Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020315.1

Orthogroup ID

OG0008822

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2860

Gene Structure 2860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020315.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1441 bp

ggaggtcaacaaggagttgaccccgccggctcgtcctccggagctcaacaaggacaagttgatcgtactggctaaacccaacccaaacctttctggactgaagcggaaaaaactaccatcagagggcgctaatgagatttatcaatatcgtttgaagaagaagaagataccgaaggaggaattgaagaagaagaagaagataccgaaggaggaatggagttgtgctctgtgtcaggttactgtagcaaatgagacaatgtttgatggtcaccttaatggcaagaggcacaaggccagcgaaaaaagacttggagctgaaaaactgggaaagagctccagtaatgcaccactttcaaagaacactgcaaaaccttttgagcctaaagagttagagaccgctggtgctgcaagctcacaattaggggccaaagaagaaaggggtttgcttgaccataatgaagctggtgatgcttcagacaagaaaatgcaggatacagacacttcagaacttccagtgcagaaagaccaatgcggagaggatttgaagaacaatgttgaagtaaaaaaggtgcacatgatgcagagaaaggaagaaccaacaaaaacaaaaaaatttgagttcctatgtgaaatttgtaaagttggtagcaataatccaaaggtgatggagaagcatagtagggcgaagaagcatatggataggcttgaggaactaaaatcgaataaagttcgaaccaccaacaaagcaaatgtgaacactcccaccacaaagtccgtggcatcatcaggggctacgcaggaggcagtaaaaaggcttcagcaagacacagagaacagttttgtacccaccaatgtgattaaagaagaaaacgcgagcattccaaccacaattgctgtggcatcattggtggttaatgagaaggcagaaaatgctaggctgcaggaatctattaatgtgaccaaagaagtaaatgtgagcactcccaccacaaattctgcggcatcatcaggggctacacaggaggcagtaaaaaggcttcagcaagatacaaagaatagtgttgcacctgctaatgtgaccaaagaagcaaatgcgagcattccagtcacgattgctgtggcgtcattgagggctactgggaaggcagaaactgctaggctgcaggaatctgctaatgtgaccaaagaaacaaatgtgagcattccaacagcagcagccgtgacatcatggggggctagtgaggagaccgaaactgctaggctgcttgacgaatctataaagaataaggttccacccattaatgtgaccacagaagcaaatgccaacatgcaaagcacaacctcaatttccgtagaatcattctggtttactgagacggctgaaaatttgaggaaattggaggcttatgaaaagttgatcaaagcaaggttaactgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

479

Amino Acids

52.55

Weight (kDa)

