Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014673

Physical Location & Seq

Genomic Coordinates Forward (+)

51137382 .. 51139864

Gene Structure 2483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0363400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCACGTAGCACTACTTTGCTTAGTAATTGTCCTTGCAAAATTAATGGACGTAGAGAGAGTTCAAACCTTGGCCTTGCGTGGGCTCAACGAGCTCCCAGCGAAGTTCATCCGCCCTACTCATGAGCAACCCGAGAACAGCAAGGCATTGGAGGGACTCACCGTGCCGGTGATATCCCTAGCTAAACGACACGACATTGTCGTGAAGGAAGTGGCTGAGGCAGCCTCTGAGTGGGGCTTCTTTCTCATCACTGACCATGGCATACCGGCTTCTTTGATAGAGCAGTTACAGAAGGTGGGCAAAGAGTTCTTTACGCTGCCACAGGAGAAAAAAGAGGCTTATGCAAATGACCCTGCTAATGGCAAATTTGATGGGTACGGGACCAAGATGACTAAGAACCTTGATGAAAAGGTTGAGTGGATTGACTATTTCTTTCACATCACTGCTCCTCCATCCAAGGTTAACTATGAAATCTGGCCTAAGAATCCTCCATCATACAGGGAAGTAAATGAAGAATACAGCAGGGCAATGCTGAGAGTAACAGACAAGCTACTGGAGTTGCTTTCCGAGAGTCTAGGCCTGGACAAGAAGGTACTGAAATCCCATGTCGGAGGTGACGAAATAGAGCTGGAAATGAAGATAAACATGTACCCGCCATGCCCGCAGCCACAACTGGCTCTTGGAGTTGAGCCTCACACAGACATGTCGGCCCTCACCTTGCTGGTTTCGAACGATGTTCCTGGTCTTCAGCTGTGGAAAGATGGCAACTGGGTTTCAGTAAATTACCTAACCAAGGCAGGCGCAATCTTCGTTCACATTGGTGATCAGATGGAGGTGTTGAGCAATGGCAAGTACAAGAGTGTTCTTCACCGGAGCTTGGTGAACAAGGAACGGTTGCGCATGTCGTGGGCTGTGTTCGTTGCGCCGCCGCATGAGGCGGTCATTGGGCCTCTGCCGGAGCTTTTGGATGAACAAAACCCTGCCAAATACTCTACCAAAACATATGCTGAATACCGGCACCGCAAATTCAACAAGATCCCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0032259 GO:0034641 GO:0036260 GO:0036261 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071164 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Methyltransf_15 WW

Protein Analysis

348

Amino Acids

39.41

Weight (kDa)

