Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008822

Physical Location & Seq

Genomic Coordinates Reverse (-)

91700892 .. 91701668

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGAAACATAGTAGGGCGAAGAAGCATATGGATAGGCTTGAGGAACTAAAAATGAATAAAGTTCGAACCACCAATGAAGCAAATGTGAACAATCCCACCACAAAGTCTCTGGCATCATCAGGGGCTACGCAGGAGGCAGTAAAGAGGCTTCAGCAAGACACGGAGAACAGTTTTGTACCCACCAATGTGATTAAAAAAGCAAACGCGAGCATTCCAACCACAAGTGCTGTGGCATCATTGGTGGTTAATGAGAAGGCAGAAAATGCTAGGCTGCAGGAATCTATTAATGTGACCAAAGAAGCAAATGTGAGCACTCCCACCACAAATTCTGTGGCATCATCAGGGGCTACGCAGGAGGCAGTAAAAAGGCTTCAGCAAGATACAAAGAATAGTGTTGCACCTGCTAATGTGACCAAAGAAGCAAATGCGAGCATTCCAGTCACGATTGCTGTGGCATCATTGAGGGCTACTGGGAAGGCAGAAACTGCTAGGCTGCAGGAATCTGCTCATGTGACCAAAGAAGCAAATGTGAGCATTCCAACAGCAGCAGCGGTGACATCATGGGGAGCTAGTGACGAGACAGAAACTGCTAGGCTGCTTGAGGAATCTATAAAGAATAAGGTTCCAACCACTAATGCGACCACAGAAACAAATGCCAACATGCAAAGCACAACCTCAATTGCCGTGGAATCATTCTGGTTTACTGAGACGGCTGAAAATTTGAGGAAATTGGAGGCTTATGAAAAGTTGATCAAAGCAAGGTTAACTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

258

Amino Acids

27.78

Weight (kDa)