9.22

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008822)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00800 FvH4_1g00800
malus_domestica	MD02G1006400.v1.1 MD15G1151400.v1.1 MD17G1259500.v1.1
prunus_persica	Prupe.7G264500_v2.0.a1 Prupe.7G264500_v2.0.a1 Prupe.7G264500_v2.0.a1
pyrus_communis	pycom02g00530 pycom15g13530 pycom17g26090
rosa_chinensis	RchiOBHm_Chr2g0085511
rosa_laevigata	RLG00000015695
rosa_multiflora	Rmu_sc0007908.1_g000006 Rmu_sc0020315.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155310 Rroxscaffold_2G00155320
rosa_rugosa	Rorug01G0461100
rosa_samantha	Rh2AG009500 Rh2BG010500 Rh2CG011100 Rh2DG011800
rosa_wichuraiana	Rw2G000880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1076
Acc36I	ACCTGC	1 cut(s)	1076
AccII	CGCG	1 cut(s)	873
AccIII	TCCGGA	1 cut(s)	38
AciI	CCGC	5 cut(s)	24, 104, 397, 532, 999
AcsI	RAATTY	4 cut(s)	612, 631, 992, 1385
AcuI	CTGAAG	5 cut(s)	120, 457, 487, 801, 1023
AcyI	GRCGYC	1 cut(s)	1122
AfaI	GTAC	2 cut(s)	67, 844
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	5 cut(s)	155, 185, 355, 545, 558
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AleI	CACNNNNGTG	1 cut(s)	852
AluBI	AGCT	5 cut(s)	44, 315, 334, 412, 462
AluI	AGCT	5 cut(s)	44, 315, 334, 412, 462
Alw21I	GWGCWC	5 cut(s)	46, 227, 336, 574, 981
Alw26I	GTCTC	4 cut(s)	246, 387, 1239, 1368
Alw44I	GTGCAC	1 cut(s)	570
AlwNI	CAGNNNCTG	1 cut(s)	1152
Aor13HI	TCCGGA	1 cut(s)	38
AoxI	GGCC	2 cut(s)	292, 424
ApaLI	GTGCAC	1 cut(s)	570
ApeKI	GCWGC	6 cut(s)	405, 938, 1160, 1212, 1215, 1262
ApoI	RAATTY	4 cut(s)	612, 631, 992, 1385
AseI	ATTAAT	2 cut(s)	952, 1300
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	3 cut(s)	261, 477, 674
AsuII	TTCGAA	1 cut(s)	731
BaeGI	GKGCMC	1 cut(s)	574
BanII	GRGCYC	2 cut(s)	46, 336
BarI	GAAGNNNNNNTAC	4 cut(s)	799, 831, 1021, 1053
Bbv12I	GWGCWC	5 cut(s)	46, 227, 336, 574, 981
BbvI	GCAGC	6 cut(s)	392, 925, 1147, 1224, 1227, 1249
BccI	CCATC	3 cut(s)	125, 258, 659
BceAI	ACGGC	2 cut(s)	1203, 1393
BciVI	GTATCC	1 cut(s)	485
BclI	TGATCA	1 cut(s)	1417
BcoDI	GTCTC	4 cut(s)	246, 387, 1239, 1368
BfaI	CTAG	4 cut(s)	934, 1156, 1237, 1258
BfmI	CTRYAG	3 cut(s)	241, 939, 1161
BfoI	RGCGCY	1 cut(s)	130
BfuAI	ACCTGC	1 cut(s)	1076
BfuI	GTATCC	1 cut(s)	485
BisI	GCNGC	7 cut(s)	406, 939, 1000, 1161, 1213, 1216, 1263
BlsI	GCNGC	7 cut(s)	407, 940, 1001, 1162, 1214, 1217, 1264
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	2 cut(s)	425, 1291
BmrI	ACTGGG	2 cut(s)	333, 1147
BmsI	GCATC	5 cut(s)	458, 568, 789, 909, 1011
BmuI	ACTGGG	2 cut(s)	333, 1147
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	731
