut(s)	1434
Bsp13I	TCCGGA	1 cut(s)	56
Bsp1407I	TGTACA	1 cut(s)	796
Bsp143I	GATC	4 cut(s)	327, 487, 1123, 1413
Bsp19I	CCATGG	1 cut(s)	1436
BspANI	GGCC	2 cut(s)	1435, 1511
BspCNI	CTCAG	2 cut(s)	488, 715
BspEI	TCCGGA	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	458, 1218
BspMI	ACCTGC	1 cut(s)	452
BspPI	GGATC	2 cut(s)	495, 1118
BspT107I	GGYRCC	1 cut(s)	1216
BspTI	CTTAAG	1 cut(s)	1310
BspTNI	GGTCTC	1 cut(s)	1434
BsrGI	TGTACA	1 cut(s)	796
BsrI	ACTGG	4 cut(s)	68, 769, 1063, 1512
BssECI	CCNNGG	4 cut(s)	145, 333, 1256, 1436
BssMI	GATC	4 cut(s)	327, 487, 1123, 1413
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	1436
Bst2UI	CCWGG	3 cut(s)	147, 485, 1269
Bst4CI	ACNGT	9 cut(s)	50, 309, 388, 394, 414, 548, 927, 1052, 1240
Bst6I	CTCTTC	1 cut(s)	870
BstACI	GRCGYC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	1310
BstAUI	TGTACA	1 cut(s)	796
BstDEI	CTNAG	2 cut(s)	475, 723
BstDSI	CCRYGG	2 cut(s)	1256, 1436
BstF5I	GGATG	4 cut(s)	72, 973, 983, 1077
BstKTI	GATC	4 cut(s)	330, 490, 1126, 1416
BstMAI	GTCTC	3 cut(s)	54, 1280, 1434
BstMBI	GATC	4 cut(s)	327, 487, 1123, 1413
BstMWI	GCNNNNNNNGC	1 cut(s)	1415
BstNI	CCWGG	3 cut(s)	147, 485, 1269
BstNSI	RCATGY	1 cut(s)	1106
BstSCI	CCNGG	4 cut(s)	145, 332, 483, 1267
BstV1I	GCAGC	2 cut(s)	702, 1144
BstV2I	GAAGAC	1 cut(s)	1307
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	1435, 1511
BtgI	CCRYGG	2 cut(s)	1256, 1436
BtgZI	GCGATG	1 cut(s)	1327
BtsCI	GGATG	4 cut(s)	72, 973, 983, 1077
BtsIMutI	CAGTG	5 cut(s)	228, 314, 390, 553, 1507
BveI	ACCTGC	1 cut(s)	452
CciI	TCATGA	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	1265
CseI	GACGC	2 cut(s)	182, 674
CsiI	ACCWGGT	1 cut(s)	1267
Csp6I	GTAC	3 cut(s)	410, 797, 928
CviQI	GTAC	3 cut(s)	410, 797, 928
DdeI	CTNAG	2 cut(s)	475, 723
DpnI	GATC	4 cut(s)	329, 489, 1125, 1415
DpnII	GATC	4 cut(s)	327, 487, 1123, 1413
EaeI	YGGCCR	2 cut(s)	1433, 1509
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
Eco130I	CCWWGG	1 cut(s)	1436
Eco31I	GGTCTC	1 cut(s)	1434
Eco32I	GATATC	1 cut(s)	1396
Eco47I	GGWCC	1 cut(s)	1265
Eco57I	CTGAAG	3 cut(s)	225, 1247, 1483
EcoO109I	RGGNCCY	1 cut(s)	1265
EcoRI	GAATTC	1 cut(s)	1072
EcoRII	CCWGG	3 cut(s)	145, 483, 1267
EcoRV	GATATC	1 cut(s)	1396