6.28

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	55 - 162	1.7e-25	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	212 - 309	4.9e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34310 FvH4_2g34310
malus_domestica	MD15G1081500.v1.1
prunus_persica	Prupe.1G434300_v2.0.a1 Prupe.1G434300_v2.0.a1 Prupe.1G434300_v2.0.a1
pyrus_communis	pycom15g07620 pycom15g07630
rosa_chinensis	RchiOBHm_Chr6g0308051
rosa_laevigata	RLG00000010672
rosa_multiflora	Rmu_sc0002624.1_g000003
rosa_roxburghii	Rroxscaffold_7G00160630
rosa_rugosa	Rorug06G0363400
rosa_samantha	Rh6AG472300 Rh6BG483400 Rh6DG474700
rosa_wichuraiana	Rw6G041220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	899
AccB1I	GGYRCC	1 cut(s)	1017
AciI	CCGC	7 cut(s)	112, 653, 662, 926, 929, 938, 1021
AclWI	GGATC	1 cut(s)	1030
AcsI	RAATTY	2 cut(s)	365, 1025
AcuI	CTGAAG	1 cut(s)	731
AfaI	GTAC	4 cut(s)	377, 594, 650, 854
AfiI	CCNNNNNNNGG	5 cut(s)	81, 231, 359, 793, 877
AflIII	ACRYGT	2 cut(s)	645, 702
AgsI	TTSAA	2 cut(s)	65, 1030
AjnI	CCWGG	2 cut(s)	579, 739
AleI	CACNNNNGTG	1 cut(s)	819
AluBI	AGCT	7 cut(s)	94, 182, 550, 628, 751, 876, 961
AluI	AGCT	7 cut(s)	94, 182, 550, 628, 751, 876, 961
Alw21I	GWGCWC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	1030
AlwNI	CAGNNNCTG	1 cut(s)	227
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	5 cut(s)	72, 476, 577, 708, 947
ApeKI	GCWGC	3 cut(s)	221, 316, 664
ApoI	RAATTY	2 cut(s)	365, 1025
AseI	ATTAAT	1 cut(s)	44
AspLEI	GCGC	3 cut(s)	803, 900, 925
AspS9I	GGNCC	3 cut(s)	381, 709, 947
AsuHPI	GGTGA	7 cut(s)	151, 181, 626, 706, 833, 860, 892
AsuII	TTCGAA	1 cut(s)	728
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	1017
BanII	GRGCYC	2 cut(s)	87, 96
BbsI	GAAGAC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	233, 303, 676
BccI	CCATC	5 cut(s)	365, 460, 499, 755, 823
BciT130I	CCWGG	2 cut(s)	581, 741
BclI	TGATCA	1 cut(s)	823
BfaI	CTAG	2 cut(s)	179, 575
BisI	GCNGC	5 cut(s)	222, 317, 665, 926, 929
BlsI	GCNGC	5 cut(s)	223, 318, 666, 927, 930
Bme1390I	CCNGG	2 cut(s)	581, 741
Bme18I	GGWCC	1 cut(s)	381
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	3 cut(s)	381, 709, 947
BmiI	GGNNCC	2 cut(s)	382, 1019
BmrFI	CCNGG	2 cut(s)	581, 741
BmrI	ACTGGG	1 cut(s)	778
BmuI	ACTGGG	1 cut(s)	778
BpiI	GAAGAC	1 cut(s)	737
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	1 cut(s)	575
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	728
BsaAI	YACGTR	1 cut(s)	7
BsaJI	CCNNGG	4 cut(s)	69, 256, 456, 792
BsaWI	WCCGGW	1 cut(s)	870
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	5 cut(s)	81, 231, 359, 793, 877
Bse118I	RCCGGY	3 cut(s)	166, 265, 1014
Bse1I	ACTGG	3 cut(s)	558, 678, 773
Bse3DI	GCAATG	2 cut(s)	534, 850
BseBI	CCWGG	2 cut(s)	581, 741
BseDI	CCNNGG	4 cut(s)	69, 256, 456, 792
BseGI	GGATG	3 cut(s)	108, 452, 973
BseLI	CCNNNNNNNGG	5 cut(s)	81, 231, 359, 793, 877
BseMI	GCAATG	2 cut(s)	534, 850
BseMII	CTCAG	3 cut(s)	207, 219, 524
BseNI	ACTGG	3 cut(s)	558, 678, 773
BseRI	GAGGAG	1 cut(s)	438
BseXI	GCAGC	3 cut(s)	233, 303, 676
BseYI	CCCAGC	1 cut(s)	97
BshFI	GGCC	5 cut(s)	74, 478, 579, 710, 949
BshNI	GGYRCC	1 cut(s)	1017
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	5 cut(s)	167, 266, 871, 956, 1015
BslFI	GGGAC	2 cut(s)	168, 394
BslI	CCNNNNNNNGG	5 cut(s)	81, 231, 359, 793, 877
BsmFI	GGGAC	2 cut(s)	168, 394
BsnI	GGCC	5 cut(s)	74, 478, 579, 710, 949
BsoBI	CYCGRG	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	728
Bsp1286I	GDGCHC	2 cut(s)	87, 96
Bsp143I	GATC	2 cut(s)	823, 1035
Bsp19I	CCATGG	1 cut(s)	256
BspACI	CCGC	7 cut(s)	112, 653, 662, 926, 929, 938, 1021
