MD15G1151400.v1.1

U1-like zinc finger

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
11142947 .. 11145996
3050 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1151400.v1.1.491

Sequence Viewer

Length: 1410 bp
ATGGAGTTCAAATTCCGATCGGTGGACGAGAGGCCGCCGCCGCCTTTCCCCGCCGGCAGCTACTTCTCCTCCGACCAACCCTCATTCCGAGGCCAGACAGCTATATTCCGGAATCCGGATATGAGATTGAACCTGGACCCGCTCCACAACCCGAGGTCCGTCCGCGACGAGATGATCGAGCGCCAGCTGGAGAAGGAGAGGATCAGGGAGGAGATTATTGCGGAGGAGATTGCGCGAAGGCGGGCTCTCGAAGCGGAGGTGAGGAGAGAGCTCATGCTGGAGCGGGAAATCGCTATGCGAAGACCCTCTGGCGAAGGTCTCGGTTTTGATCAGGTCCGTTTCGGGGCGGTGCGATTCGACCAGAGAGTCCACCACCCCTTCGATGATGACCGGTTCGGATTGTTTGCCTCTCTTGCGCCCGCCGCATTCGATAGGGTCACGTGGCGGCGGCAACCGGAACCTCTGACCAATGGCTTCAAGGCGCTTCCGGCTCCTCCTCCTAACAATAAGGACAAGTTGATCTTACTGGCGAAACCTAACCCAAATCTCTCTGGAGTCAGGCGGAAAATACCACCAATGGTGGGTGCTAGTGATCTGCCTCCATTTGGGTTGAAAAGGAAACCCAAAGAGGAATGGAGTTGCGCCCTGTGCCATGTTAGTGCAACAAGTGAGAAGGGCTTGATTCATCACATTAATGGTAAGAAGCACCAAGCCAAGGAAGCAAGACTGAGAGCTCAGAAACCAGGCACGAGCTCCAGCAATTCAAAATTGTCAAAGAAAGCTGCAAAGTTTTCTGAGCCCAAGGAGGTCAATGGTATCATAAGCACAGAATTAAGGGCCAAACAAGTAAGGAAATCGTTTGACCACAATGAAACCAGTGATGTTTCCAACCAGAAAATGCACAAACAGGGCACTTCAAAAAGGGAGACACCAATGTCGAAAGACAAGTGTGGAGAGGTTCTGAAGAACAAATACAAGGTTAAAATAGTGGACGGAGTTGAGAGAAAAGAAGATGTAAAGAAACAGAAGTTTAAGTTTTGGTGTGAAGGGTGTAAAATTGGTGCCTTCACTCCAAAGGTGTGGTCGTCTCATATAAAGGGGAAGAAGCACGTTGCCAGGAGTCAGGAGCTTACACAAAATAATGCGCCGATTGCAAGTTTCATGGCATCAACTGAGGCCTGTAAGGAGGAAGAAGATTCTGATGCGGCCAAAGAAACTCATGAGAAGATTCCAACAGCAACCCCCATAGCATCAGAAGAGGCTAGTAAGGAGGCAGAAGATGCTGATGCGGACAAAGAAGCGCACGAGAAGTTCAATGGCCTCATGATGAAGCTAATAAGAATGCATAATGTTGCTCCGGCAAAAGAAGCAAATGACAGTGCAGAAGTTGTTGCAGATACAGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

470

Amino Acids

53.01

Weight (kDa)