EcoT14I	CCWWGG	1 cut(s)	1436
ErhI	CCWWGG	1 cut(s)	1436
FaqI	GGGAC	2 cut(s)	682, 1214
FauNDI	CATATG	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	691, 1158
FokI	GGATG	4 cut(s)	79, 980, 990, 1064
Fsp4HI	GCNGC	2 cut(s)	691, 1158
FspBI	CTAG	5 cut(s)	498, 1004, 1008, 1362, 1445
GluI	GCNGC	2 cut(s)	691, 1158
GsuI	CTGGAG	2 cut(s)	978, 1080
HaeIII	GGCC	2 cut(s)	1435, 1511
HapII	CCGG	3 cut(s)	57, 333, 407
HgaI	GACGC	2 cut(s)	182, 674
Hin1I	GRCGYC	1 cut(s)	174
HincII	GTYRAC	3 cut(s)	355, 384, 923
HindII	GTYRAC	3 cut(s)	355, 384, 923
HinfI	GANTC	5 cut(s)	53, 80, 233, 272, 284
HpaII	CCGG	3 cut(s)	57, 333, 407
HphI	GGTGA	2 cut(s)	62, 1242
Hpy166II	GTNNAC	4 cut(s)	185, 355, 384, 923
Hpy188I	TCNGA	8 cut(s)	10, 205, 370, 418, 478, 506, 532, 724
Hpy188III	TCNNGA	5 cut(s)	57, 281, 323, 744, 995
Hpy8I	GTNNAC	4 cut(s)	185, 355, 384, 923
HpyAV	CCTTC	3 cut(s)	968, 1222, 1474
HpyCH4III	ACNGT	9 cut(s)	50, 309, 388, 394, 414, 548, 927, 1052, 1240
HpyCH4V	TGCA	7 cut(s)	447, 543, 556, 1019, 1112, 1145, 1277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1415
HpyF3I	CTNAG	2 cut(s)	475, 723
Hsp92I	GRCGYC	1 cut(s)	174
Kpn2I	TCCGGA	1 cut(s)	56
Kzo9I	GATC	4 cut(s)	327, 487, 1123, 1413
Lsp1109I	GCAGC	2 cut(s)	702, 1144
LweI	GCATC	2 cut(s)	173, 1021
MabI	ACCWGGT	1 cut(s)	1267
MaeI	CTAG	5 cut(s)	498, 1004, 1008, 1362, 1445
MaeIII	GTNAC	5 cut(s)	388, 988, 1248, 1440, 1502
MalI	GATC	4 cut(s)	329, 489, 1125, 1415
MboI	GATC	4 cut(s)	327, 487, 1123, 1413
MboII	GAAGA	8 cut(s)	463, 668, 820, 823, 834, 887, 1144, 1312
MfeI	CAATTG	1 cut(s)	1113
MflI	RGATCY	1 cut(s)	327
MlsI	TGGCCA	1 cut(s)	1511
MluNI	TGGCCA	1 cut(s)	1511
MmeI	TCCRAC	2 cut(s)	753, 1151
MnlI	CCTC	5 cut(s)	628, 718, 964, 1256, 1441
Mox20I	TGGCCA	1 cut(s)	1511
MroI	TCCGGA	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	1460
MscI	TGGCCA	1 cut(s)	1511
MseI	TTAA	4 cut(s)	680, 1311, 1338, 1466
MslI	CAYNNNNRTG	2 cut(s)	362, 1255
Msp20I	TGGCCA	1 cut(s)	1511
MspCI	CTTAAG	1 cut(s)	1310
MspI	CCGG	3 cut(s)	57, 333, 407
MspR9I	CCNGG	4 cut(s)	147, 334, 485, 1269
MunI	CAATTG	1 cut(s)	1113
MvaI	CCWGG	3 cut(s)	147, 485, 1269
MwoI	GCNNNNNNNGC	1 cut(s)	1415
NciI	CCSGG	1 cut(s)	334
NcoI	CCATGG	1 cut(s)	1436
NdeI	CATATG	1 cut(s)	179