BpuEI	CTTGAG	1 cut(s)	726
BsaHI	GRCGYC	1 cut(s)	1122
BsaI	GGTCTC	2 cut(s)	387, 1239
BsaJI	CCNNGG	1 cut(s)	775
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	6 cut(s)	73, 328, 337, 513, 1104, 1142
BseAI	TCCGGA	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	775
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	1363
BseNI	ACTGG	6 cut(s)	73, 328, 337, 513, 1104, 1142
BseRI	GAGGAG	1 cut(s)	1257
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	6 cut(s)	392, 925, 1147, 1224, 1227, 1249
BsgI	GTGCAG	1 cut(s)	537
Bsh1236I	CGCG	1 cut(s)	873
BshFI	GGCC	2 cut(s)	294, 426
BsiHKAI	GWGCWC	5 cut(s)	46, 227, 336, 574, 981
BsiSI	CCGG	2 cut(s)	27, 39
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	4 cut(s)	246, 387, 1239, 1368
BsmBI	CGTCTC	1 cut(s)	1368
BsmI	GAATGC	3 cut(s)	877, 1099, 1201
BsnI	GGCC	2 cut(s)	294, 426
Bso31I	GGTCTC	2 cut(s)	387, 1239
Bsp119I	TTCGAA	1 cut(s)	731
Bsp1286I	GDGCHC	5 cut(s)	46, 227, 336, 574, 981
Bsp13I	TCCGGA	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	61, 1417
BspACI	CCGC	5 cut(s)	24, 104, 397, 532, 999
BspANI	GGCC	2 cut(s)	294, 426
BspCNI	CTCAG	1 cut(s)	1364
BspEI	TCCGGA	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	873
BspLI	GGNNCC	2 cut(s)	425, 1291
BspMAI	CTGCAG	2 cut(s)	943, 1165
BspMI	ACCTGC	1 cut(s)	1076
BspT104I	TTCGAA	1 cut(s)	731
BspTNI	GGTCTC	2 cut(s)	387, 1239
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	6 cut(s)	73, 328, 337, 513, 1104, 1142
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	775
BssMI	GATC	2 cut(s)	61, 1417
BssNI	GRCGYC	1 cut(s)	1122
Bst4CI	ACNGT	2 cut(s)	242, 837
BstACI	GRCGYC	1 cut(s)	1122
BstAPI	GCANNNNNTGC	3 cut(s)	578, 930, 1152
BstBI	TTCGAA	1 cut(s)	731
BstC8I	GCNNGC	5 cut(s)	28, 296, 410, 875, 1097
BstDEI	CTNAG	1 cut(s)	1372
BstDSI	CCRYGG	1 cut(s)	775
BstEII	GGTNACC	1 cut(s)	267
BstFNI	CGCG	1 cut(s)	873
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	64, 1420
BstMAI	GTCTC	4 cut(s)	246, 387, 1239, 1368
BstMBI	GATC	2 cut(s)	61, 1417
BstMWI	GCNNNNNNNGC	5 cut(s)	405, 468, 578, 930, 1152
BstNSI	RCATGY	1 cut(s)	1331
BstPI	GGTNACC	1 cut(s)	267
BstSFI	CTRYAG	3 cut(s)	241, 939, 1161
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	1 cut(s)	873
BstV1I	GCAGC	6 cut(s)	392, 925, 1147, 1224, 1227, 1249
BsuI	GTATCC	1 cut(s)	485
BsuRI	GGCC	2 cut(s)	294, 426
BtgI	CCRYGG	1 cut(s)	775
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	2 cut(s)	361, 520
BveI	ACCTGC	1 cut(s)	1076
Cac8I	GCNNGC	5 cut(s)	28, 296, 410, 875, 1097
CaiI	CAGNNNCTG	1 cut(s)	1152
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	424
CseI	GACGC	1 cut(s)	1111