9.36

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 365, 934
AccB1I GGYRCC 1 cut(s) 1061
AccBSI CCGCTC 2 cut(s) 142, 283
AccII CGCG 2 cut(s) 165, 235
AccIII TCCGGA 2 cut(s) 108, 115
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 1206
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 983
AcvI CACGTG 1 cut(s) 441
AfiI CCNNNNNNNGG 6 cut(s) 22, 115, 343, 581, 605, 715
AgeI ACCGGT 1 cut(s) 390
AgsI TTSAA 7 cut(s) 10, 130, 478, 613, 765, 918, 1315
AjnI CCWGG 3 cut(s) 132, 742, 1115
AluBI AGCT 9 cut(s) 60, 101, 187, 271, 734, 753, 782, 1129, 1333
AluI AGCT 9 cut(s) 60, 101, 187, 271, 734, 753, 782, 1129, 1333
Alw21I GWGCWC 3 cut(s) 273, 736, 755
Alw26I GTCTC 3 cut(s) 323, 920, 1092
AlwI GGATC 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 151
Aor13HI TCCGGA 2 cut(s) 108, 115
AoxI GGCC 6 cut(s) 32, 91, 837, 1176, 1206, 1318
ApeKI GCWGC 2 cut(s) 57, 782
ApoI RAATTY 1 cut(s) 11
ArsI GACNNNNNNTTYG 2 cut(s) 1067, 1099
AseI ATTAAT 1 cut(s) 693
AsiGI ACCGGT 1 cut(s) 390
AspLEI GCGC 7 cut(s) 183, 235, 418, 484, 644, 1147, 1303
AspS9I GGNCC 4 cut(s) 136, 156, 334, 837
AsuHPI GGTGA 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 3 cut(s) 136, 156, 334
BaeGI GKGCMC 1 cut(s) 914
BanI GGYRCC 1 cut(s) 1061
BanII GRGCYC 5 cut(s) 247, 273, 736, 755, 801
BarI GAAGNNNNNNTAC 2 cut(s) 956, 988
BauI CACGAG 2 cut(s) 748, 1304
BbrPI CACGTG 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 307
Bbv12I GWGCWC 3 cut(s) 273, 736, 755
BbvI GCAGC 2 cut(s) 69, 769
BciT130I CCWGG 3 cut(s) 134, 744, 1117
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 3 cut(s) 323, 920, 1092
BfaI CTAG 2 cut(s) 588, 1263
BfoI RGCGCY 2 cut(s) 184, 485
BisI GCNGC 9 cut(s) 35, 38, 41, 58, 423, 446, 449, 783, 1206
BlsI GCNGC 9 cut(s) 36, 39, 42, 59, 424, 447, 450, 784, 1207
Bme1390I CCNGG 3 cut(s) 134, 744, 1117
Bme18I GGWCC 3 cut(s) 136, 156, 334
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 4 cut(s) 136, 156, 334, 837
BmiI GGNNCC 4 cut(s) 138, 459, 492, 1063
BmrFI CCNGG 3 cut(s) 134, 744, 1117
BmsI GCATC 5 cut(s) 1175, 1192, 1259, 1270, 1276
BpiI GAAGAC 1 cut(s) 307
BpmI CTGGAG 4 cut(s) 209, 299, 573, 739
BsaAI YACGTR 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 4 cut(s) 88, 152, 714, 801
BsaWI WCCGGW 4 cut(s) 108, 115, 390, 454
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 115, 343, 581, 605, 715
Bse118I RCCGGY 2 cut(s) 53, 390
Bse1I ACTGG 2 cut(s) 531, 876
BseAI TCCGGA 2 cut(s) 108, 115
BseBI CCWGG 3 cut(s) 134, 744, 1117
BseDI CCNNGG 4 cut(s) 88, 152, 714, 801
BseLI CCNNNNNNNGG 6 cut(s) 22, 115, 343, 581, 605, 715
BseMII CTCAG 4 cut(s) 719, 749, 786, 1164
BseNI ACTGG 2 cut(s) 531, 876
BseRI GAGGAG 6 cut(s) 58, 224, 239, 277, 483, 486
BseSI GKGCMC 1 cut(s) 914
BseXI GCAGC 2 cut(s) 69, 769
BsgI GTGCAG 1 cut(s) 1401
Bsh1236I CGCG 2 cut(s) 165, 235
Bsh1285I CGRYCG 1 cut(s) 20
