Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014673

Physical Location & Seq

Genomic Coordinates Reverse (-)

4714979 .. 4716359

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g07630.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTCTGATCCCACTTTGTCAACTGTCACTGTAAGCAGATGTCCGGTACAGTCGGATGAAATCAATGAGAACAATAACACCTGCAACGATGGGAACCTATCACGCTTCTTATCAGATGTCCAGGATCATATCGCTAGTATCAGAAACAAAATCAAGCAGTTTTCTTTGCATGGTGCCCACAGTATCAGAAACAAAATCAAGCAGTTGATTTCTTATGATGTCTGCAACAGTGGTTTGCAATTAATTCTTGCTGAACAGATTGATGAACAAAATACTATTGAACTCAATAATGAGCCTAATGAACCTAATTTTTGTGAGGAAACTCTCAAAGATTGCGAAGCTTTTGACACGTTTCAAATACTAAATACAAGCAGCTTGTCCTATACATACACTGACGAAGTATCTGAGGATAGTAATATGCATTCAGGAAATGAAGTTTTGGCAACAAACCAGTTGGAAATGCAGCTTGACCCTGCTGTACAAAAACGGAAGAAGAAAGTGAGAAGAAAGAAAATTCAGAGAAAGTTATCTAATGAAAACGGAGAGTTGTTCATAGAGTTTTCTGCTGATATGGAAAAATATTGGTATCAACGGTACCTATTATTCTCCAGATACGATGATGGTATAAAAATGGATGAGGAAGGATGGTTCTCTGTCACTCCAGAGCTTCTAGCTAGGCATCATGCAGAACGATGTGGTAGTGATGTCATCATTGATTGTTTTACTGGAGTTGGTGGGAATTCCATCCAATTTGCACAGATAAGCAAACATGTAATTGCAATTGACATTGATCGATCCTTATACGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0032259 GO:0034641 GO:0036260 GO:0036261 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071164 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Methyltransf_15 WW

Protein Analysis

271

Amino Acids

30.95

Weight (kDa)