BspANI	GGCC	5 cut(s)	74, 478, 579, 710, 949
BspCNI	CTCAG	3 cut(s)	208, 220, 525
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	382, 1019
BspPI	GGATC	1 cut(s)	1030
BspT104I	TTCGAA	1 cut(s)	728
BspT107I	GGYRCC	1 cut(s)	1017
BsrDI	GCAATG	2 cut(s)	534, 850
BsrFI	RCCGGY	3 cut(s)	166, 265, 1014
BsrI	ACTGG	3 cut(s)	558, 678, 773
BssAI	RCCGGY	3 cut(s)	166, 265, 1014
BssECI	CCNNGG	4 cut(s)	69, 256, 456, 792
BssMI	GATC	2 cut(s)	823, 1035
BssT1I	CCWWGG	4 cut(s)	69, 256, 456, 792
Bst2UI	CCWGG	2 cut(s)	581, 741
Bst4CI	ACNGT	3 cut(s)	163, 894, 1044
BstBAI	YACGTR	1 cut(s)	7
BstBI	TTCGAA	1 cut(s)	728
BstC8I	GCNNGC	2 cut(s)	662, 799
BstDEI	CTNAG	6 cut(s)	22, 216, 228, 393, 480, 533
BstDSI	CCRYGG	1 cut(s)	256
BstENI	CCTNNNNNAGG	1 cut(s)	791
BstF5I	GGATG	3 cut(s)	108, 452, 973
BstHHI	GCGC	3 cut(s)	803, 900, 925
BstKTI	GATC	2 cut(s)	826, 1038
BstMBI	GATC	2 cut(s)	823, 1035
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 221, 661
BstNI	CCWGG	2 cut(s)	581, 741
BstNSI	RCATGY	3 cut(s)	649, 706, 904
BstSCI	CCNGG	2 cut(s)	579, 739
BstV1I	GCAGC	3 cut(s)	233, 303, 676
BstV2I	GAAGAC	1 cut(s)	737
BstX2I	RGATCY	1 cut(s)	1035
BstYI	RGATCY	1 cut(s)	1035
BsuRI	GGCC	5 cut(s)	74, 478, 579, 710, 949
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	3 cut(s)	108, 452, 973
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	2 cut(s)	249, 441
Cac8I	GCNNGC	2 cut(s)	662, 799
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	3 cut(s)	803, 900, 925
Cfr10I	RCCGGY	3 cut(s)	166, 265, 1014
Cfr13I	GGNCC	3 cut(s)	381, 709, 947
Csp6I	GTAC	4 cut(s)	376, 593, 649, 853
CviAII	CATG	8 cut(s)	122, 257, 605, 646, 657, 703, 901, 932
CviQI	GTAC	4 cut(s)	376, 593, 649, 853
DdeI	CTNAG	6 cut(s)	22, 216, 228, 393, 480, 533
DpnI	GATC	2 cut(s)	825, 1037
DpnII	GATC	2 cut(s)	823, 1035
EciI	GGCGGA	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	4 cut(s)	69, 256, 456, 792
Eco147I	AGGCCT	1 cut(s)	579
Eco24I	GRGCYC	2 cut(s)	87, 96
Eco32I	GATATC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	731
Eco88I	CYCGRG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	791
EcoRII	CCWGG	2 cut(s)	579, 739
EcoRV	GATATC	1 cut(s)	174
EcoT14I	CCWWGG	4 cut(s)	69, 256, 456, 792
EcoT38I	GRGCYC	2 cut(s)	87, 96
ErhI	CCWWGG	4 cut(s)	69, 256, 456, 792
FaeI	CATG	8 cut(s)	125, 260, 608, 649, 660, 706, 904, 935
FaqI	GGGAC	2 cut(s)	168, 394
FatI	CATG	8 cut(s)	121, 256, 604, 645, 656, 702, 900, 931
FauI	CCCGC	2 cut(s)	660, 669
FauNDI	CATATG	1 cut(s)	1003
FbaI	TGATCA	1 cut(s)	823
Fnu4HI	GCNGC	5 cut(s)	222, 317, 665, 926, 929
FokI	GGATG	3 cut(s)	95, 439, 980
FriOI	GRGCYC	2 cut(s)	87, 96
Fsp4HI	GCNGC	5 cut(s)	222, 317, 665, 926, 929
FspBI	CTAG	2 cut(s)	179, 575
FspI	TGCGCA	1 cut(s)	899
GlaI	GCGC	3 cut(s)	802, 899, 924
GluI	GCNGC	5 cut(s)	222, 317, 665, 926, 929
GsaI	CCCAGC	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	5 cut(s)	74, 478, 579, 710, 949
HapII	CCGG	5 cut(s)	167, 266, 871, 956, 1015
HhaI	GCGC	3 cut(s)	803, 900, 925
Hin1II	CATG	8 cut(s)	125, 260, 608, 649, 660, 706, 904, 935
Hin6I	GCGC	3 cut(s)	801, 898, 923
HinP1I	GCGC	3 cut(s)	801, 898, 923
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	3 cut(s)	156, 484, 571
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	5 cut(s)	167, 266, 871, 956, 1015
HphI	GGTGA	7 cut(s)	151, 181, 626, 706, 833, 860, 892
Hpy166II	GTNNAC	3 cut(s)	463, 814, 883
Hpy188I	TCNGA	4 cut(s)	229, 568, 611, 828
Hpy188III	TCNNGA	2 cut(s)	122, 202
Hpy8I	GTNNAC	3 cut(s)	463, 814, 883
HpyAV	CCTTC	3 cut(s)	199, 286, 583
HpyCH4III	ACNGT	3 cut(s)	163, 894, 1044
HpyCH4IV	ACGT	2 cut(s)	6, 51