BshFI GGCC 6 cut(s) 34, 93, 839, 1178, 1208, 1320
BshNI GGYRCC 1 cut(s) 1061
BshTI ACCGGT 1 cut(s) 390
BsiEI CGRYCG 1 cut(s) 20
BsiHKAI GWGCWC 3 cut(s) 273, 736, 755
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 7 cut(s) 54, 109, 116, 391, 455, 488, 1358
BslI CCNNNNNNNGG 6 cut(s) 22, 115, 343, 581, 605, 715
BsmAI GTCTC 3 cut(s) 323, 920, 1092
BsmBI CGTCTC 1 cut(s) 1092
BsmI GAATGC 2 cut(s) 425, 1347
BsnI GGCC 6 cut(s) 34, 93, 839, 1178, 1208, 1320
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 6 cut(s) 247, 273, 736, 755, 801, 914
Bsp13I TCCGGA 2 cut(s) 108, 115
Bsp143I GATC 6 cut(s) 17, 174, 201, 328, 519, 592
BspANI GGCC 6 cut(s) 34, 93, 839, 1178, 1208, 1320
BspCNI CTCAG 4 cut(s) 720, 748, 787, 1165
BspEI TCCGGA 2 cut(s) 108, 115
BspFNI CGCG 2 cut(s) 165, 235
BspHI TCATGA 2 cut(s) 1219, 1323
BspLI GGNNCC 4 cut(s) 138, 459, 492, 1063
BspPI GGATC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 1061
BspTNI GGTCTC 1 cut(s) 323
BsrBI CCGCTC 2 cut(s) 142, 283
BsrFI RCCGGY 2 cut(s) 53, 390
BsrI ACTGG 2 cut(s) 531, 876
BssAI RCCGGY 2 cut(s) 53, 390
BssECI CCNNGG 4 cut(s) 88, 152, 714, 801
BssMI GATC 6 cut(s) 17, 174, 201, 328, 519, 592
BssSI CACGAG 2 cut(s) 748, 1304
BssT1I CCWWGG 2 cut(s) 714, 801
Bst2BI CACGAG 2 cut(s) 748, 1304
Bst2UI CCWGG 3 cut(s) 134, 744, 1117
Bst4CI ACNGT 1 cut(s) 1379
Bst6I CTCTTC 1 cut(s) 1251
BstAPI GCANNNNNTGC 1 cut(s) 1280
BstBAI YACGTR 1 cut(s) 441
BstC8I GCNNGC 4 cut(s) 55, 185, 243, 420
BstDEI CTNAG 4 cut(s) 728, 735, 795, 1173
BstFNI CGCG 2 cut(s) 165, 235
BstH2I RGCGCY 2 cut(s) 184, 485
BstHHI GCGC 7 cut(s) 183, 235, 418, 484, 644, 1147, 1303
BstKTI GATC 6 cut(s) 20, 177, 204, 331, 522, 595
BstMAI GTCTC 3 cut(s) 323, 920, 1092
BstMBI GATC 6 cut(s) 17, 174, 201, 328, 519, 592
BstMCI CGRYCG 1 cut(s) 20
BstNI CCWGG 3 cut(s) 134, 744, 1117
BstSCI CCNGG 3 cut(s) 132, 742, 1115
BstSLI GKGCMC 1 cut(s) 914
BstUI CGCG 2 cut(s) 165, 235
BstV1I GCAGC 2 cut(s) 69, 769
BstV2I GAAGAC 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 1080
BsuRI GGCC 6 cut(s) 34, 93, 839, 1178, 1208, 1320
BtsIMutI CAGTG 2 cut(s) 883, 1384
Cac8I GCNNGC 4 cut(s) 55, 185, 243, 420
CciI TCATGA 2 cut(s) 1219, 1323
CfoI GCGC 7 cut(s) 183, 235, 418, 484, 644, 1147, 1303
Cfr10I RCCGGY 2 cut(s) 53, 390
Cfr13I GGNCC 4 cut(s) 136, 156, 334, 837
CspAI ACCGGT 1 cut(s) 390
CviAII CATG 5 cut(s) 274, 653, 1162, 1220, 1324
DdeI CTNAG 4 cut(s) 728, 735, 795, 1173
DpnI GATC 6 cut(s) 19, 176, 203, 330, 521, 594
DpnII GATC 6 cut(s) 17, 174, 201, 328, 519, 592
DrdI GACNNNNNNGTC 2 cut(s) 365, 934
DseDI GACNNNNNNGTC 2 cut(s) 365, 934
EaeI YGGCCR 1 cut(s) 1206
Eam1104I CTCTTC 1 cut(s) 1251
EarI CTCTTC 1 cut(s) 1251
EciI GGCGGA 1 cut(s) 577
Ecl136II GAGCTC 3 cut(s) 271, 734, 753
Eco130I CCWWGG 2 cut(s) 714, 801
Eco147I AGGCCT 1 cut(s) 1178
Eco24I GRGCYC 5 cut(s) 247, 273, 736, 755, 801