8.69

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008822)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00800 FvH4_1g00800
malus_domestica	MD02G1006400.v1.1 MD15G1151400.v1.1 MD17G1259500.v1.1
prunus_persica	Prupe.7G264500_v2.0.a1 Prupe.7G264500_v2.0.a1 Prupe.7G264500_v2.0.a1
pyrus_communis	pycom02g00530 pycom15g13530 pycom17g26090
rosa_chinensis	RchiOBHm_Chr2g0085511
rosa_laevigata	RLG00000015695
rosa_multiflora	Rmu_sc0007908.1_g000006 Rmu_sc0020315.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155310 Rroxscaffold_2G00155320
rosa_rugosa	Rorug01G0461100
rosa_samantha	Rh2AG009500 Rh2BG010500 Rh2CG011100 Rh2DG011800
rosa_wichuraiana	Rw2G000880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	412
Acc36I	ACCTGC	1 cut(s)	412
AccII	CGCG	1 cut(s)	209
AciI	CCGC	1 cut(s)	554
AcsI	RAATTY	2 cut(s)	328, 721
AcuI	CTGAAG	2 cut(s)	137, 359
AfaI	GTAC	1 cut(s)	180
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	1 cut(s)	572
AluI	AGCT	1 cut(s)	572
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	3 cut(s)	114, 575, 704
AlwNI	CAGNNNCTG	2 cut(s)	488, 590
ApeKI	GCWGC	5 cut(s)	274, 496, 548, 551, 598
ApoI	RAATTY	2 cut(s)	328, 721
AseI	ATTAAT	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	568
AsuII	TTCGAA	1 cut(s)	67
BarI	GAAGNNNNNNTAC	4 cut(s)	135, 167, 357, 389
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	5 cut(s)	261, 483, 560, 563, 585
BceAI	ACGGC	2 cut(s)	671, 729
BclI	TGATCA	1 cut(s)	753
BcoDI	GTCTC	3 cut(s)	114, 575, 704
BfaI	CTAG	4 cut(s)	270, 492, 573, 594
BfmI	CTRYAG	2 cut(s)	275, 497
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	5 cut(s)	275, 497, 549, 552, 599
BlsI	GCNGC	5 cut(s)	276, 498, 550, 553, 600
BmiI	GGNNCC	1 cut(s)	627
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	4 cut(s)	125, 245, 347, 467
BmuI	ACTGGG	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	67
BpuEI	CTTGAG	2 cut(s)	62, 623
BsaJI	CCNNGG	1 cut(s)	687
Bse1I	ACTGG	2 cut(s)	440, 478
BseDI	CCNNGG	1 cut(s)	687
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	2 cut(s)	440, 478
BseXI	GCAGC	5 cut(s)	261, 483, 560, 563, 585
Bsh1236I	CGCG	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	317
BsmAI	GTCTC	3 cut(s)	114, 575, 704
BsmBI	CGTCTC	1 cut(s)	704
BsmI	GAATGC	3 cut(s)	213, 435, 537
Bsp119I	TTCGAA	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	753
BspACI	CCGC	1 cut(s)	554
BspCNI	CTCAG	1 cut(s)	700
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	627
BspMAI	CTGCAG	2 cut(s)	279, 501
BspMI	ACCTGC	1 cut(s)	412
BspT104I	TTCGAA	1 cut(s)	67
BsrI	ACTGG	2 cut(s)	440, 478
BssECI	CCNNGG	1 cut(s)	687
BssMI	GATC	1 cut(s)	753
Bst4CI	ACNGT	1 cut(s)	173
BstAPI	GCANNNNNTGC	2 cut(s)	266, 488
BstBI	TTCGAA	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	211, 433
BstDEI	CTNAG	1 cut(s)	708
BstDSI	CCRYGG	1 cut(s)	687
BstFNI	CGCG	1 cut(s)	209
BstKTI	GATC	1 cut(s)	756
BstMAI	GTCTC	3 cut(s)	114, 575, 704
BstMBI	GATC	1 cut(s)	753
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 488
BstNSI	RCATGY	1 cut(s)	667
BstSFI	CTRYAG	2 cut(s)	275, 497
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	5 cut(s)	261, 483, 560, 563, 585
BtgI	CCRYGG	1 cut(s)	687
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	2 cut(s)	211, 433
CaiI	CAGNNNCTG	2 cut(s)	488, 590
Csp6I	GTAC	1 cut(s)	179
CspCI	CAANNNNNGTGG	6 cut(s)	213, 248, 315, 350, 669, 704
CviAII	CATG	3 cut(s)	512, 564, 664
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	1 cut(s)	708
DpnI	GATC	1 cut(s)	755
