Rorug01G0461100

Zinc-finger of C2H2 type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008822
Physical Location & Seq
Forward (+)
55435428 .. 55438675
3248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0461100.1

Sequence Viewer

Length: 1227 bp
ATGGGCGAACTCAATATGGACGATATGCCCCTACCGGCGCTGTTCGAGCAAGCTCGGAAGGTCCATTTCACGGCGACGGAGTCCGGCAATGAGATTGATCAGGATGGGGTGAAGAAAGCGTGCAGGGCTTTGGAGAAGTGCGATGAAATGATAAGCAAGCTTGGTTTGTTCTCAACAAACGAGACCAAGGAGGATATCAGCACCACCAATCTCAAGTATATTATGGTGCCGTATTATCTTGGTGAGTTGACCGAGAAGGTTGCACATGATGATAGGATACAGATTGTTAAGGAAGCTCAGGCTAAGTTAAAGGAATTTGTTTCGTTTTGTGAGGCGATGGAGCTTGTGCCGGAAGAAGAGTTGGAAGTGTCTAGACAAGATGGTCCGAAATCCAATTCAATGGCTGACCGAAGGGCTCAGAAGATTGCTCGATTCAAACGCCAAAGAGCGGCAGAATCAAAGTTGCTGGAAATTAAGGAGAGGAGAGAGCGGAGAGGGCGTTCAACTAGAGCATCTGCCTTGTCAACTCCTATTGAGGCAGGAGATGAAGATGTGCTGGATGATGATGGAGAGGAGGAACGAGAGGCCTGGTTTACTTCTATCTCTTTGGCACTCTGTAAGGCTTTTGATCTGTTGGAAATGCTAAAGAAGGAAGAAGAGATGTTGCTAGCTTTTAAGGAAAGGCAATCAAAGGAGGGGGATAAGGAATTTTATCAAGAAGTTCTTGATGATCGCGCCCAGAGGGCTGAAGCTTGGCATCGTAATGCTGCAGCTCGAGTGCAGTATAGTAAACCAGCACAGCCTATTACATGTGCAACTTTTGCACAAGATGTTTTAGAAGGGAGAGCAAGTGTGTCACAGATGCATGAGCACAAACACCAGCCACTAATCTTTGGACCAGCAAGTCTTGTTGGTGGAAGCATAACAAGTGAGAGGGAAAGGATGGCTGCTCAGGTTTTCCAGCCTAGTCATAGGTTACCCACCATGAGCATTGAGGAAGCTGGGCTGAAGGAGATGGAGATAATGAACAAATGGCAAGAGAGGAATGTTAAACTCATGGAAGAAGCAAACTCTTCATGGTACAATGACAGTGGGAAACTGCCAGGACCGCCCCAGGAAGATGATGAAGATGATGATGCTGCTCAAGACAAGGCAAGGGCGTGGGATGACTGGAAAGACGATAATCCTCGAGGTGCTGGCAATAAGAAGCTCACCCCTTGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

408

Amino Acids

46.4

Weight (kDa)