4.86

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34310 FvH4_2g34310
malus_domestica	MD15G1081500.v1.1
prunus_persica	Prupe.1G434300_v2.0.a1 Prupe.1G434300_v2.0.a1 Prupe.1G434300_v2.0.a1
pyrus_communis	pycom15g07620 pycom15g07630
rosa_chinensis	RchiOBHm_Chr6g0308051
rosa_laevigata	RLG00000010672
rosa_multiflora	Rmu_sc0002624.1_g000003
rosa_roxburghii	Rroxscaffold_7G00160630
rosa_rugosa	Rorug06G0363400
rosa_samantha	Rh6AG472300 Rh6BG483400 Rh6DG474700
rosa_wichuraiana	Rw6G041220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	89
Acc65I	GGTACC	1 cut(s)	594
AccB1I	GGYRCC	2 cut(s)	173, 594
AclWI	GGATC	3 cut(s)	2, 132, 789
AcsI	RAATTY	2 cut(s)	513, 739
AfaI	GTAC	3 cut(s)	48, 480, 596
AflIII	ACRYGT	2 cut(s)	348, 769
AgsI	TTSAA	2 cut(s)	281, 356
AjnI	CCWGG	1 cut(s)	120
AloI	GAACNNNNNNTCC	2 cut(s)	632, 664
AluBI	AGCT	5 cut(s)	341, 375, 466, 667, 674
AluI	AGCT	5 cut(s)	341, 375, 466, 667, 674
AlwI	GGATC	3 cut(s)	2, 132, 789
ApeKI	GCWGC	2 cut(s)	372, 463
ApoI	RAATTY	2 cut(s)	513, 739
AseI	ATTAAT	1 cut(s)	242
Asp718I	GGTACC	1 cut(s)	594
BaeGI	GKGCMC	1 cut(s)	178
BanI	GGYRCC	2 cut(s)	173, 594
BbvI	GCAGC	2 cut(s)	384, 475
BccI	CCATC	4 cut(s)	83, 614, 639, 752
BciT130I	CCWGG	1 cut(s)	122
BfaI	CTAG	3 cut(s)	135, 671, 675
BfuAI	ACCTGC	1 cut(s)	89
BisI	GCNGC	2 cut(s)	373, 464
BlsI	GCNGC	2 cut(s)	374, 465
Bme1390I	CCNGG	1 cut(s)	122
BmiI	GGNNCC	3 cut(s)	95, 175, 596
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	688
BpmI	CTGGAG	3 cut(s)	592, 645, 747
Bsa29I	ATCGAT	1 cut(s)	793
BsaWI	WCCGGW	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	451, 730
BseBI	CCWGG	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	793
BseGI	GGATG	4 cut(s)	61, 640, 650, 744
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	2 cut(s)	451, 730
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	384, 475
BshNI	GGYRCC	2 cut(s)	173, 594
BshVI	ATCGAT	1 cut(s)	793
BsiSI	CCGG	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	478
Bsp143I	GATC	4 cut(s)	7, 124, 790, 794
BspCNI	CTCAG	1 cut(s)	397
BspDI	ATCGAT	1 cut(s)	793
BspLI	GGNNCC	3 cut(s)	95, 175, 596
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	3 cut(s)	2, 132, 789
BspT107I	GGYRCC	2 cut(s)	173, 594
BsrGI	TGTACA	1 cut(s)	478
BsrI	ACTGG	2 cut(s)	451, 730
BssMI	GATC	4 cut(s)	7, 124, 790, 794
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	6 cut(s)	25, 31, 51, 182, 230, 594
BstAUI	TGTACA	1 cut(s)	478
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	4 cut(s)	61, 640, 650, 744
BstKTI	GATC	4 cut(s)	10, 127, 793, 797
BstMBI	GATC	4 cut(s)	7, 124, 790, 794
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	384, 475
Bsu15I	ATCGAT	1 cut(s)	793
BsuTUI	ATCGAT	1 cut(s)	793
BtsCI	GGATG	4 cut(s)	61, 640, 650, 744
BtsIMutI	CAGTG	3 cut(s)	27, 235, 390
BveI	ACCTGC	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	793
Csp6I	GTAC	3 cut(s)	47, 479, 595
CviAII	CATG	3 cut(s)	170, 683, 770
CviJI	RGCY	6 cut(s)	295, 341, 375, 466, 667, 674
CviKI_1	RGCY	6 cut(s)	295, 341, 375, 466, 667, 674
CviQI	GTAC	3 cut(s)	47, 479, 595
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	4 cut(s)	9, 126, 792, 796
DpnII	GATC	4 cut(s)	7, 124, 790, 794
EcoRI	GAATTC	1 cut(s)	739
EcoRII	CCWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	423
FaeI	CATG	3 cut(s)	173, 686, 773
FatI	CATG	3 cut(s)	169, 682, 769
Fnu4HI	GCNGC	2 cut(s)	373, 464
FokI	GGATG	4 cut(s)	68, 647, 657, 731
Fsp4HI	GCNGC	2 cut(s)	373, 464
FspBI	CTAG	3 cut(s)	135, 671, 675
GluI	GCNGC	2 cut(s)	373, 464
GsuI	CTGGAG	3 cut(s)	592, 645, 747
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	3 cut(s)	173, 686, 773
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HindIII	AAGCTT	1 cut(s)	339
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	7 cut(s)	7, 55, 115, 143, 188, 406, 519
Hpy188III	TCNNGA	3 cut(s)	426, 609, 662
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	635
HpyCH4III	ACNGT	6 cut(s)	25, 31, 51, 182, 230, 594
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	9 cut(s)	84, 169, 225, 238, 421, 463, 686, 755, 779
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	3 cut(s)	173, 686, 773
KpnI	GGTACC	1 cut(s)	598
Kzo9I	GATC	4 cut(s)	7, 124, 790, 794
Lsp1109I	GCAGC	2 cut(s)	384, 475
LweI	GCATC	1 cut(s)	688
MaeI	CTAG	3 cut(s)	135, 671, 675
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	25, 655
MalI	GATC	4 cut(s)	9, 126, 792, 796
MboI	GATC	4 cut(s)	7, 124, 790, 794
MboII	GAAGA	3 cut(s)	502, 505, 516
MfeI	CAATTG	1 cut(s)	780
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	8 cut(s)	239, 243, 307, 513, 739, 749, 774, 780
MmeI	TCCRAC	2 cut(s)	33, 435
MnlI	CCTC	3 cut(s)	310, 400, 631
Mph1103I	ATGCAT	1 cut(s)	423
MseI	TTAA	1 cut(s)	242
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	780
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	122
NdeII	GATC	4 cut(s)	7, 124, 790, 794
NlaIII	CATG	3 cut(s)	173, 686, 773
NlaIV	GGNNCC	3 cut(s)	95, 175, 596
NmuCI	GTSAC	2 cut(s)	25, 655
NsiI	ATGCAT	1 cut(s)	423
NspI	RCATGY	1 cut(s)	773
PaqCI	CACCTGC	1 cut(s)	89
PciI	ACATGT	1 cut(s)	769
PctI	GAATGC	1 cut(s)	421
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	374, 465
PscI	ACATGT	1 cut(s)	769
PshBI	ATTAAT	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	3 cut(s)	95, 175, 596
RsaI	GTAC	3 cut(s)	48, 480, 596
RsaNI	GTAC	3 cut(s)	47, 479, 595
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	2 cut(s)	373, 464
Sau3AI	GATC	4 cut(s)	7, 124, 790, 794
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	1 cut(s)	688
Sse9I	AATT	8 cut(s)	239, 243, 307, 513, 739, 749, 774, 780
SspI	AATATT	1 cut(s)	581
SspMI	CTAG	3 cut(s)	135, 671, 675
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	6 cut(s)	25, 31, 51, 182, 230, 594
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	1 cut(s)	793
TasI	AATT	8 cut(s)	239, 243, 307, 513, 739, 749, 774, 780
TatI	WGTACW	1 cut(s)	478
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	3 cut(s)	34, 235, 397
TseFI	GTSAC	2 cut(s)	25, 655
TseI	GCWGC	2 cut(s)	372, 463
Tsp45I	GTSAC	2 cut(s)	25, 655
TspDTI	ATGAA	6 cut(s)	72, 279, 315, 447, 541, 549
TspGWI	ACGGA	2 cut(s)	502, 555
TspRI	CASTG	3 cut(s)	34, 235, 397
VspI	ATTAAT	1 cut(s)	242
XapI	RAATTY	2 cut(s)	513, 739
XceI	RCATGY	1 cut(s)	773
XspI	CTAG	3 cut(s)	135, 671, 675
Zsp2I	ATGCAT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.