HpyCH4V	TGCA	3 cut(s)	4, 38, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 221, 661
HpyF3I	CTNAG	6 cut(s)	22, 216, 228, 393, 480, 533
HpySE526I	ACGT	2 cut(s)	6, 51
Hsp92II	CATG	8 cut(s)	125, 260, 608, 649, 660, 706, 904, 935
HspAI	GCGC	3 cut(s)	801, 898, 923
Ksp22I	TGATCA	1 cut(s)	823
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	823, 1035
LmnI	GCTCC	4 cut(s)	99, 451, 873, 958
Lsp1109I	GCAGC	3 cut(s)	233, 303, 676
MaeI	CTAG	2 cut(s)	179, 575
MaeII	ACGT	2 cut(s)	6, 51
MaeIII	GTNAC	3 cut(s)	285, 538, 614
MalI	GATC	2 cut(s)	825, 1037
MboI	GATC	2 cut(s)	823, 1035
MboII	GAAGA	5 cut(s)	524, 649, 737, 799, 857
MflI	RGATCY	1 cut(s)	1035
MhlI	GDGCHC	2 cut(s)	87, 96
MluCI	AATT	5 cut(s)	27, 41, 365, 781, 1025
MlyI	GAGTC	2 cut(s)	150, 580
MmeI	TCCRAC	1 cut(s)	589
MseI	TTAA	2 cut(s)	44, 462
MslI	CAYNNNNRTG	3 cut(s)	200, 701, 819
MspA1I	CMGCKG	1 cut(s)	751
MspI	CCGG	5 cut(s)	167, 266, 871, 956, 1015
MspR9I	CCNGG	2 cut(s)	581, 741
MvaI	CCWGG	2 cut(s)	581, 741
MwoI	GCNNNNNNNGC	3 cut(s)	91, 221, 661
NcoI	CCATGG	1 cut(s)	256
NdeI	CATATG	1 cut(s)	1003
NdeII	GATC	2 cut(s)	823, 1035
NlaIII	CATG	8 cut(s)	125, 260, 608, 649, 660, 706, 904, 935
NlaIV	GGNNCC	2 cut(s)	382, 1019
NmuCI	GTSAC	1 cut(s)	614
NsbI	TGCGCA	1 cut(s)	899
NspI	RCATGY	3 cut(s)	649, 706, 904
NspV	TTCGAA	1 cut(s)	728
OliI	CACNNNNGTG	1 cut(s)	819
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	579
PciI	ACATGT	2 cut(s)	645, 702
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 615
PfeI	GAWTC	1 cut(s)	484
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	223, 318, 666, 927, 930
PleI	GAGTC	2 cut(s)	150, 579
PpsI	GAGTC	2 cut(s)	150, 579
Ppu21I	YACGTR	1 cut(s)	7
PscI	ACATGT	2 cut(s)	645, 702
PshBI	ATTAAT	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	579, 739
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	2 cut(s)	579, 739
PspN4I	GGNNCC	2 cut(s)	382, 1019
PspPI	GGNCC	3 cut(s)	381, 709, 947
PsrI	GAACNNNNNNTAC	2 cut(s)	45, 77
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	1035
PsyI	GACNNNGTC	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	751
RsaI	GTAC	4 cut(s)	377, 594, 650, 854
RsaNI	GTAC	4 cut(s)	376, 593, 649, 853
RseI	CAYNNNNRTG	3 cut(s)	200, 701, 819
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	44, 462
SatI	GCNGC	5 cut(s)	222, 317, 665, 926, 929
Sau3AI	GATC	2 cut(s)	823, 1035
Sau96I	GGNCC	3 cut(s)	381, 709, 947
SchI	GAGTC	2 cut(s)	150, 580
ScrFI	CCNGG	2 cut(s)	581, 741
SduI	GDGCHC	2 cut(s)	87, 96
SfuI	TTCGAA	1 cut(s)	728
SinI	GGWCC	1 cut(s)	381
SmiMI	CAYNNNNRTG	3 cut(s)	200, 701, 819
Sse9I	AATT	5 cut(s)	27, 41, 365, 781, 1025
SseBI	AGGCCT	1 cut(s)	579
SsiI	CCGC	7 cut(s)	112, 653, 662, 926, 929, 938, 1021
SspMI	CTAG	2 cut(s)	179, 575
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	579
StyD4I	CCNGG	2 cut(s)	579, 739
StyI	CCWWGG	4 cut(s)	69, 256, 456, 792
TaaI	ACNGT	3 cut(s)	163, 894, 1044
TaiI	ACGT	2 cut(s)	9, 54
TaqI	TCGA	1 cut(s)	728
TasI	AATT	5 cut(s)	27, 41, 365, 781, 1025
TatI	WGTACW	1 cut(s)	852
TauI	GCSGC	2 cut(s)	928, 931
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	2 cut(s)	44, 462
Tru9I	TTAA	2 cut(s)	44, 462
TscAI	CASTG	2 cut(s)	256, 448
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	3 cut(s)	221, 316, 664
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	6 cut(s)	97, 420, 483, 525, 650, 984
TspRI	CASTG	2 cut(s)	256, 448
Tth111I	GACNNNGTC	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	381
VspI	ATTAAT	1 cut(s)	44
XagI	CCTNNNNNAGG	1 cut(s)	791
XapI	RAATTY	2 cut(s)	365, 1025
XceI	RCATGY	3 cut(s)	649, 706, 904
XspI	CTAG	2 cut(s)	179, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.