Csp6I	GTAC	2 cut(s)	66, 843
CspCI	CAANNNNNGTGG	4 cut(s)	757, 792, 877, 912
CviAII	CATG	3 cut(s)	575, 1228, 1328
CviQI	GTAC	2 cut(s)	66, 843
DdeI	CTNAG	1 cut(s)	1372
DpnI	GATC	2 cut(s)	63, 1419
DpnII	GATC	2 cut(s)	61, 1417
Ecl136II	GAGCTC	2 cut(s)	44, 334
Eco24I	GRGCYC	2 cut(s)	46, 336
Eco31I	GGTCTC	2 cut(s)	387, 1239
Eco53kI	GAGCTC	2 cut(s)	44, 334
Eco57I	CTGAAG	5 cut(s)	120, 457, 487, 801, 1023
Eco91I	GGTNACC	1 cut(s)	267
EcoICRI	GAGCTC	2 cut(s)	44, 334
EcoO65I	GGTNACC	1 cut(s)	267
EcoT38I	GRGCYC	2 cut(s)	46, 336
Esp3I	CGTCTC	1 cut(s)	1368
FaeI	CATG	3 cut(s)	578, 1231, 1331
FatI	CATG	3 cut(s)	574, 1227, 1327
FauI	CCCGC	1 cut(s)	31
FauNDI	CATATG	1 cut(s)	694
FbaI	TGATCA	1 cut(s)	1417
Fnu4HI	GCNGC	7 cut(s)	406, 939, 1000, 1161, 1213, 1216, 1263
FriOI	GRGCYC	2 cut(s)	46, 336
Fsp4HI	GCNGC	7 cut(s)	406, 939, 1000, 1161, 1213, 1216, 1263
FspBI	CTAG	4 cut(s)	934, 1156, 1237, 1258
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	7 cut(s)	406, 939, 1000, 1161, 1213, 1216, 1263
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	294, 426
HapII	CCGG	2 cut(s)	27, 39
HgaI	GACGC	1 cut(s)	1111
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	1122
Hin1II	CATG	3 cut(s)	578, 1231, 1331
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	3 cut(s)	8, 19, 1432
HindII	GTYRAC	3 cut(s)	8, 19, 1432
HinfI	GANTC	4 cut(s)	945, 1167, 1272, 1356
HpaI	GTTAAC	1 cut(s)	1432
HpaII	CCGG	2 cut(s)	27, 39
HphI	GGTGA	3 cut(s)	261, 477, 674
Hpy166II	GTNNAC	6 cut(s)	8, 19, 572, 755, 1369, 1432
Hpy188I	TCNGA	3 cut(s)	122, 476, 506
Hpy188III	TCNNGA	3 cut(s)	39, 94, 1109
Hpy8I	GTNNAC	6 cut(s)	8, 19, 572, 755, 1369, 1432
HpyAV	CCTTC	4 cut(s)	167, 200, 914, 1136
HpyCH4III	ACNGT	2 cut(s)	242, 837
HpyF10VI	GCNNNNNNNGC	5 cut(s)	405, 468, 578, 930, 1152
HpyF3I	CTNAG	1 cut(s)	1372
Hsp92I	GRCGYC	1 cut(s)	1122
Hsp92II	CATG	3 cut(s)	578, 1231, 1331
HspAI	GCGC	1 cut(s)	127
Kpn2I	TCCGGA	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	1417
KspAI	GTTAAC	1 cut(s)	1432
Kzo9I	GATC	2 cut(s)	61, 1417
LmnI	GCTCC	3 cut(s)	41, 312, 339
Lsp1109I	GCAGC	6 cut(s)	392, 925, 1147, 1224, 1227, 1249
LweI	GCATC	5 cut(s)	458, 568, 789, 909, 1011
MaeI	CTAG	4 cut(s)	934, 1156, 1237, 1258
MaeIII	GTNAC	8 cut(s)	236, 267, 956, 1076, 1106, 1178, 1220, 1304
MalI	GATC	2 cut(s)	63, 1419
MboI	GATC	2 cut(s)	61, 1417
MfeI	CAATTG	1 cut(s)	889
MhlI	GDGCHC	5 cut(s)	46, 227, 336, 574, 981
MluCI	AATT	9 cut(s)	180, 417, 612, 631, 889, 992, 1345, 1385, 1395
MmeI	TCCRAC	2 cut(s)	906, 1230
MroI	TCCGGA	1 cut(s)	38
MroNI	GCCGGC	1 cut(s)	26
MseI	TTAA	6 cut(s)	274, 859, 913, 952, 1300, 1431
MslI	CAYNNNNRTG	3 cut(s)	274, 852, 1302