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 3 cut(s) 136, 156, 334
Eco53kI GAGCTC 3 cut(s) 271, 734, 753
Eco57I CTGAAG 1 cut(s) 983
Eco72I CACGTG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 151
EcoICRI GAGCTC 3 cut(s) 271, 734, 753
EcoRII CCWGG 3 cut(s) 132, 742, 1115
EcoT14I CCWWGG 2 cut(s) 714, 801
EcoT22I ATGCAT 1 cut(s) 1347
EcoT38I GRGCYC 5 cut(s) 247, 273, 736, 755, 801
ErhI CCWWGG 2 cut(s) 714, 801
Esp3I CGTCTC 1 cut(s) 1092
FaeI CATG 5 cut(s) 277, 656, 1165, 1223, 1327
FalI AAGNNNNNCTT 2 cut(s) 506, 538
FatI CATG 5 cut(s) 273, 652, 1161, 1219, 1323
FauI CCCGC 5 cut(s) 58, 147, 234, 276, 427
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 9 cut(s) 35, 38, 41, 58, 423, 446, 449, 783, 1206
FriOI GRGCYC 5 cut(s) 247, 273, 736, 755, 801
Fsp4HI GCNGC 9 cut(s) 35, 38, 41, 58, 423, 446, 449, 783, 1206
FspBI CTAG 2 cut(s) 588, 1263
GlaI GCGC 7 cut(s) 182, 234, 417, 483, 643, 1146, 1302
GluI GCNGC 9 cut(s) 35, 38, 41, 58, 423, 446, 449, 783, 1206
GsuI CTGGAG 4 cut(s) 209, 299, 573, 739
HaeII RGCGCY 2 cut(s) 184, 485
HaeIII GGCC 6 cut(s) 34, 93, 839, 1178, 1208, 1320
HapII CCGG 7 cut(s) 54, 109, 116, 391, 455, 488, 1358
HhaI GCGC 7 cut(s) 183, 235, 418, 484, 644, 1147, 1303
Hin1II CATG 5 cut(s) 277, 656, 1165, 1223, 1327
Hin6I GCGC 7 cut(s) 181, 233, 416, 482, 642, 1145, 1301
HinP1I GCGC 7 cut(s) 181, 233, 416, 482, 642, 1145, 1301
HinfI GANTC 8 cut(s) 112, 354, 366, 555, 682, 1120, 1196, 1228
HpaII CCGG 7 cut(s) 54, 109, 116, 391, 455, 488, 1358
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 3 cut(s) 25, 370, 991
Hpy188III TCNNGA 7 cut(s) 109, 116, 248, 552, 1124, 1220, 1324
Hpy8I GTNNAC 3 cut(s) 25, 370, 991
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 7 cut(s) 187, 231, 308, 388, 667, 1040, 1075
HpyCH4III ACNGT 1 cut(s) 1379
HpyCH4IV ACGT 2 cut(s) 440, 1110
HpyCH4V TGCA 7 cut(s) 662, 785, 901, 1154, 1345, 1382, 1394
HpyF3I CTNAG 4 cut(s) 728, 735, 795, 1173
HpySE526I ACGT 2 cut(s) 440, 1110
Hsp92II CATG 5 cut(s) 277, 656, 1165, 1223, 1327
HspAI GCGC 7 cut(s) 181, 233, 416, 482, 642, 1145, 1301
Kpn2I TCCGGA 2 cut(s) 108, 115
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 6 cut(s) 17, 174, 201, 328, 519, 592
LmnI GCTCC 6 cut(s) 147, 280, 496, 758, 1126, 1360
Lsp1109I GCAGC 2 cut(s) 69, 769
LweI GCATC 5 cut(s) 1175, 1192, 1259, 1270, 1276
MaeI CTAG 2 cut(s) 588, 1263
MaeII ACGT 2 cut(s) 440, 1110
MaeIII GTNAC 1 cut(s) 436
MalI GATC 6 cut(s) 19, 176, 203, 330, 521, 594
MbiI CCGCTC 2 cut(s) 142, 283
MboI GATC 6 cut(s) 17, 174, 201, 328, 519, 592
MboII GAAGA 9 cut(s) 312, 976, 1022, 1114, 1202, 1205, 1237, 1268, 1289
MhlI GDGCHC 6 cut(s) 247, 273, 736, 755, 801, 914
MluCI AATT 5 cut(s) 11, 760, 767, 830, 1056
MlyI GAGTC 3 cut(s) 375, 564, 1129
MmeI TCCRAC 3 cut(s) 96, 912, 1256
Mph1103I ATGCAT 1 cut(s) 1347
MroI TCCGGA 2 cut(s) 108, 115
MroNI GCCGGC 1 cut(s) 53