4.98

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAP42 PF04177 11 - 396 6.4e-91 TAP42-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 381, 903
AbsI CCTCGAGG 1 cut(s) 1188
AccB1I GGYRCC 1 cut(s) 226
AccBSI CCGCTC 2 cut(s) 449, 490
AccII CGCG 1 cut(s) 735
AciI CCGC 3 cut(s) 449, 490, 1109
AcsI RAATTY 2 cut(s) 314, 707
AcuI CTGAAG 2 cut(s) 768, 1028
AfaI GTAC 1 cut(s) 1082
AfiI CCNNNNNNNGG 2 cut(s) 70, 448
AflIII ACRYGT 1 cut(s) 809
AgsI TTSAA 3 cut(s) 399, 436, 504
AjnI CCWGG 3 cut(s) 587, 1102, 1113
AloI GAACNNNNNNTCC 2 cut(s) 484, 516
AluBI AGCT 9 cut(s) 53, 160, 296, 343, 671, 752, 773, 1001, 1210
AluI AGCT 9 cut(s) 53, 160, 296, 343, 671, 752, 773, 1001, 1210
Alw21I GWGCWC 1 cut(s) 873
Alw26I GTCTC 1 cut(s) 176
Ama87I CYCGRG 2 cut(s) 774, 1188
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 4 cut(s) 767, 770, 947, 1139
ApoI RAATTY 2 cut(s) 314, 707
AspLEI GCGC 2 cut(s) 40, 737
AspS9I GGNCC 4 cut(s) 61, 383, 896, 1106
AsuHPI GGTGA 3 cut(s) 121, 254, 1204
AsuNHI GCTAGC 1 cut(s) 667
AvaI CYCGRG 2 cut(s) 774, 1188
AvaII GGWCC 4 cut(s) 61, 383, 896, 1106
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 873
BbvI GCAGC 4 cut(s) 754, 782, 934, 1126
BccI CCATC 6 cut(s) 98, 331, 374, 560, 937, 1009
BceAI ACGGC 2 cut(s) 87, 214
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciT130I CCWGG 3 cut(s) 589, 1104, 1115
BciVI GTATCC 1 cut(s) 270
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 4 cut(s) 372, 507, 668, 966
BfmI CTRYAG 1 cut(s) 768
BfoI RGCGCY 1 cut(s) 41
BfuI GTATCC 1 cut(s) 270
BglI GCCNNNNNGGC 1 cut(s) 743
BisI GCNGC 5 cut(s) 450, 768, 771, 948, 1140
BlsI GCNGC 5 cut(s) 451, 769, 772, 949, 1141
Bme1390I CCNGG 3 cut(s) 589, 1104, 1115
Bme18I GGWCC 4 cut(s) 61, 383, 896, 1106
BmeT110I CYCGRG 2 cut(s) 774, 1188
BmgT120I GGNCC 4 cut(s) 61, 383, 896, 1106
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 3 cut(s) 589, 1104, 1115
BmsI GCATC 4 cut(s) 521, 766, 852, 1126
BmtI GCTAGC 1 cut(s) 671
Bpu10I CCTNAGC 2 cut(s) 297, 951
BpuEI CTTGAG 2 cut(s) 197, 1128
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 186, 1113
BsaXI ACNNNNNCTCC 4 cut(s) 484, 514, 835, 865
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 448
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 1175
Bse3DI GCAATG 1 cut(s) 94
BseBI CCWGG 3 cut(s) 589, 1104, 1115
BseDI CCNNGG 2 cut(s) 186, 1113
BseGI GGATG 4 cut(s) 109, 565, 948, 1171
BseLI CCNNNNNNNGG 2 cut(s) 70, 448
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 3 cut(s) 311, 431, 965
BseNI ACTGG 1 cut(s) 1175
BseRI GAGGAG 2 cut(s) 496, 587
BseXI GCAGC 4 cut(s) 754, 782, 934, 1126
BseYI CCCAGC 1 cut(s) 1001
BsgI GTGCAG 2 cut(s) 142, 800
Bsh1236I CGCG 1 cut(s) 735
BshFI GGCC 1 cut(s) 587
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 873
BsiHKCI CYCGRG 2 cut(s) 774, 1188
BsiSI CCGG 3 cut(s) 35, 84, 350
BslI CCNNNNNNNGG 2 cut(s) 70, 448
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 1 cut(s) 587
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 2 cut(s) 774, 1188
Bsp1286I GDGCHC 2 cut(s) 418, 873
Bsp143I GATC 3 cut(s) 97, 628, 730
BspACI CCGC 3 cut(s) 449, 490, 1109
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 3 cut(s) 310, 430, 964
BspFNI CGCG 1 cut(s) 735
BspLI GGNNCC 1 cut(s) 228
BspMAI CTGCAG 1 cut(s) 772
BspOI GCTAGC 1 cut(s) 671
BspT107I GGYRCC 1 cut(s) 226
BspTNI GGTCTC 1 cut(s) 176
BsrBI CCGCTC 2 cut(s) 449, 490
BsrDI GCAATG 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 1 cut(s) 1175