MspA1I	CMGCKG	1 cut(s)	399
MspI	CCGG	2 cut(s)	27, 39
MunI	CAATTG	1 cut(s)	889
Mva1269I	GAATGC	3 cut(s)	877, 1099, 1201
MvnI	CGCG	1 cut(s)	873
MwoI	GCNNNNNNNGC	5 cut(s)	405, 468, 578, 930, 1152
NaeI	GCCGGC	1 cut(s)	28
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	2 cut(s)	61, 1417
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	3 cut(s)	578, 1231, 1331
NlaIV	GGNNCC	2 cut(s)	425, 1291
NmuCI	GTSAC	7 cut(s)	267, 956, 1076, 1106, 1178, 1220, 1304
NspI	RCATGY	1 cut(s)	1331
NspV	TTCGAA	1 cut(s)	731
OliI	CACNNNNGTG	1 cut(s)	852
PaqCI	CACCTGC	1 cut(s)	1076
PctI	GAATGC	3 cut(s)	877, 1099, 1201
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	4 cut(s)	945, 1167, 1272, 1356
PkrI	GCNGC	7 cut(s)	407, 940, 1001, 1162, 1214, 1217, 1264
PshBI	ATTAAT	2 cut(s)	952, 1300
Psp124BI	GAGCTC	2 cut(s)	46, 336
PspEI	GGTNACC	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	425, 1291
PspPI	GGNCC	1 cut(s)	424
PstI	CTGCAG	2 cut(s)	943, 1165
PstNI	CAGNNNCTG	1 cut(s)	1152
RsaI	GTAC	2 cut(s)	67, 844
RsaNI	GTAC	2 cut(s)	66, 843
RseI	CAYNNNNRTG	3 cut(s)	274, 852, 1302
SacI	GAGCTC	2 cut(s)	46, 336
SaqAI	TTAA	6 cut(s)	274, 859, 913, 952, 1300, 1431
SatI	GCNGC	7 cut(s)	406, 939, 1000, 1161, 1213, 1216, 1263
Sau3AI	GATC	2 cut(s)	61, 1417
Sau96I	GGNCC	1 cut(s)	424
SduI	GDGCHC	5 cut(s)	46, 227, 336, 574, 981
SfaNI	GCATC	5 cut(s)	458, 568, 789, 909, 1011
SfcI	CTRYAG	3 cut(s)	241, 939, 1161
SfuI	TTCGAA	1 cut(s)	731
SmiMI	CAYNNNNRTG	3 cut(s)	274, 852, 1302
SmlI	CTYRAG	1 cut(s)	705
SmoI	CTYRAG	1 cut(s)	705
Sse9I	AATT	9 cut(s)	180, 417, 612, 631, 889, 992, 1345, 1385, 1395
SsiI	CCGC	5 cut(s)	24, 104, 397, 532, 999
SspMI	CTAG	4 cut(s)	934, 1156, 1237, 1258
SstI	GAGCTC	2 cut(s)	46, 336
TaaI	ACNGT	2 cut(s)	242, 837
TaqI	TCGA	2 cut(s)	720, 731
TaqII	GACCGA	1 cut(s)	1263
TasI	AATT	9 cut(s)	180, 417, 612, 631, 889, 992, 1345, 1385, 1395
TauI	GCSGC	1 cut(s)	1002
TfiI	GAWTC	4 cut(s)	945, 1167, 1272, 1356
Tru1I	TTAA	6 cut(s)	274, 859, 913, 952, 1300, 1431
Tru9I	TTAA	6 cut(s)	274, 859, 913, 952, 1300, 1431
TscAI	CASTG	2 cut(s)	368, 520
TseFI	GTSAC	7 cut(s)	267, 956, 1076, 1106, 1178, 1220, 1304
TseI	GCWGC	6 cut(s)	405, 938, 1160, 1212, 1215, 1262
Tsp45I	GTSAC	7 cut(s)	267, 956, 1076, 1106, 1178, 1220, 1304
TspDTI	ATGAA	2 cut(s)	472, 1423
TspGWI	ACGGA	2 cut(s)	764, 1340
TspRI	CASTG	2 cut(s)	368, 520
VneI	GTGCAC	1 cut(s)	570
VspI	ATTAAT	2 cut(s)	952, 1300
XapI	RAATTY	4 cut(s)	612, 631, 992, 1385
XceI	RCATGY	1 cut(s)	1331
XcmI	CCANNNNNNNNNTGG	3 cut(s)	459, 773, 893
XspI	CTAG	4 cut(s)	934, 1156, 1237, 1258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.