NdeII	GATC	4 cut(s)	327, 487, 1123, 1413
NlaIV	GGNNCC	2 cut(s)	458, 1218
NmeAIII	GCCGAG	1 cut(s)	1411
NmuCI	GTSAC	5 cut(s)	388, 988, 1248, 1440, 1502
NspI	RCATGY	1 cut(s)	1106
OliI	CACNNNNGTG	1 cut(s)	1255
PagI	TCATGA	1 cut(s)	322
PaqCI	CACCTGC	1 cut(s)	452
PciI	ACATGT	1 cut(s)	1102
PdmI	GAANNNNTTC	1 cut(s)	1460
PfeI	GAWTC	5 cut(s)	53, 80, 233, 272, 284
PflFI	GACNNNGTC	1 cut(s)	1238
PflMI	CCANNNNNTGG	1 cut(s)	1322
PfoI	TCCNGGA	1 cut(s)	483
PkrI	GCNGC	2 cut(s)	692, 1159
PpuMI	RGGWCCY	1 cut(s)	1265
PscI	ACATGT	1 cut(s)	1102
Psp5II	RGGWCCY	1 cut(s)	1265
Psp6I	CCWGG	3 cut(s)	145, 483, 1267
PspGI	CCWGG	3 cut(s)	145, 483, 1267
PspN4I	GGNNCC	2 cut(s)	458, 1218
PspPI	GGNCC	1 cut(s)	1265
PspPPI	RGGWCCY	1 cut(s)	1265
PsuI	RGATCY	1 cut(s)	327
PsyI	GACNNNGTC	1 cut(s)	1238
RsaI	GTAC	3 cut(s)	411, 798, 929
RsaNI	GTAC	3 cut(s)	410, 797, 928
RseI	CAYNNNNRTG	2 cut(s)	362, 1255
SaqAI	TTAA	4 cut(s)	680, 1311, 1338, 1466
SatI	GCNGC	2 cut(s)	691, 1158
Sau3AI	GATC	4 cut(s)	327, 487, 1123, 1413
Sau96I	GGNCC	1 cut(s)	1265
ScrFI	CCNGG	4 cut(s)	147, 334, 485, 1269
SexAI	ACCWGGT	1 cut(s)	1267
SfaNI	GCATC	2 cut(s)	173, 1021
SinI	GGWCC	1 cut(s)	1265
SmiMI	CAYNNNNRTG	2 cut(s)	362, 1255
SmlI	CTYRAG	1 cut(s)	1310
SmoI	CTYRAG	1 cut(s)	1310
SspI	AATATT	3 cut(s)	158, 678, 914
SspMI	CTAG	5 cut(s)	498, 1004, 1008, 1362, 1445
StyD4I	CCNGG	4 cut(s)	145, 332, 483, 1267
StyI	CCWWGG	1 cut(s)	1436
TaaI	ACNGT	9 cut(s)	50, 309, 388, 394, 414, 548, 927, 1052, 1240
TatI	WGTACW	1 cut(s)	796
TfiI	GAWTC	5 cut(s)	53, 80, 233, 272, 284
Tru1I	TTAA	4 cut(s)	680, 1311, 1338, 1466
Tru9I	TTAA	4 cut(s)	680, 1311, 1338, 1466
TscAI	CASTG	5 cut(s)	235, 314, 397, 553, 1507
TseFI	GTSAC	5 cut(s)	388, 988, 1248, 1440, 1502
TseI	GCWGC	2 cut(s)	690, 1157
Tsp45I	GTSAC	5 cut(s)	388, 988, 1248, 1440, 1502
TspDTI	ATGAA	8 cut(s)	264, 435, 597, 633, 729, 765, 1180, 1313
TspGWI	ACGGA	1 cut(s)	820
TspRI	CASTG	5 cut(s)	235, 314, 397, 553, 1507
Tth111I	GACNNNGTC	1 cut(s)	1238
Van91I	CCANNNNNTGG	1 cut(s)	1322
Vha464I	CTTAAG	1 cut(s)	1310
VpaK11BI	GGWCC	1 cut(s)	1265
XapI	RAATTY	3 cut(s)	247, 831, 1072
XceI	RCATGY	1 cut(s)	1106
XmnI	GAANNNNTTC	1 cut(s)	1460
XspI	CTAG	5 cut(s)	498, 1004, 1008, 1362, 1445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.