DpnII	GATC	1 cut(s)	753
Eco57I	CTGAAG	2 cut(s)	137, 359
Esp3I	CGTCTC	1 cut(s)	704
FaeI	CATG	3 cut(s)	515, 567, 667
FaiI	YATR	8 cut(s)	12, 30, 32, 513, 565, 614, 665, 744
FatI	CATG	3 cut(s)	511, 563, 663
FauNDI	CATATG	1 cut(s)	30
FbaI	TGATCA	1 cut(s)	753
Fnu4HI	GCNGC	5 cut(s)	275, 497, 549, 552, 599
Fsp4HI	GCNGC	5 cut(s)	275, 497, 549, 552, 599
FspBI	CTAG	4 cut(s)	270, 492, 573, 594
GluI	GCNGC	5 cut(s)	275, 497, 549, 552, 599
Hin1II	CATG	3 cut(s)	515, 567, 667
HincII	GTYRAC	1 cut(s)	768
HindII	GTYRAC	1 cut(s)	768
HinfI	GANTC	4 cut(s)	281, 503, 608, 692
HpaI	GTTAAC	1 cut(s)	768
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	3 cut(s)	91, 705, 768
Hpy188III	TCNNGA	1 cut(s)	445
Hpy8I	GTNNAC	3 cut(s)	91, 705, 768
HpyAV	CCTTC	2 cut(s)	250, 472
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	4 cut(s)	277, 401, 499, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 488
HpyF3I	CTNAG	1 cut(s)	708
Hsp92II	CATG	3 cut(s)	515, 567, 667
Ksp22I	TGATCA	1 cut(s)	753
KspAI	GTTAAC	1 cut(s)	768
Kzo9I	GATC	1 cut(s)	753
LmnI	GCTCC	1 cut(s)	569
Lsp1109I	GCAGC	5 cut(s)	261, 483, 560, 563, 585
LweI	GCATC	4 cut(s)	125, 245, 347, 467
MaeI	CTAG	4 cut(s)	270, 492, 573, 594
MaeIII	GTNAC	6 cut(s)	292, 412, 442, 514, 556, 575
MalI	GATC	1 cut(s)	755
MboI	GATC	1 cut(s)	753
MboII	GAAGA	1 cut(s)	34
MfeI	CAATTG	1 cut(s)	681
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	4 cut(s)	328, 681, 721, 731
MmeI	TCCRAC	3 cut(s)	242, 566, 653
MnlI	CCTC	9 cut(s)	37, 130, 141, 352, 459, 598, 688, 720, 730
MseI	TTAA	4 cut(s)	195, 249, 288, 767
MslI	CAYNNNNRTG	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	554
MunI	CAATTG	1 cut(s)	681
Mva1269I	GAATGC	3 cut(s)	213, 435, 537
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	266, 488
NdeI	CATATG	1 cut(s)	30
NdeII	GATC	1 cut(s)	753
NlaIII	CATG	3 cut(s)	515, 567, 667
NlaIV	GGNNCC	1 cut(s)	627
NmuCI	GTSAC	6 cut(s)	292, 412, 442, 514, 556, 575
NspI	RCATGY	1 cut(s)	667
NspV	TTCGAA	1 cut(s)	67
OliI	CACNNNNGTG	1 cut(s)	188
PaqCI	CACCTGC	1 cut(s)	412
PctI	GAATGC	3 cut(s)	213, 435, 537
PfeI	GAWTC	4 cut(s)	281, 503, 608, 692
PkrI	GCNGC	5 cut(s)	276, 498, 550, 553, 600
PshBI	ATTAAT	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	627
PstI	CTGCAG	2 cut(s)	279, 501
PstNI	CAGNNNCTG	2 cut(s)	488, 590
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	4 cut(s)	195, 249, 288, 767
SatI	GCNGC	5 cut(s)	275, 497, 549, 552, 599
Sau3AI	GATC	1 cut(s)	753
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	5 cut(s)	406, 574, 627, 680, 767
SfaNI	GCATC	4 cut(s)	125, 245, 347, 467
SfcI	CTRYAG	2 cut(s)	275, 497
SfuI	TTCGAA	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	2 cut(s)	41, 602
SmoI	CTYRAG	2 cut(s)	41, 602
Sse9I	AATT	4 cut(s)	328, 681, 721, 731
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	4 cut(s)	270, 492, 573, 594
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	67
TasI	AATT	4 cut(s)	328, 681, 721, 731
TfiI	GAWTC	4 cut(s)	281, 503, 608, 692
Tru1I	TTAA	4 cut(s)	195, 249, 288, 767
Tru9I	TTAA	4 cut(s)	195, 249, 288, 767
TseFI	GTSAC	6 cut(s)	292, 412, 442, 514, 556, 575
TseI	GCWGC	5 cut(s)	274, 496, 548, 551, 598
Tsp45I	GTSAC	6 cut(s)	292, 412, 442, 514, 556, 575
TspDTI	ATGAA	3 cut(s)	71, 93, 759
TspGWI	ACGGA	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	288
XapI	RAATTY	2 cut(s)	328, 721
XceI	RCATGY	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	3 cut(s)	109, 229, 331
XspI	CTAG	4 cut(s)	270, 492, 573, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.