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 186, 1113
BssMI GATC 3 cut(s) 97, 628, 730
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 3 cut(s) 589, 1104, 1115
Bst4CI ACNGT 1 cut(s) 1091
Bst6I CTCTTC 3 cut(s) 351, 651, 1078
BstAPI GCANNNNNTGC 1 cut(s) 821
BstC8I GCNNGC 5 cut(s) 51, 121, 158, 669, 1198
BstDEI CTNAG 4 cut(s) 297, 303, 417, 951
BstEII GGTNACC 1 cut(s) 975
BstF5I GGATG 4 cut(s) 109, 565, 948, 1171
BstFNI CGCG 1 cut(s) 735
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 2 cut(s) 40, 737
BstKTI GATC 3 cut(s) 100, 631, 733
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 3 cut(s) 97, 628, 730
BstMWI GCNNNNNNNGC 6 cut(s) 46, 125, 496, 743, 821, 1108
BstNI CCWGG 3 cut(s) 589, 1104, 1115
BstNSI RCATGY 1 cut(s) 813
BstPI GGTNACC 1 cut(s) 975
BstSCI CCNGG 3 cut(s) 587, 1102, 1113
BstSFI CTRYAG 1 cut(s) 768
BstUI CGCG 1 cut(s) 735
BstV1I GCAGC 4 cut(s) 754, 782, 934, 1126
BstXI CCANNNNNNTGG 1 cut(s) 400
BsuI GTATCC 1 cut(s) 270
BsuRI GGCC 1 cut(s) 587
BtgZI GCGATG 2 cut(s) 156, 350
BtsCI GGATG 4 cut(s) 109, 565, 948, 1171
BtsIMutI CAGTG 1 cut(s) 1096
Cac8I GCNNGC 5 cut(s) 51, 121, 158, 669, 1198
CfoI GCGC 2 cut(s) 40, 737
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 4 cut(s) 61, 383, 896, 1106
Csp6I GTAC 1 cut(s) 1081
CspCI CAANNNNNGTGG 2 cut(s) 1072, 1107
CviAII CATG 6 cut(s) 266, 810, 866, 985, 1057, 1077
CviQI GTAC 1 cut(s) 1081
DdeI CTNAG 4 cut(s) 297, 303, 417, 951
DpnI GATC 3 cut(s) 99, 630, 732
DpnII GATC 3 cut(s) 97, 628, 730
DrdI GACNNNNNNGTC 2 cut(s) 381, 903
DseDI GACNNNNNNGTC 2 cut(s) 381, 903
Eam1104I CTCTTC 3 cut(s) 351, 651, 1078
EarI CTCTTC 3 cut(s) 351, 651, 1078
Eco130I CCWWGG 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 587
Eco24I GRGCYC 1 cut(s) 418
Eco31I GGTCTC 1 cut(s) 176
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 4 cut(s) 61, 383, 896, 1106
Eco57I CTGAAG 2 cut(s) 768, 1028
Eco88I CYCGRG 2 cut(s) 774, 1188
Eco91I GGTNACC 1 cut(s) 975
EcoO65I GGTNACC 1 cut(s) 975
EcoRII CCWGG 3 cut(s) 587, 1102, 1113
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 867
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 6 cut(s) 269, 813, 869, 988, 1060, 1080
FalI AAGNNNNNCTT 2 cut(s) 708, 740
FatI CATG 6 cut(s) 265, 809, 865, 984, 1056, 1076
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 5 cut(s) 450, 768, 771, 948, 1140
FokI GGATG 4 cut(s) 116, 572, 955, 1178
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 5 cut(s) 450, 768, 771, 948, 1140
FspBI CTAG 4 cut(s) 372, 507, 668, 966
GlaI GCGC 2 cut(s) 39, 736
GluI GCNGC 5 cut(s) 450, 768, 771, 948, 1140
GsaI CCCAGC 1 cut(s) 1005
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 1 cut(s) 587
HapII CCGG 3 cut(s) 35, 84, 350
HhaI GCGC 2 cut(s) 40, 737
Hin1II CATG 6 cut(s) 269, 813, 869, 988, 1060, 1080
Hin6I GCGC 2 cut(s) 38, 735
HinP1I GCGC 2 cut(s) 38, 735
HincII GTYRAC 2 cut(s) 249, 525
HindII GTYRAC 2 cut(s) 249, 525
HindIII AAGCTT 2 cut(s) 158, 750
HinfI GANTC 3 cut(s) 80, 432, 455
HpaII CCGG 3 cut(s) 35, 84, 350
HphI GGTGA 3 cut(s) 121, 254, 1204
Hpy166II GTNNAC 4 cut(s) 249, 525, 594, 791
Hpy188I TCNGA 3 cut(s) 57, 387, 420
Hpy188III TCNNGA 5 cut(s) 101, 372, 716, 725, 1145
Hpy8I GTNNAC 4 cut(s) 249, 525, 594, 791
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 6 cut(s) 52, 250, 405, 643, 833, 1003
HpyCH4III ACNGT 1 cut(s) 1091
HpyCH4V TGCA 7 cut(s) 123, 263, 770, 781, 815, 824, 865