MseI TTAA 4 cut(s) 693, 833, 981, 1032
MslI CAYNNNNRTG 2 cut(s) 657, 693
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 7 cut(s) 54, 109, 116, 391, 455, 488, 1358
MspR9I CCNGG 3 cut(s) 134, 744, 1117
Mva1269I GAATGC 2 cut(s) 425, 1347
MvaI CCWGG 3 cut(s) 134, 744, 1117
MvnI CGCG 2 cut(s) 165, 235
NaeI GCCGGC 1 cut(s) 55
NdeII GATC 6 cut(s) 17, 174, 201, 328, 519, 592
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 5 cut(s) 277, 656, 1165, 1223, 1327
NlaIV GGNNCC 4 cut(s) 138, 459, 492, 1063
NmuCI GTSAC 1 cut(s) 436
NsiI ATGCAT 1 cut(s) 1347
PagI TCATGA 2 cut(s) 1219, 1323
PceI AGGCCT 1 cut(s) 1178
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 2 cut(s) 425, 1347
PdiI GCCGGC 1 cut(s) 55
PfeI GAWTC 5 cut(s) 112, 354, 682, 1196, 1228
PinAI ACCGGT 1 cut(s) 390
PkrI GCNGC 9 cut(s) 36, 39, 42, 59, 424, 447, 450, 784, 1207
Ple19I CGATCG 1 cut(s) 20
PleI GAGTC 3 cut(s) 374, 563, 1128
PmaCI CACGTG 1 cut(s) 441
PmlI CACGTG 1 cut(s) 441
PpsI GAGTC 3 cut(s) 374, 563, 1128
Ppu21I YACGTR 1 cut(s) 441
PshBI ATTAAT 1 cut(s) 693
Psp124BI GAGCTC 3 cut(s) 273, 736, 755
Psp6I CCWGG 3 cut(s) 132, 742, 1115
PspCI CACGTG 1 cut(s) 441
PspGI CCWGG 3 cut(s) 132, 742, 1115
PspN4I GGNNCC 4 cut(s) 138, 459, 492, 1063
PspPI GGNCC 4 cut(s) 136, 156, 334, 837
PvuI CGATCG 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 187
RseI CAYNNNNRTG 2 cut(s) 657, 693
SacI GAGCTC 3 cut(s) 273, 736, 755
SaqAI TTAA 4 cut(s) 693, 833, 981, 1032
SatI GCNGC 9 cut(s) 35, 38, 41, 58, 423, 446, 449, 783, 1206
Sau3AI GATC 6 cut(s) 17, 174, 201, 328, 519, 592
Sau96I GGNCC 4 cut(s) 136, 156, 334, 837
SchI GAGTC 3 cut(s) 375, 564, 1129
ScrFI CCNGG 3 cut(s) 134, 744, 1117
SduI GDGCHC 6 cut(s) 247, 273, 736, 755, 801, 914
SfaNI GCATC 5 cut(s) 1175, 1192, 1259, 1270, 1276
SinI GGWCC 3 cut(s) 136, 156, 334
SmiMI CAYNNNNRTG 2 cut(s) 657, 693
Sse9I AATT 5 cut(s) 11, 760, 767, 830, 1056
SseBI AGGCCT 1 cut(s) 1178
SspMI CTAG 2 cut(s) 588, 1263
SstI GAGCTC 3 cut(s) 273, 736, 755
StuI AGGCCT 1 cut(s) 1178
StyD4I CCNGG 3 cut(s) 132, 742, 1115
StyI CCWWGG 2 cut(s) 714, 801
TaaI ACNGT 1 cut(s) 1379
TaiI ACGT 2 cut(s) 443, 1113
TaqI TCGA 6 cut(s) 177, 249, 357, 381, 429, 938
TasI AATT 5 cut(s) 11, 760, 767, 830, 1056
TauI GCSGC 7 cut(s) 37, 40, 43, 425, 448, 451, 1208
TfiI GAWTC 5 cut(s) 112, 354, 682, 1196, 1228
Tru1I TTAA 4 cut(s) 693, 833, 981, 1032
Tru9I TTAA 4 cut(s) 693, 833, 981, 1032
TscAI CASTG 2 cut(s) 883, 1384
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 2 cut(s) 57, 782
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 4 cut(s) 674, 885, 1150, 1343
TspGWI ACGGA 3 cut(s) 148, 326, 1008
TspRI CASTG 2 cut(s) 883, 1384
VpaK11BI GGWCC 3 cut(s) 136, 156, 334
VspI ATTAAT 1 cut(s) 693
XapI RAATTY 1 cut(s) 11
XspI CTAG 2 cut(s) 588, 1263
Zsp2I ATGCAT 1 cut(s) 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.