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 125, 496, 743, 821, 1108
HpyF3I CTNAG 4 cut(s) 297, 303, 417, 951
Hsp92II CATG 6 cut(s) 269, 813, 869, 988, 1060, 1080
HspAI GCGC 2 cut(s) 38, 735
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 3 cut(s) 97, 628, 730
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 4 cut(s) 754, 782, 934, 1126
LweI GCATC 4 cut(s) 521, 766, 852, 1126
MaeI CTAG 4 cut(s) 372, 507, 668, 966
MaeIII GTNAC 2 cut(s) 855, 975
MalI GATC 3 cut(s) 99, 630, 732
MbiI CCGCTC 2 cut(s) 449, 490
MboI GATC 3 cut(s) 97, 628, 730
MhlI GDGCHC 2 cut(s) 418, 873
MluCI AATT 4 cut(s) 314, 394, 471, 707
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 342, 615
Mph1103I ATGCAT 1 cut(s) 867
MseI TTAA 5 cut(s) 288, 308, 474, 675, 1050
MslI CAYNNNNRTG 1 cut(s) 762
MspI CCGG 3 cut(s) 35, 84, 350
MspR9I CCNGG 3 cut(s) 589, 1104, 1115
MvaI CCWGG 3 cut(s) 589, 1104, 1115
MvnI CGCG 1 cut(s) 735
MwoI GCNNNNNNNGC 6 cut(s) 46, 125, 496, 743, 821, 1108
NdeII GATC 3 cut(s) 97, 628, 730
NheI GCTAGC 1 cut(s) 667
NlaIII CATG 6 cut(s) 269, 813, 869, 988, 1060, 1080
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 855
NsiI ATGCAT 1 cut(s) 867
NspI RCATGY 1 cut(s) 813
PaeR7I CTCGAG 2 cut(s) 774, 1188
PceI AGGCCT 1 cut(s) 587
PciI ACATGT 1 cut(s) 809
PfeI GAWTC 2 cut(s) 432, 455
PflFI GACNNNGTC 1 cut(s) 79
PkrI GCNGC 5 cut(s) 451, 769, 772, 949, 1141
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PscI ACATGT 1 cut(s) 809
Psp6I CCWGG 3 cut(s) 587, 1102, 1113
PspEI GGTNACC 1 cut(s) 975
PspFI CCCAGC 1 cut(s) 1001
PspGI CCWGG 3 cut(s) 587, 1102, 1113
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 4 cut(s) 61, 383, 896, 1106
PspXI VCTCGAGB 2 cut(s) 774, 1188
PstI CTGCAG 1 cut(s) 772
PsyI GACNNNGTC 1 cut(s) 79
RsaI GTAC 1 cut(s) 1082
RsaNI GTAC 1 cut(s) 1081
RseI CAYNNNNRTG 1 cut(s) 762
SaqAI TTAA 5 cut(s) 288, 308, 474, 675, 1050
SatI GCNGC 5 cut(s) 450, 768, 771, 948, 1140
Sau3AI GATC 3 cut(s) 97, 628, 730
Sau96I GGNCC 4 cut(s) 61, 383, 896, 1106
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 3 cut(s) 589, 1104, 1115
SduI GDGCHC 2 cut(s) 418, 873
SfaNI GCATC 4 cut(s) 521, 766, 852, 1126
SfcI CTRYAG 1 cut(s) 768
Sfr274I CTCGAG 2 cut(s) 774, 1188
SinI GGWCC 4 cut(s) 61, 383, 896, 1106
SlaI CTCGAG 2 cut(s) 774, 1188
SmiMI CAYNNNNRTG 1 cut(s) 762
SmlI CTYRAG 4 cut(s) 212, 774, 1143, 1188
SmoI CTYRAG 4 cut(s) 212, 774, 1143, 1188
Sse9I AATT 4 cut(s) 314, 394, 471, 707
SseBI AGGCCT 1 cut(s) 587
SsiI CCGC 3 cut(s) 449, 490, 1109
SspMI CTAG 4 cut(s) 372, 507, 668, 966
StuI AGGCCT 1 cut(s) 587
StyD4I CCNGG 3 cut(s) 587, 1102, 1113
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 1091
TaqI TCGA 4 cut(s) 45, 430, 775, 1189
TaqII GACCGA 2 cut(s) 266, 423
TasI AATT 4 cut(s) 314, 394, 471, 707
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 2 cut(s) 432, 455
Tru1I TTAA 5 cut(s) 288, 308, 474, 675, 1050
Tru9I TTAA 5 cut(s) 288, 308, 474, 675, 1050
TscAI CASTG 1 cut(s) 1096
TseFI GTSAC 1 cut(s) 855
TseI GCWGC 4 cut(s) 767, 770, 947, 1139
Tsp45I GTSAC 1 cut(s) 855
TspDTI ATGAA 5 cut(s) 159, 561, 1040, 1065, 1140
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 1 cut(s) 1096
Tth111I GACNNNGTC 1 cut(s) 79
VpaK11BI GGWCC 4 cut(s) 61, 383, 896, 1106
XapI RAATTY 2 cut(s) 314, 707
XbaI TCTAGA 1 cut(s) 371
XceI RCATGY 1 cut(s) 813
XhoI CTCGAG 2 cut(s) 774, 1188
XspI CTAG 4 cut(s) 372, 507, 668, 966
Zsp2I ATGCAT 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.